Experiment set2S225 for Escherichia coli ECRC98

Compare to:

WM_K30

200 most important genes:

  gene name fitness t score description  
JDDGAC_27740 -6.2 -1.9 regulator compare
JDDGAC_25135 purL -6.0 -27.1 phosphoribosylformylglycinamidine synthase compare
JDDGAC_25435 guaB -5.9 -4.1 IMP dehydrogenase compare
JDDGAC_16935 purH -5.8 -19.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_10355 acrZ -5.7 -1.7 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_19305 rfaB -5.6 -9.3 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
JDDGAC_26675 purF -5.6 -16.9 amidophosphoribosyltransferase compare
JDDGAC_25755 purM -5.5 -13.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_11490 purK -4.9 -8.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_19280 rfaG -4.6 -12.6 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_16940 purD -4.5 -8.0 Phosphoribosylamine--glycine ligase compare
JDDGAC_15870 purA -4.5 -3.1 adenylosuccinate synthase compare
JDDGAC_25750 purN -4.2 -8.1 phosphoribosylglycinamide formyltransferase compare
JDDGAC_11485 purE -4.2 -4.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_19320 rfaF -4.1 -2.8 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_28575 perB -4.0 -4.3 GDP-perosamine N-acetyltransferase compare
JDDGAC_21580 lptC -4.0 -3.1 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_14795 serB -3.9 -5.6 phosphoserine phosphatase compare
JDDGAC_19300 rfaJ -3.9 -4.6 glucosyltransferase compare
JDDGAC_18205 wecA -3.7 -17.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_05985 galU -3.7 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_19310 rfaL -3.6 -8.6 O-antigen ligase RfaL compare
JDDGAC_28510 -3.6 -10.7 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_25440 guaA -3.6 -2.5 glutamine-hydrolyzing GMP synthase compare
JDDGAC_25875 purC -3.5 -4.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_15675 cysQ -3.4 -7.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_26670 cvpA -3.3 -4.9 colicin V production protein compare
JDDGAC_25045 rseA -3.1 -4.2 anti-sigma-E factor RseA compare
JDDGAC_19290 waaO -3.1 -5.2 lipopolysaccharide 3-alpha-galactosyltransferase compare
JDDGAC_22885 yggS -3.1 -7.4 pyridoxal phosphate homeostasis protein compare
JDDGAC_09100 serC -3.1 -8.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_14440 apaH -3.0 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_09920 espX2 -2.9 -2.0 type III secretion system effector EspX2 compare
JDDGAC_23100 serA -2.8 -9.4 phosphoglycerate dehydrogenase compare
JDDGAC_14420 surA -2.7 -4.2 peptidylprolyl isomerase SurA compare
JDDGAC_10470 tolR -2.7 -3.0 colicin uptake protein TolR compare
JDDGAC_18405 mnmG -2.7 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_27425 yeiL -2.5 -1.5 Regulatory protein YeiL compare
JDDGAC_28525 wzy -2.5 -4.3 O157 family O-antigen polymerase compare
JDDGAC_15395 -2.4 -1.7 XRE family transcriptional regulator compare
JDDGAC_14450 -2.4 -2.5 antitoxin compare
JDDGAC_04130 ydcH -2.4 -2.2 Uncharacterized protein YdcH compare
JDDGAC_24045 cysH -2.3 -6.9 phosphoadenosine phosphosulfate reductase compare
JDDGAC_28520 wcaA -2.3 -2.3 glycosyl transferase compare
JDDGAC_25065 lepA -2.3 -2.9 translation elongation factor 4 compare
JDDGAC_09385 lrp -2.2 -3.5 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_24035 cysJ -2.0 -11.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_10285 -2.0 -1.5 Cell division protein ZapA compare
JDDGAC_13940 dksA -2.0 -7.9 RNA polymerase-binding protein DksA compare
JDDGAC_19100 -2.0 -1.4 Aec79 compare
JDDGAC_15900 miaA -1.9 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_29975 sopA -1.9 -3.6 plasmid-partitioning protein SopA compare
JDDGAC_02140 rsxB -1.8 -2.0 electron transport complex subunit RsxB compare
JDDGAC_20740 aroK -1.8 -3.0 shikimate kinase AroK compare
JDDGAC_17715 typA -1.7 -9.1 ribosome-dependent GTPase TypA compare
JDDGAC_24115 cysC -1.7 -8.8 Adenylyl-sulfate kinase compare
JDDGAC_15250 -1.6 -1.0 Orf compare
JDDGAC_10475 tolQ -1.6 -2.9 Tol-Pal system protein TolQ compare
JDDGAC_14705 thrA -1.6 -10.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
JDDGAC_24040 cysI -1.6 -7.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_10465 tolA -1.6 -1.9 cell envelope integrity protein TolA compare
JDDGAC_06230 fadR -1.5 -2.1 fatty acid metabolism transcriptional regulator FadR compare
JDDGAC_13015 -1.5 -2.0 Phage-associated protein compare
JDDGAC_02310 ydgU -1.5 -1.9 Uncharacterized protein YdgU compare
JDDGAC_02220 -1.5 -0.9 Putative outer membrane porin protein compare
JDDGAC_25025 srmB -1.5 -6.7 ATP-dependent RNA helicase SrmB compare
JDDGAC_18020 corA -1.5 -2.3 magnesium/cobalt transporter CorA compare
JDDGAC_25690 -1.4 -1.6 acyltransferase compare
JDDGAC_06265 ycgN -1.4 -1.8 YcgN family cysteine cluster protein compare
JDDGAC_18070 cyaA -1.4 -1.8 class I adenylate cyclase compare
JDDGAC_28540 rfbE -1.4 -1.6 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_06755 -1.4 -1.1 hypothetical protein compare
JDDGAC_22605 exbD -1.4 -3.9 TonB system transport protein ExbD compare
JDDGAC_28955 rrrD -1.4 -2.0 lysozyme RrrD compare
JDDGAC_10070 nleB2 -1.4 -1.0 type III secretion system effector arginine glycosyltransferase NleB2 compare
JDDGAC_14075 acnB -1.4 -2.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_10460 tolB -1.4 -4.2 Tol-Pal system protein TolB compare
JDDGAC_13050 -1.4 -1.5 phage tail protein compare
JDDGAC_14700 thrB -1.3 -6.1 homoserine kinase compare
JDDGAC_13950 pcnB -1.3 -3.7 polynucleotide adenylyltransferase PcnB compare
JDDGAC_01960 cfa -1.3 -1.8 cyclopropane fatty acyl phospholipid synthase compare
JDDGAC_11225 fepB -1.3 -3.3 ferrienterobactin ABC transporter periplasmic binding protein compare
JDDGAC_14695 thrC -1.3 -4.4 threonine synthase compare
JDDGAC_05950 -1.3 -2.1 hypothetical protein compare
JDDGAC_08190 efeU -1.3 -2.1 Ferrous iron permease EfeU compare
JDDGAC_06645 -1.3 -2.9 hypothetical protein compare
JDDGAC_05690 -1.3 -2.1 phage tail protein compare
JDDGAC_06890 -1.2 -1.0 HNH endonuclease compare
JDDGAC_10455 pal -1.2 -2.3 peptidoglycan-associated lipoprotein Pal compare
JDDGAC_14710 thrL -1.2 -2.2 thr operon leader peptide compare
JDDGAC_29980 sopA -1.2 -0.9 plasmid-partitioning protein SopA compare
JDDGAC_17125 5S_rrna -1.2 -1.5 5S ribosomal RNA compare
JDDGAC_01035 proQ -1.2 -3.7 RNA chaperone ProQ compare
JDDGAC_15570 yjgA -1.2 -4.4 ribosome-associated protein compare
JDDGAC_00120 -1.2 -1.6 tRNA-Xxx compare
JDDGAC_13175 rzpD -1.1 -1.2 prophage endopeptidase RzpD compare
JDDGAC_11235 fepD -1.1 -1.5 ferrienterobactin ABC transporter permease compare
JDDGAC_06690 -1.1 -4.0 hypothetical protein compare
JDDGAC_08730 ydfB -1.1 -1.3 Uncharacterized protein YdfB compare
JDDGAC_10815 nagA -1.1 -3.3 N-acetylglucosamine-6-phosphate deacetylase compare
JDDGAC_21770 nlpI -1.1 -6.1 lipoprotein NlpI compare
JDDGAC_10570 sucC -1.1 -2.6 ADP-forming succinate--CoA ligase subunit beta compare
JDDGAC_19285 rfaP -1.1 -2.4 lipopolysaccharide core heptose(I) kinase RfaP compare
JDDGAC_00350 fliT -1.1 -1.6 flagella biosynthesis regulatory protein FliT compare
JDDGAC_21780 deaD -1.1 -3.0 ATP-dependent RNA helicase DeaD compare
JDDGAC_24685 -1.1 -1.8 protein NinG compare
JDDGAC_03730 ydeQ -1.1 -0.9 Uncharacterized fimbrial-like protein YdeQ compare
JDDGAC_04895 ycjR -1.1 -2.0 3-dehydro-D-guloside 4-epimerase compare
JDDGAC_05605 -1.1 -2.0 hypothetical protein compare
JDDGAC_02130 rsxD -1.1 -4.7 electron transport complex subunit RsxD compare
JDDGAC_10810 nagB -1.0 -2.4 glucosamine-6-phosphate deaminase compare
JDDGAC_19275 rfaQ -1.0 -3.8 lipopolysaccharide core heptosyltransferase RfaQ compare
JDDGAC_20930 yheO -1.0 -1.4 Uncharacterized protein YheO compare
JDDGAC_07640 -1.0 -1.2 DNA-binding protein compare
JDDGAC_07480 -1.0 -1.4 Uncharacterized protein YmdA compare
JDDGAC_06565 ybcN -1.0 -1.1 Uncharacterized protein YbcN compare
JDDGAC_00485 gpA1 -1.0 -1.3 Phage terminase, large subunit GpA compare
JDDGAC_20355 -1.0 -1.6 DUF1778 domain-containing protein compare
JDDGAC_11470 cysS -1.0 -0.9 cysteine--tRNA ligase compare
JDDGAC_20070 pitA -1.0 -3.1 inorganic phosphate transporter PitA compare
JDDGAC_05535 -1.0 -1.0 hypothetical protein compare
JDDGAC_30180 repA2 -1.0 -4.8 Replication regulatory protein repA2 compare
JDDGAC_05245 espM1 -1.0 -1.3 T3SS effector guanine nucleotide exchange factor EspM1 compare
JDDGAC_01440 ynjD -1.0 -1.5 Uncharacterized ABC transporter ATP-binding protein YnjD compare
JDDGAC_21765 pnp -1.0 -3.4 polyribonucleotide nucleotidyltransferase compare
JDDGAC_16970 hupA -1.0 -3.3 DNA-binding protein HU-alpha compare
JDDGAC_07690 -1.0 -2.1 IS150 conserved protein InsB compare
JDDGAC_17455 pfkA -0.9 -2.0 6-phosphofructokinase compare
JDDGAC_10565 sucD -0.9 -2.0 succinate--CoA ligase subunit alpha compare
JDDGAC_10225 -0.9 -1.0 DUF3927 domain-containing protein compare
JDDGAC_02145 rsxA -0.9 -0.9 electron transport complex subunit RsxA compare
JDDGAC_03230 -0.9 -1.9 Ead/Ea22-like protein compare
JDDGAC_06065 ychN -0.9 -1.2 DsrE/F sulfur relay family protein YchN compare
JDDGAC_08995 aspC -0.9 -1.7 aspartate transaminase compare
JDDGAC_04785 fnr -0.9 -1.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
JDDGAC_27665 -0.9 -1.6 DUF551 domain-containing protein compare
JDDGAC_23365 Gly_trna -0.9 -1.6 tRNA-Gly(ccc) compare
JDDGAC_30080 flmC -0.9 -0.7 Protein FlmC compare
JDDGAC_11265 fes -0.8 -2.0 enterobactin/ferric enterobactin esterase compare
JDDGAC_26060 yfeZ -0.8 -2.2 Inner membrane protein YfeZ compare
JDDGAC_06615 nudJ -0.8 -1.3 phosphatase NudJ compare
JDDGAC_01730 ydiT -0.8 -1.9 Ferredoxin-like protein YdiT compare
JDDGAC_00890 lpxM -0.8 -2.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
JDDGAC_01220 yoaG -0.8 -1.3 Protein YoaG compare
JDDGAC_21730 nusA -0.8 -1.1 Transcription termination/antitermination protein NusA compare
JDDGAC_01040 prc -0.8 -4.0 carboxy terminal-processing peptidase compare
JDDGAC_24260 hycF -0.8 -1.3 formate hydrogenlyase subunit HycF compare
JDDGAC_23065 -0.8 -2.6 Putative acetyl-CoA hydrolase/transferase compare
JDDGAC_01600 yniA -0.8 -0.8 putative ketoamine kinase YniA compare
JDDGAC_09815 mntS -0.8 -0.6 manganase accumulation protein MntS compare
JDDGAC_27880 -0.8 -1.3 Phage protein compare
JDDGAC_06430 -0.8 -0.9 phage tail protein compare
JDDGAC_23435 -0.8 -1.7 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
JDDGAC_02315 asr -0.8 -1.1 acid resistance repetitive basic protein Asr compare
JDDGAC_27785 rusA -0.8 -0.7 crossover junction endodeoxyribonuclease RusA compare
JDDGAC_19635 cspA -0.8 -1.0 Major cold shock protein compare
JDDGAC_28830 -0.8 -2.0 Endonuclease compare
JDDGAC_03285 -0.8 -1.1 DUF968 domain-containing protein compare
JDDGAC_24220 hypC -0.8 -1.8 hydrogenase 3 maturation protein HypC compare
JDDGAC_15450 holC -0.7 -1.9 DNA polymerase III subunit chi compare
JDDGAC_25515 -0.7 -1.3 DUF1064 domain-containing protein compare
JDDGAC_20700 igaA -0.7 -1.3 intracellular growth attenuator protein IgaA compare
JDDGAC_00520 -0.7 -2.1 Phage protein compare
JDDGAC_24735 rrrD -0.7 -0.8 lysozyme compare
JDDGAC_02120 rsxE -0.7 -2.0 electron transport complex subunit RsxE compare
JDDGAC_14280 cra -0.7 -1.9 catabolite repressor/activator compare
JDDGAC_11990 clpP -0.7 -1.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
JDDGAC_22980 fumE -0.7 -2.9 fumarase E compare
JDDGAC_12920 -0.7 -1.4 hypothetical protein compare
JDDGAC_04365 -0.7 -0.9 Putative phage tail component compare
JDDGAC_10870 miaB -0.7 -4.7 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_12130 yajD -0.7 -3.1 HNH nuclease YajD compare
JDDGAC_09300 -0.7 -1.1 Replication gene B protein compare
JDDGAC_21505 gltD -0.7 -5.2 glutamate synthase subunit GltD compare
JDDGAC_05695 gp41 -0.7 -2.0 Phage tail assembly chaperone proteins, E, or 41 or 14 compare
JDDGAC_03640 uxaB -0.7 -1.3 tagaturonate reductase compare
JDDGAC_05250 nleG -0.7 -1.0 T3SS effector E3 ubiquitin-protein ligase NleG compare
JDDGAC_06360 yciE -0.7 -1.2 Protein YciF compare
JDDGAC_09995 moaC -0.7 -1.8 cyclic pyranopterin monophosphate synthase MoaC compare
JDDGAC_25520 -0.7 -4.5 Ead/Ea22-like family protein compare
JDDGAC_18035 uvrD -0.7 -3.5 DNA helicase II compare
JDDGAC_04410 -0.7 -0.9 Tail completion protein Z compare
JDDGAC_01890 -0.7 -1.9 Uncharacterized ferredoxin-like protein YdhX compare
JDDGAC_18590 tnaC -0.7 -1.4 tryptophanase leader peptide compare
JDDGAC_09390 trxB -0.7 -0.9 thioredoxin-disulfide reductase compare
JDDGAC_06310 -0.7 -1.2 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_29990 yubD -0.7 -2.7 Putative methylase YubD compare
JDDGAC_26875 elaD -0.7 -0.8 ElaD/SseL family deubiquitinase compare
JDDGAC_00935 yebF -0.7 -0.7 Protein YebF compare
JDDGAC_06700 -0.7 -1.4 DUF4222 domain-containing protein compare
JDDGAC_09030 cmoM -0.7 -1.7 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
JDDGAC_10080 -0.7 -1.3 phage tail protein compare
JDDGAC_04405 -0.7 -1.1 phage tail protein compare
JDDGAC_09655 ybjH -0.7 -1.8 Uncharacterized protein YbjH compare
JDDGAC_07345 flgM -0.7 -0.7 anti-sigma-28 factor FlgM compare
JDDGAC_00920 kdgA -0.7 -1.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
JDDGAC_01260 yeaL -0.7 -1.2 UPF0756 membrane protein CKO_01811 compare
JDDGAC_03280 -0.7 -1.0 hypothetical protein compare
JDDGAC_00230 dsrB -0.7 -0.8 protein DsrB compare
JDDGAC_08180 efeB -0.6 -2.0 iron uptake transporter deferrochelatase/peroxidase subunit compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms