Experiment set2S214 for Escherichia coli ECRC98

Compare to:

WM_TP12

200 most detrimental genes:

  gene name fitness t score description  
JDDGAC_25500 +2.6 7.1 hypothetical protein compare
JDDGAC_09165 +2.2 12.1 phage tail protein compare
JDDGAC_09320 +2.2 13.5 integrase compare
JDDGAC_09190 +2.1 16.9 Baseplate protein W compare
JDDGAC_09130 +2.1 13.4 putative baseplate hub protein compare
JDDGAC_09215 lysB +2.1 13.7 Rz-like lysis system protein LysB compare
JDDGAC_09145 +2.0 8.8 Phage tail assembly chaperone proteins, E, or 41 or 14 compare
JDDGAC_09185 +2.0 14.8 Baseplate protein J compare
JDDGAC_09170 +2.0 4.8 tail fiber assembly protein compare
JDDGAC_09195 +2.0 3.0 Spike protein compare
JDDGAC_09180 +2.0 13.5 phage tail protein I compare
JDDGAC_09155 +1.9 7.0 phage tail protein compare
JDDGAC_21970 agaR +1.9 8.7 aga operon transcriptional regulator AgaR compare
JDDGAC_09135 +1.9 12.3 phage tail protein compare
JDDGAC_09240 +1.8 4.8 Head completion/stabilization protein compare
JDDGAC_09245 +1.8 8.8 Terminase, endonuclease subunit compare
JDDGAC_09175 +1.8 8.6 Phage tail collar protein compare
JDDGAC_09265 +1.8 9.0 phage portal protein compare
JDDGAC_09220 lysA +1.7 8.1 Putative antiholin compare
JDDGAC_09160 spoIVCA +1.7 7.1 DNA-invertase compare
JDDGAC_09270 +1.7 5.7 hypothetical protein compare
JDDGAC_09140 +1.7 12.2 putative tape measure protein compare
JDDGAC_09260 +1.7 11.9 oxidoreductase compare
JDDGAC_09225 +1.6 6.7 Endolysin compare
JDDGAC_09290 oRF81 +1.6 2.1 Uncharacterized protein in GpA 5'region compare
JDDGAC_09150 +1.4 7.3 Tail tube protein compare
JDDGAC_09125 ogrK +1.4 6.4 prophage transcriptional regulator OgrK compare
JDDGAC_18760 tisB +1.4 1.8 Small toxic protein TisB compare
JDDGAC_09205 +1.4 4.7 Tail completion protein R compare
JDDGAC_09250 +1.4 7.9 phage major capsid protein, P2 family compare
JDDGAC_10210 +1.4 2.6 lysis protein compare
JDDGAC_09255 +1.3 8.2 Capsid assembly scaffolding protein compare
JDDGAC_24200 ygbA +1.3 3.2 nitrous oxide-stimulated promoter family protein compare
JDDGAC_09210 lysC +1.2 3.8 Rz1-like lysis system protein LysC compare
JDDGAC_01205 dmlR +1.2 2.4 DNA-binding transcriptional regulator DmlR compare
JDDGAC_06905 +1.2 2.1 hypothetical protein compare
JDDGAC_27270 dsbE +1.1 1.9 thiol:disulfide interchange protein DsbE compare
JDDGAC_01295 yeaE +1.1 2.6 methylglyoxal reductase YeaE compare
JDDGAC_03800 dosP +1.1 1.2 oxygen-sensing cyclic-di-GMP phosphodiesterase compare
JDDGAC_12935 +1.1 3.2 hypothetical protein compare
JDDGAC_10690 yafF +1.1 1.8 ISAs1 family transposase compare
JDDGAC_05075 yciZ +1.1 1.3 UPF0509 protein YciZ compare
JDDGAC_09990 moaD +1.1 1.5 molybdopterin synthase sulfur carrier subunit compare
JDDGAC_25525 +1.0 2.3 hypothetical protein compare
JDDGAC_13340 yafP +1.0 1.5 GNAT family N-acetyltransferase compare
JDDGAC_27170 ada +1.0 3.1 bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada compare
JDDGAC_25610 +1.0 3.4 hypothetical protein compare
JDDGAC_25615 +1.0 4.7 hypothetical protein compare
JDDGAC_20125 ptsH +1.0 2.6 HPr family phosphocarrier protein compare
JDDGAC_05105 lapA +1.0 1.7 lipopolysaccharide assembly protein LapA compare
JDDGAC_20840 +0.9 2.0 Uncharacterized protein YhfG compare
JDDGAC_27845 +0.9 1.7 holin compare
JDDGAC_29175 yeeT +0.9 1.7 Uncharacterized protein YeeT compare
JDDGAC_04985 puuD +0.9 2.4 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
JDDGAC_27045 +0.9 0.9 hypothetical protein compare
JDDGAC_03615 yneJ +0.9 1.5 Uncharacterized HTH-type transcriptional regulator YneJ compare
JDDGAC_27705 +0.9 2.1 cruciferin compare
JDDGAC_24790 smpB +0.9 2.2 SsrA-binding protein SmpB compare
JDDGAC_05895 yciA +0.9 2.5 acyl-CoA thioester hydrolase YciA compare
JDDGAC_12240 ppnP +0.8 1.6 pyrimidine/purine nucleoside phosphorylase compare
JDDGAC_01505 spy +0.8 1.6 ATP-independent periplasmic protein-refolding chaperone Spy compare
JDDGAC_05530 +0.8 1.1 hypothetical protein compare
JDDGAC_23545 +0.8 1.2 Uncharacterized protein YqeK compare
JDDGAC_01755 ydiP +0.8 1.5 Uncharacterized HTH-type transcriptional regulator YdiP compare
JDDGAC_03645 tam +0.8 1.7 trans-aconitate 2-methyltransferase compare
JDDGAC_07570 +0.8 1.9 Phage-related protein compare
JDDGAC_09815 mntS +0.8 0.8 manganase accumulation protein MntS compare
JDDGAC_15080 +0.8 2.2 Putative Se/S carrier protein-like compare
JDDGAC_21490 nanK +0.8 1.4 N-acetylmannosamine kinase compare
JDDGAC_03190 +0.8 1.5 DUF977 domain-containing protein compare
JDDGAC_06310 +0.8 0.9 autotransporter outer membrane beta-barrel domain-containing protein compare
JDDGAC_11280 hokE +0.8 1.6 type I toxin-antitoxin system toxin HokE compare
JDDGAC_25605 +0.8 3.9 Bbp17 compare
JDDGAC_28445 wcaE +0.8 1.3 colanic acid biosynthesis glycosyltransferase WcaE compare
JDDGAC_03815 ddpB +0.8 3.2 putative D,D-dipeptide transport system permease protein DdpB compare
JDDGAC_15130 iraD +0.8 1.7 anti-adapter protein IraD compare
JDDGAC_05550 +0.8 1.1 Uncharacterized protein gp11 compare
JDDGAC_05245 espM1 +0.8 1.4 T3SS effector guanine nucleotide exchange factor EspM1 compare
JDDGAC_26500 +0.7 1.7 Uncharacterized protein YfdF compare
JDDGAC_22670 hypA +0.7 2.6 hydrogenase maturation nickel metallochaperone HypA compare
JDDGAC_06555 ybcO +0.7 0.8 Putative nuclease YbcO compare
JDDGAC_03315 +0.7 1.2 hypothetical protein compare
JDDGAC_24970 yfiM +0.7 1.5 YfiM family lipoprotein compare
JDDGAC_25590 +0.7 4.0 Head to tail connecting protein compare
JDDGAC_28785 +0.7 1.7 hypothetical protein compare
JDDGAC_03310 +0.7 1.5 hypothetical protein compare
JDDGAC_13015 +0.7 1.4 Phage-associated protein compare
JDDGAC_28670 yeeD +0.7 1.2 Putative sulfur carrier protein YeeD compare
JDDGAC_29940 +0.7 1.5 Plasmid replication region DNA-binding N-term compare
JDDGAC_24900 raiA +0.7 2.6 ribosome-associated translation inhibitor RaiA compare
JDDGAC_15730 tnpA +0.7 1.5 IS200/IS605-like element IS609 family transposase compare
JDDGAC_01095 manZ +0.7 2.6 PTS mannose transporter subunit IID compare
JDDGAC_10070 nleB2 +0.7 0.9 type III secretion system effector arginine glycosyltransferase NleB2 compare
JDDGAC_25485 +0.7 1.3 hypothetical protein compare
JDDGAC_24735 rrrD +0.7 0.9 lysozyme compare
JDDGAC_25620 +0.7 4.4 hypothetical protein compare
JDDGAC_06305 minE +0.7 0.8 cell division topological specificity factor MinE compare
JDDGAC_04110 tehB +0.7 2.4 tellurite resistance methyltransferase TehB compare
JDDGAC_23435 +0.7 1.2 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
JDDGAC_25635 +0.7 2.2 Acetyltransferase compare
JDDGAC_05625 +0.7 1.7 Bacteriophage Mu, Gp27 compare
JDDGAC_11920 glnK +0.7 1.1 P-II family nitrogen regulator compare
JDDGAC_25460 +0.7 2.8 transcriptional regulator compare
JDDGAC_05915 clsA +0.7 2.2 cardiolipin synthase ClsA compare
JDDGAC_03170 +0.7 1.5 Putative bacterial toxin ydaT compare
JDDGAC_10565 sucD +0.7 2.0 succinate--CoA ligase subunit alpha compare
JDDGAC_03505 ydfJ +0.7 1.5 Putative transporter YdfJ compare
JDDGAC_01300 yeaD +0.7 2.7 Putative glucose-6-phosphate 1-epimerase compare
JDDGAC_13120 +0.7 1.1 DUF2635 domain-containing protein compare
JDDGAC_11145 uspG +0.7 2.1 universal stress protein UspG compare
JDDGAC_05065 rnb +0.7 1.7 exoribonuclease II compare
JDDGAC_10960 ybeQ +0.7 1.2 Sel1-repeat-containing protein YbeQ compare
JDDGAC_20785 frlD +0.7 2.2 fructoselysine 6-kinase compare
JDDGAC_10080 +0.7 1.1 phage tail protein compare
JDDGAC_01440 ynjD +0.7 0.8 Uncharacterized ABC transporter ATP-binding protein YnjD compare
JDDGAC_11000 rsfS +0.7 1.1 ribosome silencing factor compare
JDDGAC_27050 lysR +0.7 2.3 transcriptional regulator compare
JDDGAC_13985 fimA +0.7 2.8 fimbrial-like protein compare
JDDGAC_12325 iprA +0.7 1.7 hydrogen peroxide resistance inhibitor IprA compare
JDDGAC_23070 meaB +0.7 1.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
JDDGAC_13250 +0.6 0.7 XRE family transcriptional regulator compare
JDDGAC_28430 wcaB +0.6 1.7 colanic acid biosynthesis acetyltransferase WcaB compare
JDDGAC_04225 azoR +0.6 1.2 FMN-dependent NADH-azoreductase compare
JDDGAC_06425 +0.6 0.6 phage minor tail protein L compare
JDDGAC_07385 yceB +0.6 1.7 lipoprotein compare
JDDGAC_23430 escR +0.6 1.0 EscR/YscR/HrcR family type III secretion system export apparatus protein compare
JDDGAC_10820 nagC +0.6 3.0 DNA-binding transcriptional regulator NagC compare
JDDGAC_10240 +0.6 2.8 antitermination protein compare
JDDGAC_24995 trxC +0.6 1.0 thioredoxin TrxC compare
JDDGAC_26835 nuoH +0.6 1.2 NADH-quinone oxidoreductase subunit NuoH compare
JDDGAC_06365 yciE +0.6 1.0 Protein YciE compare
JDDGAC_01200 dmlA +0.6 1.7 multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase compare
JDDGAC_03530 dcp +0.6 2.2 peptidyl-dipeptidase Dcp compare
JDDGAC_08080 fhaC +0.6 1.6 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
JDDGAC_28825 +0.6 1.6 hypothetical protein compare
JDDGAC_01235 dgcP +0.6 1.9 diguanylate cyclase DgcP compare
JDDGAC_07040 +0.6 1.1 replication protein compare
JDDGAC_09840 dps +0.6 2.5 DNA starvation/stationary phase protection protein Dps compare
JDDGAC_12495 cynR +0.6 1.2 transcriptional regulator CynR compare
JDDGAC_01500 astE +0.6 1.9 succinylglutamate desuccinylase compare
JDDGAC_15075 yjiL +0.6 0.7 Uncharacterized protein YjiL compare
JDDGAC_07060 +0.6 1.7 Prophage repressor RacR compare
JDDGAC_19365 yibN +0.6 2.4 Uncharacterized protein YibN compare
JDDGAC_03680 lsrR +0.6 1.3 transcriptional regulator LsrR compare
JDDGAC_28980 +0.6 1.3 HNH endonuclease compare
JDDGAC_13420 +0.6 1.5 ISAs1-like element ISEc26 family transposase compare
JDDGAC_04560 +0.6 2.8 DUF1133 domain-containing protein compare
JDDGAC_02205 uidA +0.6 1.7 beta-glucuronidase compare
JDDGAC_06825 +0.6 0.9 phage tail tape measure protein compare
JDDGAC_01570 cedA +0.6 1.6 cell division activator CedA compare
JDDGAC_26705 hisP +0.6 2.7 histidine ABC transporter ATP-binding protein HisP compare
JDDGAC_01495 astB +0.6 1.9 N-succinylarginine dihydrolase compare
JDDGAC_25595 +0.6 2.7 Phage protein compare
JDDGAC_10320 ybhH +0.6 1.8 4-oxalomesaconate tautomerase compare
JDDGAC_14365 yabI +0.6 1.9 Inner membrane protein YabI compare
JDDGAC_07220 pabC +0.6 1.9 aminodeoxychorismate lyase compare
JDDGAC_18060 yifL +0.6 2.1 Uncharacterized lipoprotein YifL compare
JDDGAC_07530 ycdY +0.6 1.4 molecular chaperone YcdY compare
JDDGAC_28930 iraM +0.6 1.5 Anti-adapter protein IraM compare
JDDGAC_13550 +0.6 2.1 Uncharacterized lipoprotein YafT compare
JDDGAC_13105 +0.6 1.6 Phage Mu small tail protein compare
JDDGAC_10450 cpoB +0.6 1.7 cell division protein CpoB compare
JDDGAC_09920 espX2 +0.6 0.6 type III secretion system effector EspX2 compare
JDDGAC_27145 rcsB +0.6 2.8 transcriptional regulator RcsB compare
JDDGAC_26725 folX +0.6 1.6 dihydroneopterin triphosphate 2'-epimerase compare
JDDGAC_29170 cbtA +0.6 1.6 type IV toxin-antitoxin system toxin CbtA compare
JDDGAC_18925 escT +0.6 1.4 type III secretion system LEE export apparatus protein EscT compare
JDDGAC_16625 +0.6 0.8 phage tail protein compare
JDDGAC_04565 +0.6 0.7 DUF1364 domain-containing protein compare
JDDGAC_09900 ybiE +0.6 1.2 Protein YbiE compare
JDDGAC_10885 corC +0.6 1.3 CNNM family magnesium/cobalt transport protein CorC compare
JDDGAC_11050 tatE +0.5 1.3 deaminated glutathione amidase compare
JDDGAC_03900 espR1 +0.5 1.4 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_08560 nu1 +0.5 1.5 Prophage Qin DNA packaging protein NU1-like protein compare
JDDGAC_26070 yfeX +0.5 1.3 porphyrinogen peroxidase compare
JDDGAC_15395 +0.5 0.5 XRE family transcriptional regulator compare
JDDGAC_06360 yciE +0.5 1.1 Protein YciF compare
JDDGAC_08445 lomR +0.5 0.5 Ail/Lom family protein compare
JDDGAC_03535 ydeJ +0.5 1.6 2-oxo-tetronate isomerase compare
JDDGAC_11035 lipB +0.5 0.7 lipoyl(octanoyl) transferase LipB compare
JDDGAC_11805 recR +0.5 2.0 recombination mediator RecR compare
JDDGAC_23180 yqfB +0.5 1.6 N(4)-acetylcytidine aminohydrolase compare
JDDGAC_04005 yncE +0.5 1.6 Uncharacterized protein YncE compare
JDDGAC_06045 +0.5 1.1 hypothetical protein compare
JDDGAC_08000 fimB +0.5 3.1 integrase compare
JDDGAC_16590 +0.5 1.0 DinI-like protein Z3916/ECs3483 compare
JDDGAC_04365 +0.5 0.7 Putative phage tail component compare
JDDGAC_24775 espM2 +0.5 1.6 T3SS effector guanine nucleotide exchange factor EspM2 compare
JDDGAC_08195 +0.5 1.2 hypothetical protein compare
JDDGAC_06140 ispE +0.5 0.9 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_28700 +0.5 0.8 DUF551 domain-containing protein compare
JDDGAC_28910 Arg_trna +0.5 1.5 tRNA-Arg(tct) compare
JDDGAC_01475 xthA +0.5 2.1 exodeoxyribonuclease III compare
JDDGAC_22825 yggX +0.5 2.3 oxidative damage protection protein compare
JDDGAC_21540 yrbL +0.5 1.9 PhoP regulatory network protein YrbL compare
JDDGAC_13185 +0.5 1.0 phage holin, lambda family compare
JDDGAC_06605 icd +0.5 1.7 NADP-dependent isocitrate dehydrogenase compare
JDDGAC_03200 +0.5 1.2 hypothetical protein compare
JDDGAC_27770 ybcN +0.5 1.8 DNA base-flipping protein YbcN compare
JDDGAC_11650 ybbJ +0.5 1.8 Inner membrane protein YbbJ compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms