Experiment set2S216 for Escherichia coli ECRC98

Compare to:

WM_EV240

200 most important genes:

  gene name fitness t score description  
JDDGAC_19300 rfaJ -7.4 -4.0 glucosyltransferase compare
JDDGAC_26635 -6.8 -6.6 Protein DedA compare
JDDGAC_17890 rfaH -6.7 -2.5 transcription/translation regulatory transformer protein RfaH compare
JDDGAC_01860 lpp -6.6 -2.7 murein lipoprotein Lpp compare
JDDGAC_28575 perB -6.6 -3.1 GDP-perosamine N-acetyltransferase compare
JDDGAC_10750 pgm -6.2 -13.2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
JDDGAC_02140 rsxB -5.8 -1.9 electron transport complex subunit RsxB compare
JDDGAC_06295 minC -5.7 -1.9 septum site-determining protein MinC compare
JDDGAC_28540 rfbE -5.7 -1.9 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_21455 sspA -5.5 -6.9 stringent starvation protein A compare
JDDGAC_14270 rsmH -5.4 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
JDDGAC_06300 minD -5.0 -1.6 septum site-determining protein MinD compare
JDDGAC_18175 rffC -5.0 -6.4 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
JDDGAC_26945 arnD -5.0 -4.7 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase compare
JDDGAC_25875 purC -5.0 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_00675 flhD -4.9 -1.9 flagellar transcriptional regulator FlhD compare
JDDGAC_11060 crcB -4.9 -1.9 fluoride efflux transporter CrcB compare
JDDGAC_18400 mioC -4.9 -6.9 FMN-binding protein MioC compare
JDDGAC_11245 fepC -4.8 -3.8 ferrienterobactin ABC transporter ATPase compare
JDDGAC_02120 rsxE -4.8 -5.9 electron transport complex subunit RsxE compare
JDDGAC_25315 hscA -4.7 -0.9 Fe-S protein assembly chaperone HscA compare
JDDGAC_01040 prc -4.7 -8.1 carboxy terminal-processing peptidase compare
JDDGAC_23425 fliN -4.7 -0.9 YscQ/HrcQ family type III secretion apparatus protein compare
JDDGAC_22885 yggS -4.6 -4.9 pyridoxal phosphate homeostasis protein compare
JDDGAC_06305 minE -4.6 -0.9 cell division topological specificity factor MinE compare
JDDGAC_27165 apbE -4.6 -8.8 FAD:protein FMN transferase ApbE compare
JDDGAC_16800 pgi -4.6 -7.7 glucose-6-phosphate isomerase compare
JDDGAC_10815 nagA -4.5 -5.3 N-acetylglucosamine-6-phosphate deacetylase compare
JDDGAC_18170 rffA -4.4 -8.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
JDDGAC_25690 -4.3 -1.6 acyltransferase compare
JDDGAC_22340 bacA -4.3 -7.8 undecaprenyl-diphosphate phosphatase compare
JDDGAC_26570 prmB -4.3 -8.0 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
JDDGAC_19310 rfaL -4.2 -6.7 O-antigen ligase RfaL compare
JDDGAC_27845 -4.2 -1.1 holin compare
JDDGAC_24115 cysC -4.2 -10.7 Adenylyl-sulfate kinase compare
JDDGAC_21580 lptC -4.2 -1.5 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_22440 tolC -4.1 -17.1 outer membrane channel protein TolC compare
JDDGAC_18185 rffG -4.1 -11.1 dTDP-glucose 4,6-dehydratase compare
JDDGAC_28515 galF -4.0 -6.0 UTP--glucose-1-phosphate uridylyltransferase GalF compare
JDDGAC_10165 -4.0 -1.5 DNA breaking-rejoining protein compare
JDDGAC_11225 fepB -3.8 -5.7 ferrienterobactin ABC transporter periplasmic binding protein compare
JDDGAC_10370 galT -3.8 -7.4 galactose-1-phosphate uridylyltransferase compare
JDDGAC_05535 -3.8 -1.0 hypothetical protein compare
JDDGAC_28560 wbdQ -3.8 -1.2 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
JDDGAC_25525 -3.8 -0.9 hypothetical protein compare
JDDGAC_24045 cysH -3.8 -8.9 phosphoadenosine phosphosulfate reductase compare
JDDGAC_28510 -3.7 -11.2 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_24800 rnfH -3.7 -3.8 RnfH family protein compare
JDDGAC_15870 purA -3.7 -1.8 adenylosuccinate synthase compare
JDDGAC_11920 glnK -3.7 -1.5 P-II family nitrogen regulator compare
JDDGAC_14280 cra -3.7 -3.9 catabolite repressor/activator compare
JDDGAC_28520 wcaA -3.6 -1.3 glycosyl transferase compare
JDDGAC_05500 -3.6 -1.9 hypothetical protein compare
JDDGAC_18180 rfbA -3.6 -4.2 glucose-1-phosphate thymidylyltransferase RfbA compare
JDDGAC_25435 guaB -3.6 -6.5 IMP dehydrogenase compare
JDDGAC_26935 arnE -3.6 -3.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
JDDGAC_01035 proQ -3.6 -3.4 RNA chaperone ProQ compare
JDDGAC_02130 rsxD -3.5 -6.4 electron transport complex subunit RsxD compare
JDDGAC_06620 mnmA -3.5 -1.6 tRNA 2-thiouridine(34) synthase MnmA compare
JDDGAC_02145 rsxA -3.5 -0.9 electron transport complex subunit RsxA compare
JDDGAC_25045 rseA -3.5 -4.6 anti-sigma-E factor RseA compare
JDDGAC_25135 purL -3.5 -19.6 phosphoribosylformylglycinamidine synthase compare
JDDGAC_21670 greA -3.4 -2.6 transcription elongation factor GreA compare
JDDGAC_15900 miaA -3.4 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_17355 ftsN -3.4 -4.8 cell division protein FtsN compare
JDDGAC_18160 rffT -3.4 -6.5 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
JDDGAC_15585 fbp -3.3 -8.7 class 1 fructose-bisphosphatase compare
JDDGAC_01220 yoaG -3.3 -1.3 Protein YoaG compare
JDDGAC_25745 ppk1 -3.2 -9.0 polyphosphate kinase 1 compare
JDDGAC_21770 nlpI -3.2 -8.8 lipoprotein NlpI compare
JDDGAC_16610 -3.2 -3.1 phage tail protein compare
JDDGAC_11265 fes -3.1 -3.4 enterobactin/ferric enterobactin esterase compare
JDDGAC_00480 cysE -3.1 -1.8 serine acetyltransferase compare
JDDGAC_16935 purH -3.1 -14.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_26930 arnF -3.1 -3.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
JDDGAC_11240 fepG -3.1 -2.8 iron-enterobactin ABC transporter permease compare
JDDGAC_02135 rsxC -3.1 -5.5 electron transport complex subunit RsxC compare
JDDGAC_29030 -3.0 -1.6 Putative prophage portal protein compare
JDDGAC_25755 purM -3.0 -8.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_28885 ninG -3.0 -2.1 Protein ninG compare
JDDGAC_19330 yibB -3.0 -8.0 protein YibB compare
JDDGAC_25060 rseC -3.0 -8.1 SoxR-reducing system protein RseC compare
JDDGAC_22605 exbD -3.0 -4.6 TonB system transport protein ExbD compare
JDDGAC_24040 cysI -3.0 -7.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_21600 mlaF -3.0 -10.9 phospholipid ABC transporter ATP-binding protein MlaF conserved
JDDGAC_11490 purK -2.9 -7.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_01425 nudG -2.9 -2.1 CTP pyrophosphohydrolase compare
JDDGAC_11595 ylbG -2.9 -2.2 Uncharacterized protein YlbG compare
JDDGAC_07130 mfd -2.9 -7.4 transcription-repair coupling factor compare
JDDGAC_25440 guaA -2.9 -1.4 glutamine-hydrolyzing GMP synthase compare
JDDGAC_22600 exbB -2.9 -6.4 tol-pal system-associated acyl-CoA thioesterase compare
JDDGAC_24035 cysJ -2.9 -10.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_11485 purE -2.8 -2.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_11235 fepD -2.8 -2.0 ferrienterobactin ABC transporter permease compare
JDDGAC_16940 purD -2.8 -7.7 Phosphoribosylamine--glycine ligase compare
JDDGAC_21605 mlaE -2.8 -7.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
JDDGAC_18205 wecA -2.7 -12.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_07785 tnpB -2.7 -1.2 IS66 family insertion sequence element accessory protein TnpB compare
JDDGAC_09920 espX2 -2.7 -1.2 type III secretion system effector EspX2 compare
JDDGAC_07480 -2.6 -1.2 Uncharacterized protein YmdA compare
JDDGAC_00265 fliM -2.6 -2.6 flagellar motor switch protein FliM compare
JDDGAC_21615 mlaC -2.5 -8.1 phospholipid-binding protein MlaC compare
JDDGAC_21585 kdsC -2.5 -1.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
JDDGAC_21460 sspB -2.5 -5.2 ClpXP protease specificity-enhancing factor compare
JDDGAC_06120 prmC -2.5 -1.1 peptide chain release factor N(5)-glutamine methyltransferase compare
JDDGAC_01165 yeaY -2.5 -2.1 Slp family lipoprotein YeaY compare
JDDGAC_26675 purF -2.5 -7.8 amidophosphoribosyltransferase compare
JDDGAC_18510 pstA -2.5 -3.4 phosphate ABC transporter permease PstA compare
JDDGAC_20810 cysG -2.5 -7.1 siroheme synthase CysG compare
JDDGAC_21610 mlaD -2.5 -9.3 outer membrane lipid asymmetry maintenance protein MlaD compare
JDDGAC_28525 wzy -2.4 -1.9 O157 family O-antigen polymerase compare
JDDGAC_20620 -2.4 -5.6 NfuA family Fe-S biogenesis protein compare
JDDGAC_29980 sopA -2.4 -0.9 plasmid-partitioning protein SopA compare
JDDGAC_28450 wcaF -2.4 -2.4 colanic acid biosynthesis acetyltransferase WcaF compare
JDDGAC_26555 fimA -2.4 -4.7 fimbrial protein compare
JDDGAC_09600 ybjN -2.4 -2.4 Uncharacterized protein YbjN compare
JDDGAC_14890 holD -2.4 -0.6 DNA polymerase III subunit psi compare
JDDGAC_29425 -2.4 -0.9 Prophage protein compare
JDDGAC_18500 pstS -2.3 -5.7 phosphate ABC transporter substrate-binding protein PstS compare
JDDGAC_03590 marR -2.3 -3.3 multiple antibiotic resistance transcriptional regulator MarR compare
JDDGAC_06230 fadR -2.3 -2.0 fatty acid metabolism transcriptional regulator FadR compare
JDDGAC_01260 yeaL -2.3 -1.9 UPF0756 membrane protein CKO_01811 compare
JDDGAC_20510 yhgO -2.2 -1.8 Protein YhgO compare
JDDGAC_13205 -2.2 -1.4 DUF968 domain-containing protein compare
JDDGAC_11270 fepA -2.2 -10.8 ferrienterobactin outer membrane transporter compare
JDDGAC_11975 -2.2 -3.5 Lon protease compare
JDDGAC_30195 repA -2.2 -1.0 incFII family plasmid replication initiator RepA compare
JDDGAC_09510 -2.2 -2.6 hypothetical protein compare
JDDGAC_16385 ytcA -2.2 -0.8 Uncharacterized protein YtcA compare
JDDGAC_23565 -2.2 -0.7 hypothetical protein compare
JDDGAC_28120 apbC -2.2 -4.9 iron-sulfur cluster carrier protein ApbC compare
JDDGAC_00770 cutC -2.2 -1.7 copper homeostasis protein CutC compare
JDDGAC_01730 ydiT -2.2 -1.6 Ferredoxin-like protein YdiT compare
JDDGAC_25155 qseG -2.1 -5.7 two-component system QseEF-associated lipoprotein QseG compare
JDDGAC_05870 -2.1 -2.7 exonuclease compare
JDDGAC_26500 -2.1 -1.4 Uncharacterized protein YfdF compare
JDDGAC_22455 cpdA -2.1 -5.5 3',5'-cyclic-AMP phosphodiesterase compare
JDDGAC_20740 aroK -2.1 -1.9 shikimate kinase AroK compare
JDDGAC_25750 purN -2.1 -6.2 phosphoribosylglycinamide formyltransferase compare
JDDGAC_09215 lysB -2.1 -2.6 Rz-like lysis system protein LysB compare
JDDGAC_17795 dsbA -2.1 -3.7 thiol:disulfide interchange protein DsbA compare
JDDGAC_05245 espM1 -2.1 -1.2 T3SS effector guanine nucleotide exchange factor EspM1 compare
JDDGAC_11365 -2.1 -1.8 Uncharacterized conserved protein compare
JDDGAC_27880 -2.1 -1.2 Phage protein compare
JDDGAC_08380 appA -2.0 -3.1 bifunctional acid phosphatase/4-phytase compare
JDDGAC_09835 rhtA -2.0 -2.2 threonine/homoserine exporter RhtA compare
JDDGAC_13920 mrcB -2.0 -8.1 bifunctional glycosyl transferase/transpeptidase conserved
JDDGAC_05900 tonB -2.0 -3.2 TonB system transport protein TonB compare
JDDGAC_27785 rusA -2.0 -0.7 crossover junction endodeoxyribonuclease RusA compare
JDDGAC_15540 treC -2.0 -3.8 alpha,alpha-phosphotrehalase compare
JDDGAC_14615 -2.0 -1.9 fimbrial family protein compare
JDDGAC_00350 fliT -2.0 -1.7 flagella biosynthesis regulatory protein FliT compare
JDDGAC_21730 nusA -1.9 -2.4 Transcription termination/antitermination protein NusA compare
JDDGAC_26495 mlaA -1.9 -5.0 phospholipid-binding lipoprotein MlaA compare
JDDGAC_09800 ldtB -1.9 -5.7 L,D-transpeptidase compare
JDDGAC_06310 -1.9 -1.2 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_20210 -1.9 -2.3 DUF3261 domain-containing protein compare
JDDGAC_18785 -1.9 -0.7 hypothetical protein compare
JDDGAC_15525 mgtL -1.8 -1.0 mgtA leader peptide compare
JDDGAC_13040 -1.8 -6.6 GIY-YIG domain-containing protein conserved
JDDGAC_00520 -1.8 -2.3 Phage protein compare
JDDGAC_10820 nagC -1.8 -3.7 DNA-binding transcriptional regulator NagC compare
JDDGAC_17735 glnG -1.8 -1.4 nitrogen regulation protein NR(I) compare
JDDGAC_04170 ydcA -1.8 -1.6 Uncharacterized protein YdcA compare
JDDGAC_10205 -1.8 -1.2 Putative bacteriophage protein (Gene 65) compare
JDDGAC_20930 yheO -1.8 -1.6 Uncharacterized protein YheO compare
JDDGAC_01815 ydiH -1.8 -1.0 Uncharacterized protein YdiH compare
JDDGAC_23140 ygfB -1.8 -1.3 UPF0149 family protein YgfB compare
JDDGAC_18085 hemX -1.8 -4.4 uroporphyrinogen-III C-methyltransferase compare
JDDGAC_21310 dusB -1.8 -4.7 tRNA dihydrouridine synthase DusB compare
JDDGAC_15515 ridA -1.8 -3.0 2-iminobutanoate/2-iminopropanoate deaminase compare
JDDGAC_06565 ybcN -1.8 -0.8 Uncharacterized protein YbcN compare
JDDGAC_28180 thiM -1.8 -1.6 hydroxyethylthiazole kinase compare
JDDGAC_26940 arnT -1.7 -7.0 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
JDDGAC_29035 -1.7 -0.8 head-tail connector protein compare
JDDGAC_25160 qseF -1.7 -7.0 two-component system response regulator QseF/GlrR compare
JDDGAC_15675 cysQ -1.7 -5.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_00270 fliL -1.7 -2.3 flagellar basal body-associated protein FliL compare
JDDGAC_01395 ydjA -1.7 -1.4 NAD(P)H nitroreductase compare
JDDGAC_06890 -1.7 -0.6 HNH endonuclease compare
JDDGAC_25535 -1.7 -1.3 hypothetical protein compare
JDDGAC_29155 yeeX -1.7 -2.4 DUF496 domain-containing protein compare
JDDGAC_19355 envC -1.7 -4.0 murein hydrolase activator EnvC compare
JDDGAC_08805 yccU -1.7 -1.4 Uncharacterized protein YccU compare
JDDGAC_06755 -1.7 -0.9 hypothetical protein compare
JDDGAC_06515 -1.6 -1.0 DUF1398 domain-containing protein compare
JDDGAC_10355 acrZ -1.6 -0.8 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_03805 ddpX -1.6 -1.7 D-alanyl-D-alanine dipeptidase compare
JDDGAC_20015 arsR -1.6 -1.2 As(III)-sensing metalloregulatory transcriptional repressor ArsR compare
JDDGAC_05105 lapA -1.6 -1.1 lipopolysaccharide assembly protein LapA compare
JDDGAC_19185 rpoZ -1.6 -0.6 DNA-directed RNA polymerase subunit omega compare
JDDGAC_22880 yggT -1.6 -0.8 osmotic shock tolerance protein YggT compare
JDDGAC_29975 sopA -1.6 -3.0 plasmid-partitioning protein SopA compare
JDDGAC_11965 ppiD -1.6 -4.8 peptidylprolyl isomerase compare
JDDGAC_05985 galU -1.6 -1.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_07825 -1.6 -0.6 Membrane protein compare
JDDGAC_03900 espR1 -1.6 -1.4 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_27665 -1.6 -1.9 DUF551 domain-containing protein compare
JDDGAC_10870 miaB -1.6 -6.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
JDDGAC_03630 yneG -1.6 -1.0 Uncharacterized protein YneG compare


Specific Phenotypes

For 30 genes in this experiment

For phage Phage in Escherichia coli ECRC98

For phage Phage across organisms