Experiment set2S226 for Escherichia coli ECRC98

Compare to:

WM_K30

200 most important genes:

  gene name fitness t score description  
JDDGAC_28540 rfbE -6.5 -3.4 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_25875 purC -6.5 -8.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_27740 -6.1 -1.9 regulator compare
JDDGAC_25435 guaB -5.8 -4.0 IMP dehydrogenase compare
JDDGAC_19305 rfaB -5.7 -9.1 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
JDDGAC_10355 acrZ -5.7 -1.7 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_19290 waaO -5.4 -6.4 lipopolysaccharide 3-alpha-galactosyltransferase compare
JDDGAC_16935 purH -5.2 -18.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_25135 purL -5.1 -22.0 phosphoribosylformylglycinamidine synthase compare
JDDGAC_19300 rfaJ -5.1 -5.3 glucosyltransferase compare
JDDGAC_21580 lptC -4.9 -1.7 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_28575 perB -4.9 -5.1 GDP-perosamine N-acetyltransferase compare
JDDGAC_19310 rfaL -4.7 -7.0 O-antigen ligase RfaL compare
JDDGAC_26675 purF -4.6 -12.8 amidophosphoribosyltransferase compare
JDDGAC_18205 wecA -4.6 -18.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_19280 rfaG -4.6 -8.7 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_15870 purA -4.5 -3.1 adenylosuccinate synthase compare
JDDGAC_25750 purN -4.3 -9.6 phosphoribosylglycinamide formyltransferase compare
JDDGAC_25755 purM -4.3 -11.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_28510 -4.2 -13.4 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_28520 wcaA -4.2 -2.5 glycosyl transferase compare
JDDGAC_16940 purD -4.1 -8.1 Phosphoribosylamine--glycine ligase compare
JDDGAC_19320 rfaF -4.0 -2.8 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_11490 purK -3.8 -9.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_25440 guaA -3.6 -2.4 glutamine-hydrolyzing GMP synthase compare
JDDGAC_18215 trxA -3.5 -2.4 thioredoxin TrxA compare
JDDGAC_05985 galU -3.5 -3.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_14795 serB -3.5 -6.0 phosphoserine phosphatase compare
JDDGAC_17735 glnG -3.2 -3.3 nitrogen regulation protein NR(I) compare
JDDGAC_14440 apaH -3.1 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_25045 rseA -3.1 -3.3 anti-sigma-E factor RseA compare
JDDGAC_09385 lrp -3.0 -6.1 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_11470 cysS -3.0 -1.6 cysteine--tRNA ligase compare
JDDGAC_14890 holD -2.9 -1.2 DNA polymerase III subunit psi compare
JDDGAC_23100 serA -2.8 -8.5 phosphoglycerate dehydrogenase compare
JDDGAC_26670 cvpA -2.7 -4.1 colicin V production protein compare
JDDGAC_28525 wzy -2.7 -2.9 O157 family O-antigen polymerase compare
JDDGAC_03805 ddpX -2.7 -2.8 D-alanyl-D-alanine dipeptidase compare
JDDGAC_24045 cysH -2.6 -6.4 phosphoadenosine phosphosulfate reductase compare
JDDGAC_25690 -2.6 -2.4 acyltransferase compare
JDDGAC_09100 serC -2.6 -10.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_22885 yggS -2.6 -4.8 pyridoxal phosphate homeostasis protein compare
JDDGAC_11485 purE -2.5 -4.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_29975 sopA -2.4 -4.8 plasmid-partitioning protein SopA compare
JDDGAC_15675 cysQ -2.3 -9.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_10470 tolR -2.3 -2.1 colicin uptake protein TolR compare
JDDGAC_24115 cysC -2.2 -10.3 Adenylyl-sulfate kinase compare
JDDGAC_00825 nudB -2.2 -1.6 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_11835 rsmS -2.1 -1.8 pleiotropic regulatory protein RsmS compare
JDDGAC_13640 gmhB -2.0 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
JDDGAC_13940 dksA -2.0 -6.6 RNA polymerase-binding protein DksA compare
JDDGAC_24035 cysJ -1.8 -9.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_14710 thrL -1.8 -4.3 thr operon leader peptide compare
JDDGAC_18405 mnmG -1.8 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_17715 typA -1.8 -10.4 ribosome-dependent GTPase TypA compare
JDDGAC_24040 cysI -1.7 -6.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_14075 acnB -1.7 -2.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_20740 aroK -1.7 -2.0 shikimate kinase AroK compare
JDDGAC_10460 tolB -1.7 -5.1 Tol-Pal system protein TolB compare
JDDGAC_19285 rfaP -1.6 -3.2 lipopolysaccharide core heptose(I) kinase RfaP compare
JDDGAC_11235 fepD -1.5 -3.7 ferrienterobactin ABC transporter permease compare
JDDGAC_18020 corA -1.5 -2.3 magnesium/cobalt transporter CorA compare
JDDGAC_05950 -1.5 -1.7 hypothetical protein compare
JDDGAC_10810 nagB -1.5 -6.2 glucosamine-6-phosphate deaminase compare
JDDGAC_14705 thrA -1.4 -10.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
JDDGAC_10570 sucC -1.4 -3.9 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_15395 -1.4 -1.1 XRE family transcriptional regulator compare
JDDGAC_14700 thrB -1.4 -7.5 homoserine kinase compare
JDDGAC_10465 tolA -1.4 -1.8 cell envelope integrity protein TolA compare
JDDGAC_28800 -1.4 -1.5 XRE family transcriptional regulator compare
JDDGAC_02140 rsxB -1.3 -2.4 electron transport complex subunit RsxB compare
JDDGAC_11225 fepB -1.3 -3.7 ferrienterobactin ABC transporter periplasmic binding protein compare
JDDGAC_06135 lolB -1.3 -1.9 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_11240 fepG -1.3 -3.0 iron-enterobactin ABC transporter permease compare
JDDGAC_14695 thrC -1.3 -4.5 threonine synthase compare
JDDGAC_17455 pfkA -1.3 -3.1 6-phosphofructokinase compare
JDDGAC_21770 nlpI -1.2 -6.7 lipoprotein NlpI compare
JDDGAC_19535 hycB -1.2 -1.5 electron transporter compare
JDDGAC_06305 minE -1.2 -1.0 cell division topological specificity factor MinE compare
JDDGAC_09290 oRF81 -1.2 -0.9 Uncharacterized protein in GpA 5'region compare
JDDGAC_20355 -1.2 -2.8 DUF1778 domain-containing protein compare
JDDGAC_04130 ydcH -1.2 -1.5 Uncharacterized protein YdcH compare
JDDGAC_09810 mntR -1.2 -2.1 manganese-binding transcriptional regulator MntR compare
JDDGAC_23140 ygfB -1.1 -1.6 UPF0149 family protein YgfB compare
JDDGAC_06670 -1.1 -2.1 hypothetical protein compare
JDDGAC_01035 proQ -1.1 -3.1 RNA chaperone ProQ compare
JDDGAC_12140 parD -1.1 -1.4 Antitoxin ParD compare
JDDGAC_13950 pcnB -1.1 -3.1 polynucleotide adenylyltransferase PcnB compare
JDDGAC_00970 holE -1.1 -1.0 DNA polymerase III subunit theta compare
JDDGAC_09815 mntS -1.1 -1.1 manganase accumulation protein MntS compare
JDDGAC_11245 fepC -1.0 -3.2 ferrienterobactin ABC transporter ATPase compare
JDDGAC_06700 -1.0 -1.5 DUF4222 domain-containing protein compare
JDDGAC_04785 fnr -1.0 -2.5 fumarate/nitrate reduction transcriptional regulator Fnr compare
JDDGAC_16385 ytcA -1.0 -1.0 Uncharacterized protein YtcA compare
JDDGAC_06690 -1.0 -2.5 hypothetical protein compare
JDDGAC_10475 tolQ -1.0 -2.2 Tol-Pal system protein TolQ compare
JDDGAC_21765 pnp -1.0 -4.5 polyribonucleotide nucleotidyltransferase compare
JDDGAC_03285 -1.0 -1.7 DUF968 domain-containing protein compare
JDDGAC_01260 yeaL -1.0 -1.9 UPF0756 membrane protein CKO_01811 compare
JDDGAC_30080 flmC -1.0 -1.0 Protein FlmC compare
JDDGAC_22600 exbB -1.0 -4.2 tol-pal system-associated acyl-CoA thioesterase compare
JDDGAC_01040 prc -1.0 -4.2 carboxy terminal-processing peptidase compare
JDDGAC_01695 ydiV -0.9 -1.9 anti-FlhDC factor compare
JDDGAC_18070 cyaA -0.9 -1.2 class I adenylate cyclase compare
JDDGAC_29920 -0.9 -1.0 hypothetical protein compare
JDDGAC_05245 espM1 -0.9 -1.4 T3SS effector guanine nucleotide exchange factor EspM1 compare
JDDGAC_02120 rsxE -0.9 -2.2 electron transport complex subunit RsxE compare
JDDGAC_10565 sucD -0.9 -1.9 succinate--CoA ligase subunit alpha compare
JDDGAC_02470 -0.9 -1.4 DNA-binding protein compare
JDDGAC_04780 ogt -0.9 -1.7 methylated-DNA--[protein]-cysteine S-methyltransferase compare
JDDGAC_28700 -0.9 -1.2 DUF551 domain-containing protein compare
JDDGAC_23165 gcvH -0.9 -3.3 glycine cleavage system protein GcvH compare
JDDGAC_26745 yfcD -0.9 -1.3 NUDIX hydrolase YfcD compare
JDDGAC_14420 surA -0.9 -1.6 peptidylprolyl isomerase SurA compare
JDDGAC_27270 dsbE -0.9 -1.1 thiol:disulfide interchange protein DsbE compare
JDDGAC_25955 eutS -0.9 -1.8 Bacterial microcompartment shell protein EutS compare
JDDGAC_10765 ybfE -0.9 -2.9 LexA regulated protein compare
JDDGAC_03640 uxaB -0.8 -1.7 tagaturonate reductase compare
JDDGAC_15570 yjgA -0.8 -3.6 ribosome-associated protein compare
JDDGAC_16680 yjbJ -0.8 -2.3 UPF0337 protein YjbJ compare
JDDGAC_18525 -0.8 -1.6 hypothetical protein compare
JDDGAC_27240 ccmA -0.8 -1.6 cytochrome c biogenesis heme-transporting ATPase CcmA compare
JDDGAC_20810 cysG -0.8 -5.2 siroheme synthase CysG compare
JDDGAC_08270 yccJ -0.8 -2.1 Uncharacterized protein YccJ compare
JDDGAC_25025 srmB -0.8 -3.8 ATP-dependent RNA helicase SrmB compare
JDDGAC_07385 yceB -0.8 -2.8 lipoprotein compare
JDDGAC_05135 -0.8 -1.4 Protein, C-ter, truncated protein compare
JDDGAC_06130 hemA -0.8 -2.6 glutamyl-tRNA reductase compare
JDDGAC_15250 -0.8 -0.6 Orf compare
JDDGAC_26850 nuoK -0.8 -1.9 NADH-quinone oxidoreductase subunit NuoK compare
JDDGAC_20745 aroB -0.8 -3.2 3-dehydroquinate synthase compare
JDDGAC_27880 -0.8 -1.4 Phage protein compare
JDDGAC_25515 -0.8 -1.1 DUF1064 domain-containing protein compare
JDDGAC_22605 exbD -0.8 -3.1 TonB system transport protein ExbD compare
JDDGAC_25290 iscR -0.8 -2.7 Fe-S cluster assembly transcriptional regulator IscR compare
JDDGAC_06530 -0.8 -2.2 lysozyme compare
JDDGAC_14435 apaG -0.8 -1.4 Co2+/Mg2+ efflux protein ApaG compare
JDDGAC_02200 lacZ -0.8 -0.9 Beta-galactosidase/beta-glucuronidase compare
JDDGAC_06680 -0.8 -2.1 PerC family transcriptional regulator compare
JDDGAC_01060 yobH -0.8 -1.4 Uncharacterized protein YobH compare
JDDGAC_20840 -0.8 -1.3 Uncharacterized protein YhfG compare
JDDGAC_18035 uvrD -0.8 -4.0 DNA helicase II compare
JDDGAC_05995 rssA -0.8 -2.0 patatin-like phospholipase RssA compare
JDDGAC_05710 -0.8 -0.8 phage tail protein compare
JDDGAC_23565 -0.8 -0.7 hypothetical protein compare
JDDGAC_11265 fes -0.8 -2.0 enterobactin/ferric enterobactin esterase compare
JDDGAC_19275 rfaQ -0.8 -3.3 lipopolysaccharide core heptosyltransferase RfaQ compare
JDDGAC_23065 -0.8 -1.5 Putative acetyl-CoA hydrolase/transferase compare
JDDGAC_25480 -0.8 -3.4 hypothetical protein compare
JDDGAC_00225 yodD -0.8 -2.6 YodD family peroxide/acid resistance protein compare
JDDGAC_00890 lpxM -0.8 -2.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
JDDGAC_30055 yubL -0.8 -1.1 UPF0401 protein YubL compare
JDDGAC_29980 sopA -0.8 -0.9 plasmid-partitioning protein SopA compare
JDDGAC_05885 yciC -0.8 -2.0 envelope biogenesis factor ElyC compare
JDDGAC_10285 -0.8 -0.8 Cell division protein ZapA compare
JDDGAC_00395 yecC -0.8 -2.8 L-cystine ABC transporter ATP-binding protein YecC compare
JDDGAC_29110 -0.8 -2.5 host specificity protein J compare
JDDGAC_12920 -0.8 -1.4 hypothetical protein compare
JDDGAC_04235 ynbC -0.7 -2.3 Uncharacterized protein YnbC compare
JDDGAC_08655 -0.7 -3.4 Endodeoxyribonuclease RusA compare
JDDGAC_25745 ppk1 -0.7 -4.0 polyphosphate kinase 1 compare
JDDGAC_06625 hflD -0.7 -1.8 high frequency lysogenization protein HflD compare
JDDGAC_29030 -0.7 -1.2 Putative prophage portal protein compare
JDDGAC_05600 rrrD -0.7 -1.8 endolysin compare
JDDGAC_00570 -0.7 -2.9 hypothetical protein compare
JDDGAC_09710 dgcI -0.7 -1.4 putative diguanylate cyclase DgcI compare
JDDGAC_02130 rsxD -0.7 -3.7 electron transport complex subunit RsxD compare
JDDGAC_27665 -0.7 -1.5 DUF551 domain-containing protein compare
JDDGAC_08995 aspC -0.7 -2.2 aspartate transaminase compare
JDDGAC_25710 -0.7 -1.8 DUF2514 domain-containing protein compare
JDDGAC_21510 gltB -0.7 -5.9 glutamate synthase large subunit compare
JDDGAC_21505 gltD -0.7 -4.9 glutamate synthase subunit GltD compare
JDDGAC_25560 -0.7 -4.3 hypothetical protein compare
JDDGAC_10920 rihA -0.7 -2.4 pyrimidine-specific ribonucleoside hydrolase RihA compare
JDDGAC_14455 -0.7 -1.6 Dihydrofolate reductase compare
JDDGAC_08790 yccX -0.7 -1.8 acylphosphatase compare
JDDGAC_01075 rlmA -0.7 -2.1 23S rRNA (guanine(745)-N(1))-methyltransferase compare
JDDGAC_23660 ygdT -0.7 -1.6 Protein YgdT compare
JDDGAC_00950 yebE -0.7 -2.0 Inner membrane protein YebE compare
JDDGAC_10815 nagA -0.7 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
JDDGAC_06755 -0.7 -0.9 hypothetical protein compare
JDDGAC_09600 ybjN -0.7 -1.4 Uncharacterized protein YbjN compare
JDDGAC_14430 rsmA -0.7 -1.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_16550 -0.7 -2.9 hypothetical protein compare
JDDGAC_25085 recO -0.7 -3.2 DNA repair protein RecO compare
JDDGAC_27785 rusA -0.7 -0.6 crossover junction endodeoxyribonuclease RusA compare
JDDGAC_19215 rph -0.7 -2.1 ribonuclease PH compare
JDDGAC_24340 srlB -0.7 -1.1 PTS glucitol/sorbitol transporter subunit IIA compare
JDDGAC_15630 ytfP -0.7 -3.4 Gamma-glutamylcyclotransferase family protein YtfP compare
JDDGAC_06430 -0.7 -0.8 phage tail protein compare
JDDGAC_20320 yhhL -0.7 -1.4 DUF1145 domain-containing protein compare
JDDGAC_30195 repA -0.7 -0.9 incFII family plasmid replication initiator RepA compare
JDDGAC_20435 -0.7 -1.0 hypothetical protein compare
JDDGAC_07690 -0.7 -1.5 IS150 conserved protein InsB compare
JDDGAC_00350 fliT -0.7 -1.9 flagella biosynthesis regulatory protein FliT compare
JDDGAC_11130 rnk -0.7 -1.5 nucleoside diphosphate kinase regulator compare
JDDGAC_05530 -0.7 -0.6 hypothetical protein compare
JDDGAC_09985 moaE -0.7 -1.5 molybdopterin synthase catalytic subunit MoaE compare
JDDGAC_25415 bamB -0.7 -2.3 outer membrane protein assembly factor BamB compare
JDDGAC_01280 yeaH -0.6 -2.1 UPF0229 protein YeaH compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms