Experiment set2S228 for Escherichia coli ECRC98

Compare to:

WM_JK32

200 most detrimental genes:

  gene name fitness t score description  
JDDGAC_25500 +2.4 5.7 hypothetical protein compare
JDDGAC_21970 agaR +1.9 7.2 aga operon transcriptional regulator AgaR compare
JDDGAC_09195 +1.7 10.2 Spike protein compare
JDDGAC_25615 +1.6 2.3 hypothetical protein compare
JDDGAC_05645 +1.6 3.8 tRNA-Xxx compare
JDDGAC_25605 +1.5 8.7 Bbp17 compare
JDDGAC_04850 tyrR +1.5 2.7 transcriptional regulator TyrR compare
JDDGAC_06605 icd +1.4 2.6 NADP-dependent isocitrate dehydrogenase compare
JDDGAC_09320 +1.4 8.9 integrase compare
JDDGAC_01245 yeaO +1.4 2.3 Uncharacterized protein YeaO compare
JDDGAC_06825 +1.4 1.4 phage tail tape measure protein compare
JDDGAC_09190 +1.3 7.7 Baseplate protein W compare
JDDGAC_09165 +1.3 7.3 phage tail protein compare
JDDGAC_04485 +1.3 2.2 Holin compare
JDDGAC_09130 +1.3 6.4 putative baseplate hub protein compare
JDDGAC_09185 +1.2 7.6 Baseplate protein J compare
JDDGAC_03670 lsrC +1.2 2.0 autoinducer 2 ABC transporter permease LsrC compare
JDDGAC_15330 +1.2 2.2 P4 prophage-derived uncharacterized protein t2655 compare
JDDGAC_21520 arcB +1.2 3.8 aerobic respiration two-component sensor histidine kinase ArcB compare
JDDGAC_23565 +1.2 1.6 hypothetical protein compare
JDDGAC_09145 +1.2 4.8 Phage tail assembly chaperone proteins, E, or 41 or 14 compare
JDDGAC_09175 +1.2 5.8 Phage tail collar protein compare
JDDGAC_06125 prfA +1.2 1.4 peptide chain release factor 1 compare
JDDGAC_09265 +1.2 6.2 phage portal protein compare
JDDGAC_09920 espX2 +1.2 1.5 type III secretion system effector EspX2 compare
JDDGAC_09215 lysB +1.1 7.3 Rz-like lysis system protein LysB compare
JDDGAC_04170 ydcA +1.1 2.2 Uncharacterized protein YdcA compare
JDDGAC_09240 +1.1 9.5 Head completion/stabilization protein compare
JDDGAC_24790 smpB +1.1 2.6 SsrA-binding protein SmpB compare
JDDGAC_09140 +1.1 8.2 putative tape measure protein compare
JDDGAC_09260 +1.1 6.8 oxidoreductase compare
JDDGAC_19070 escG +1.1 1.9 type III secretion system LEE needle protein cochaperone EscG compare
JDDGAC_24160 rpoS +1.1 9.7 RNA polymerase sigma factor RpoS compare
JDDGAC_09160 spoIVCA +1.1 4.4 DNA-invertase compare
JDDGAC_25590 +1.1 6.0 Head to tail connecting protein compare
JDDGAC_25450 +1.0 3.1 DUF1382 domain-containing protein compare
JDDGAC_09180 +1.0 7.0 phage tail protein I compare
JDDGAC_09135 +1.0 5.7 phage tail protein compare
JDDGAC_03505 ydfJ +1.0 1.8 Putative transporter YdfJ compare
JDDGAC_09245 +1.0 5.4 Terminase, endonuclease subunit compare
JDDGAC_09205 +1.0 2.6 Tail completion protein R compare
JDDGAC_11390 tnp-ISAs1 +1.0 2.0 ISAs1 family transposase compare
JDDGAC_08750 +1.0 3.0 cell division inhibition protein DicB compare
JDDGAC_09155 +1.0 3.1 phage tail protein compare
JDDGAC_09225 +1.0 3.2 Endolysin compare
JDDGAC_27870 +1.0 1.9 terminase compare
JDDGAC_28130 fimA +1.0 3.5 Uncharacterized fimbrial-like protein YehD compare
JDDGAC_25905 yffB +1.0 2.3 ArsC family reductase compare
JDDGAC_15525 mgtL +0.9 1.8 mgtA leader peptide compare
JDDGAC_25610 +0.9 3.1 hypothetical protein compare
JDDGAC_27170 ada +0.9 2.4 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada compare
JDDGAC_11050 tatE +0.9 2.6 deaminated glutathione amidase compare
JDDGAC_20840 +0.9 1.2 Uncharacterized protein YhfG compare
JDDGAC_16125 ghoT +0.9 1.3 type V toxin-antitoxin system toxin GhoT compare
JDDGAC_24630 xerD +0.9 1.7 site-specific integrase compare
JDDGAC_08080 fhaC +0.9 2.2 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
JDDGAC_09270 +0.9 2.4 hypothetical protein compare
JDDGAC_25600 +0.9 2.5 peptidase compare
JDDGAC_03920 narW +0.9 2.6 nitrate reductase molybdenum cofactor assembly chaperone compare
JDDGAC_25635 +0.9 4.0 Acetyltransferase compare
JDDGAC_26875 elaD +0.8 1.7 ElaD/SseL family deubiquitinase compare
JDDGAC_12935 +0.8 1.6 hypothetical protein compare
JDDGAC_05075 yciZ +0.8 1.0 UPF0509 protein YciZ compare
JDDGAC_14890 holD +0.8 0.9 DNA polymerase III subunit psi compare
JDDGAC_30020 +0.8 1.9 hypothetical protein compare
JDDGAC_23510 +0.8 1.8 Transcriptional regulator compare
JDDGAC_25625 +0.8 3.6 hypothetical protein compare
JDDGAC_09250 +0.8 4.8 phage major capsid protein, P2 family compare
JDDGAC_01205 dmlR +0.8 0.7 DNA-binding transcriptional regulator DmlR compare
JDDGAC_29395 eCs1768 +0.8 2.1 phage replisome organizer compare
JDDGAC_01460 ydjZ +0.8 2.5 TVP38/TMEM64 family inner membrane protein YdjZ compare
JDDGAC_21325 yhdT +0.8 1.9 Uncharacterized membrane protein YhdT compare
JDDGAC_23980 ygcW +0.8 2.0 Uncharacterized oxidoreductase YgcW compare
JDDGAC_20525 glgC +0.8 6.6 glucose-1-phosphate adenylyltransferase compare
JDDGAC_16905 yjaB +0.8 1.9 acetyltransferase compare
JDDGAC_05275 +0.8 1.8 Mutator family transposase compare
JDDGAC_03310 +0.8 2.0 hypothetical protein compare
JDDGAC_13890 +0.8 1.4 Protein YadX compare
JDDGAC_09290 oRF81 +0.8 0.9 Uncharacterized protein in GpA 5'region compare
JDDGAC_08725 ydfA +0.8 2.3 Uncharacterized protein YdfA compare
JDDGAC_27145 rcsB +0.8 3.8 transcriptional regulator RcsB compare
JDDGAC_03190 +0.7 2.3 DUF977 domain-containing protein compare
JDDGAC_00755 yecT +0.7 1.8 Uncharacterized protein YecT compare
JDDGAC_27230 napH +0.7 2.6 quinol dehydrogenase ferredoxin subunit NapH compare
JDDGAC_25985 eutN +0.7 1.7 ethanolamine utilization microcompartment protein EutN compare
JDDGAC_05580 +0.7 1.1 hypothetical protein compare
JDDGAC_07155 ndh +0.7 1.5 NADH-quinone dehydrogenase compare
JDDGAC_07025 +0.7 1.4 DUF4406 domain-containing protein compare
JDDGAC_05785 +0.7 1.1 Hypothetical rem protein compare
JDDGAC_13290 Thr_trna +0.7 1.8 tRNA-Thr(cgt) compare
JDDGAC_07030 +0.7 2.2 DNA-binding protein compare
JDDGAC_01960 cfa +0.7 1.7 cyclopropane fatty acyl phospholipid synthase compare
JDDGAC_15895 hfq +0.7 5.1 RNA chaperone Hfq compare
JDDGAC_28205 +0.7 1.4 ADP-ribosylglycohydrolase family protein compare
JDDGAC_11375 +0.7 0.8 hypothetical protein compare
JDDGAC_13045 pinE +0.7 1.1 site-specific DNA recombinase compare
JDDGAC_25455 +0.7 3.2 adenine methylase compare
JDDGAC_00440 insI1 +0.7 2.1 IS30 family transposase compare
JDDGAC_07900 opgE +0.7 2.7 phosphoethanolamine transferase compare
JDDGAC_25460 +0.7 1.7 transcriptional regulator compare
JDDGAC_06130 hemA +0.7 3.0 glutamyl-tRNA reductase compare
JDDGAC_09150 +0.7 4.6 Tail tube protein compare
JDDGAC_17425 yiiR +0.7 1.2 Uncharacterized protein YiiR compare
JDDGAC_09210 lysC +0.7 1.9 Rz1-like lysis system protein LysC compare
JDDGAC_11365 +0.7 1.5 Uncharacterized conserved protein compare
JDDGAC_27845 +0.7 1.3 holin compare
JDDGAC_03335 +0.7 1.3 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_28615 hisB +0.7 1.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
JDDGAC_06440 +0.7 3.9 phage tail assembly protein T compare
JDDGAC_18070 cyaA +0.7 1.2 class I adenylate cyclase compare
JDDGAC_30080 flmC +0.7 1.1 Protein FlmC compare
JDDGAC_05810 +0.7 1.3 DNA-binding protein compare
JDDGAC_11315 nfsB +0.7 4.1 oxygen-insensitive NAD(P)H nitroreductase compare
JDDGAC_09990 moaD +0.7 0.9 molybdopterin synthase sulfur carrier subunit compare
JDDGAC_08445 lomR +0.7 0.7 Ail/Lom family protein compare
JDDGAC_25640 +0.7 2.3 Phage protein compare
JDDGAC_27045 +0.7 0.6 hypothetical protein compare
JDDGAC_21405 yhcO +0.7 3.1 Uncharacterized protein YhcO compare
JDDGAC_16130 ghoS +0.7 1.5 type V toxin-antitoxin system endoribonuclease antitoxin GhoS compare
JDDGAC_25565 +0.6 2.8 terminase small subunit compare
JDDGAC_00410 uvrC +0.6 2.7 excinuclease ABC subunit UvrC compare
JDDGAC_00910 zwf +0.6 1.3 glucose-6-phosphate dehydrogenase compare
JDDGAC_09255 +0.6 4.2 Capsid assembly scaffolding protein compare
JDDGAC_00935 yebF +0.6 1.0 Protein YebF compare
JDDGAC_25570 +0.6 4.3 Terminase compare
JDDGAC_13910 fhuC +0.6 1.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
JDDGAC_24970 yfiM +0.6 1.9 YfiM family lipoprotein compare
JDDGAC_07970 +0.6 2.0 hypothetical protein compare
JDDGAC_09220 lysA +0.6 3.2 Putative antiholin compare
JDDGAC_29355 +0.6 1.4 DUF4224 domain-containing protein compare
JDDGAC_27000 yfaU +0.6 1.6 2-keto-3-deoxy-L-rhamnonate aldolase compare
JDDGAC_25630 +0.6 4.9 hypothetical protein compare
JDDGAC_25465 +0.6 2.3 transcriptional regulator compare
JDDGAC_06840 +0.6 2.2 phage tail protein compare
JDDGAC_00635 yecJ +0.6 0.6 Uncharacterized protein YecJ compare
JDDGAC_03900 espR1 +0.6 1.7 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_25245 hcaC +0.6 1.8 bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit compare
JDDGAC_24535 stpA +0.6 1.4 DNA-binding protein StpA compare
JDDGAC_13205 +0.6 1.6 DUF968 domain-containing protein compare
JDDGAC_25585 +0.6 3.0 hypothetical protein compare
JDDGAC_25595 +0.6 1.2 Phage protein compare
JDDGAC_15050 +0.6 1.1 Putative transposase, YhgA-like compare
JDDGAC_13180 +0.6 2.2 lysozyme compare
JDDGAC_03590 marR +0.6 1.6 multiple antibiotic resistance transcriptional regulator MarR compare
JDDGAC_25705 +0.6 1.8 endolysin compare
JDDGAC_29175 yeeT +0.6 1.1 Uncharacterized protein YeeT compare
JDDGAC_05245 espM1 +0.6 0.7 T3SS effector guanine nucleotide exchange factor EspM1 compare
JDDGAC_25680 +0.6 2.5 hypothetical protein compare
JDDGAC_07660 tnp-IS1 +0.6 1.4 IS1 family transposase compare
JDDGAC_13985 fimA +0.6 1.6 fimbrial-like protein compare
JDDGAC_03985 vgrG,tssI +0.6 2.0 type VI secretion system effector VgrG compare
JDDGAC_03115 +0.6 1.8 site-specific integrase compare
JDDGAC_28460 fcl +0.6 1.6 GDP-L-fucose synthase compare
JDDGAC_01095 manZ +0.6 2.2 PTS mannose transporter subunit IID compare
JDDGAC_06235 nhaB +0.6 2.2 Na(+)/H(+) antiporter NhaB compare
JDDGAC_01225 yeaQ +0.6 0.8 UPF0410 protein YeaQ compare
JDDGAC_26775 hxpA +0.6 2.3 hexitol phosphatase HxpA compare
JDDGAC_02170 add +0.6 0.9 adenosine deaminase compare
JDDGAC_20515 glgB +0.6 4.6 1,4-alpha-glucan branching enzyme compare
JDDGAC_13700 yaeP +0.6 2.6 YaeP family protein compare
JDDGAC_00525 +0.6 1.0 derepression protein compare
JDDGAC_24605 +0.6 1.3 DUF5508 domain-containing protein compare
JDDGAC_30070 psiA +0.6 2.7 Protein PsiA compare
JDDGAC_13105 +0.6 1.0 Phage Mu small tail protein compare
JDDGAC_09125 ogrK +0.6 2.5 prophage transcriptional regulator OgrK compare
JDDGAC_01920 +0.6 0.7 FAD/NAD(P)-binding protein compare
JDDGAC_25695 +0.6 1.1 Putative phage holin compare
JDDGAC_19640 yiaG +0.5 2.3 HTH-type transcriptional regulator compare
JDDGAC_21270 +0.5 1.3 hypothetical protein compare
JDDGAC_17905 tatB +0.5 0.7 Sec-independent protein translocase protein TatB compare
JDDGAC_30320 gspI +0.5 1.9 type II secretion system minor pseudopilin GspI compare
JDDGAC_01690 nlpC +0.5 1.7 putative endopeptidase NlpC compare
JDDGAC_29425 +0.5 0.8 Prophage protein compare
JDDGAC_20510 yhgO +0.5 1.0 Protein YhgO compare
JDDGAC_03595 marC +0.5 1.9 NAAT family transporter MarC compare
JDDGAC_07740 terZ +0.5 1.6 tellurium resistance-associated protein TerZ compare
JDDGAC_10205 +0.5 1.2 Putative bacteriophage protein (Gene 65) compare
JDDGAC_22405 +0.5 2.2 Surface composition regulator compare
JDDGAC_12140 parD +0.5 1.4 Antitoxin ParD compare
JDDGAC_06905 +0.5 0.6 hypothetical protein compare
JDDGAC_10320 ybhH +0.5 2.3 4-oxalomesaconate tautomerase compare
JDDGAC_08730 ydfB +0.5 0.7 Uncharacterized protein YdfB compare
JDDGAC_29405 +0.5 1.6 DUF1627 domain-containing protein compare
JDDGAC_19365 yibN +0.5 1.7 Uncharacterized protein YibN compare
JDDGAC_18920 escS +0.5 1.5 type III secretion system LEE export apparatus protein EscS compare
JDDGAC_14305 leuL +0.5 2.5 leu operon leader peptide compare
JDDGAC_05895 yciA +0.5 1.8 acyl-CoA thioester hydrolase YciA compare
JDDGAC_10560 lysR +0.5 2.1 LysR family transcriptional regulator compare
JDDGAC_01200 dmlA +0.5 1.5 multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase compare
JDDGAC_25495 +0.5 0.8 hypothetical protein compare
JDDGAC_15250 +0.5 0.5 Orf compare
JDDGAC_03725 ydeR +0.5 1.0 Uncharacterized fimbrial-like protein YdeR compare
JDDGAC_07000 +0.5 0.9 DUF551 domain-containing protein compare
JDDGAC_13250 +0.5 0.7 XRE family transcriptional regulator compare
JDDGAC_04110 tehB +0.5 0.8 tellurite resistance methyltransferase TehB compare
JDDGAC_04985 puuD +0.5 1.4 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
JDDGAC_09600 ybjN +0.5 1.2 Uncharacterized protein YbjN compare
JDDGAC_10450 cpoB +0.5 1.6 cell division protein CpoB compare
JDDGAC_11060 crcB +0.5 1.1 fluoride efflux transporter CrcB compare
JDDGAC_26745 yfcD +0.5 0.7 NUDIX hydrolase YfcD compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms