Experiment set2S215 for Escherichia coli ECRC98

WM_EV240

Group: phage
Media: Whole milk + Phage (10 MOI), pH=6.78
Culturing: Ecoli_ECRC98_ML1, 48 well microplate, Aerobic, at 25 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/18/2024

Specific Phenotypes

For 28 genes in this experiment

For phage Phage in Escherichia coli ECRC98

For phage Phage across organisms

SEED Subsystems

Subsystem	#Specific
Glycerolipid and Glycerophospholipid Metabolism in Bacteria	2
Orphan regulatory proteins	2
Deoxyribose and Deoxynucleoside Catabolism	1
Glycerol and Glycerol-3-phosphate Uptake and Utilization	1
Lipid A modifications	1
MLST	1
Peptidoglycan Biosynthesis	1
Ton and Tol transport systems	1
Type IV pilus	1
cAMP signaling in bacteria	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Puromycin biosynthesis
• Peptidoglycan biosynthesis
• Glycerolipid metabolism
• Purine metabolism
• Methionine metabolism
• Lysine degradation
• Tryptophan metabolism
• Nucleotide sugars metabolism
• Lipopolysaccharide biosynthesis
• Glycerophospholipid metabolism
• alpha-Linolenic acid metabolism
• Trinitrotoluene degradation
• Biotin metabolism
• Porphyrin and chlorophyll metabolism
• Carotenoid biosynthesis - General
• Alkaloid biosynthesis I
• Insect hormone biosynthesis
• Biosynthesis of siderophore group nonribosomal peptides

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
glycerol degradation I	3	3	1
oleate biosynthesis III (cyanobacteria)	3	2	1
glycerol and glycerophosphodiester degradation	4	4	1
CDP-diacylglycerol biosynthesis I	4	4	1
CDP-diacylglycerol biosynthesis II	4	4	1
peptidoglycan maturation (meso-diaminopimelate containing)	12	6	3
phosphatidate biosynthesis (yeast)	5	3	1
superpathway of phospholipid biosynthesis III (E. coli)	12	12	2
thiazole component of thiamine diphosphate biosynthesis I	6	6	1
phosphatidylglycerol biosynthesis I	6	6	1
phosphatidylglycerol biosynthesis II	6	6	1
polymyxin resistance	6	5	1
palmitoyl ethanolamide biosynthesis	6	2	1
superpathway of stearidonate biosynthesis (cyanobacteria)	6	2	1
diacylglycerol and triacylglycerol biosynthesis	7	3	1
stigma estolide biosynthesis	7	2	1
anandamide biosynthesis II	8	2	1
peptidoglycan biosynthesis II (staphylococci)	17	12	2
peptidoglycan biosynthesis IV (Enterococcus faecium)	17	12	2
peptidoglycan biosynthesis V (β-lactam resistance)	17	11	2
superpathway of thiamine diphosphate biosynthesis I	10	10	1
peptidoglycan recycling II	10	7	1
peptidoglycan biosynthesis I (meso-diaminopimelate containing)	12	12	1
anandamide biosynthesis I	12	4	1
superpathway of cardiolipin biosynthesis (bacteria)	13	11	1
peptidoglycan recycling I	14	14	1
superpathway of phospholipid biosynthesis II (plants)	28	10	2
peptidoglycan biosynthesis III (mycobacteria)	15	11	1