Experiment set2S211 for Escherichia coli ECRC98

Compare to:

WM_Bas31

200 most important genes:

  gene name fitness t score description  
JDDGAC_28540 rfbE -6.5 -3.0 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_27740 -6.2 -1.7 regulator compare
JDDGAC_25435 guaB -5.8 -4.0 IMP dehydrogenase compare
JDDGAC_19280 rfaG -5.8 -5.6 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_21580 lptC -4.9 -1.6 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_25875 purC -4.8 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_26675 purF -4.8 -12.6 amidophosphoribosyltransferase compare
JDDGAC_15870 purA -4.4 -3.0 adenylosuccinate synthase compare
JDDGAC_15675 cysQ -4.4 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_24045 cysH -4.1 -10.0 phosphoadenosine phosphosulfate reductase compare
JDDGAC_23100 serA -4.1 -9.3 phosphoglycerate dehydrogenase compare
JDDGAC_16935 purH -4.0 -13.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_19320 rfaF -3.9 -2.6 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_22885 yggS -3.9 -6.9 pyridoxal phosphate homeostasis protein compare
JDDGAC_14795 serB -3.9 -5.5 phosphoserine phosphatase compare
JDDGAC_09100 serC -3.9 -10.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_13000 -3.9 -2.5 AAA family ATPase compare
JDDGAC_02140 rsxB -3.9 -3.0 electron transport complex subunit RsxB compare
JDDGAC_06700 -3.7 -2.4 DUF4222 domain-containing protein compare
JDDGAC_25755 purM -3.7 -10.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_11485 purE -3.7 -4.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_14440 apaH -3.6 -2.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_25135 purL -3.6 -15.4 phosphoribosylformylglycinamidine synthase compare
JDDGAC_11470 cysS -3.6 -1.4 cysteine--tRNA ligase compare
JDDGAC_25440 guaA -3.5 -2.4 glutamine-hydrolyzing GMP synthase compare
JDDGAC_16940 purD -3.3 -7.8 Phosphoribosylamine--glycine ligase compare
JDDGAC_15900 miaA -3.3 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_10355 acrZ -3.3 -1.5 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_14420 surA -3.2 -4.7 peptidylprolyl isomerase SurA compare
JDDGAC_28510 -3.1 -8.8 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_01225 yeaQ -3.1 -1.6 UPF0410 protein YeaQ compare
JDDGAC_11975 -3.0 -4.9 Lon protease compare
JDDGAC_11490 purK -3.0 -7.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_13940 dksA -2.9 -7.3 RNA polymerase-binding protein DksA compare
JDDGAC_28520 wcaA -2.9 -1.8 glycosyl transferase compare
JDDGAC_17735 glnG -2.9 -2.3 nitrogen regulation protein NR(I) compare
JDDGAC_10475 tolQ -2.9 -3.0 Tol-Pal system protein TolQ compare
JDDGAC_05985 galU -2.8 -3.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_25045 rseA -2.8 -3.6 anti-sigma-E factor RseA compare
JDDGAC_24035 cysJ -2.7 -9.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_29980 sopA -2.7 -1.0 plasmid-partitioning protein SopA compare
JDDGAC_18205 wecA -2.7 -13.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_25750 purN -2.6 -7.9 phosphoribosylglycinamide formyltransferase compare
JDDGAC_19290 waaO -2.6 -4.3 lipopolysaccharide 3-alpha-galactosyltransferase compare
JDDGAC_10285 -2.6 -1.4 Cell division protein ZapA compare
JDDGAC_30155 -2.5 -1.5 hypothetical protein compare
JDDGAC_04130 ydcH -2.5 -1.7 Uncharacterized protein YdcH compare
JDDGAC_12265 proC -2.5 -4.3 pyrroline-5-carboxylate reductase compare
JDDGAC_24115 cysC -2.5 -10.1 Adenylyl-sulfate kinase compare
JDDGAC_17905 tatB -2.5 -1.8 Sec-independent protein translocase protein TatB compare
JDDGAC_19300 rfaJ -2.4 -5.9 glucosyltransferase compare
JDDGAC_17715 typA -2.3 -10.4 ribosome-dependent GTPase TypA compare
JDDGAC_19310 rfaL -2.3 -6.6 O-antigen ligase RfaL compare
JDDGAC_29175 yeeT -2.2 -1.6 Uncharacterized protein YeeT compare
JDDGAC_00920 kdgA -2.2 -2.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
JDDGAC_26670 cvpA -2.2 -4.2 colicin V production protein compare
JDDGAC_24040 cysI -2.2 -6.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_09815 mntS -2.1 -1.5 manganase accumulation protein MntS compare
JDDGAC_00545 marR -2.1 -1.9 MarR family transcriptional regulator compare
JDDGAC_10465 tolA -2.0 -2.0 cell envelope integrity protein TolA compare
JDDGAC_10470 tolR -1.9 -3.0 colicin uptake protein TolR compare
JDDGAC_25410 yfgM -1.9 -2.4 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_25690 -1.9 -1.6 acyltransferase compare
JDDGAC_20930 yheO -1.9 -2.2 Uncharacterized protein YheO compare
JDDGAC_26575 aroC -1.8 -3.3 chorismate synthase compare
JDDGAC_09385 lrp -1.8 -2.7 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_23425 fliN -1.8 -1.0 YscQ/HrcQ family type III secretion apparatus protein compare
JDDGAC_24675 -1.8 -1.2 hypothetical protein compare
JDDGAC_19305 rfaB -1.8 -3.7 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
JDDGAC_10455 pal -1.8 -2.7 peptidoglycan-associated lipoprotein Pal compare
JDDGAC_21185 aroE -1.7 -3.3 shikimate dehydrogenase compare
JDDGAC_17455 pfkA -1.7 -3.7 6-phosphofructokinase compare
JDDGAC_29425 -1.7 -1.2 Prophage protein compare
JDDGAC_14865 ytjA -1.7 -1.0 UPF0391 membrane protein YtjA compare
JDDGAC_28525 wzy -1.7 -2.6 O157 family O-antigen polymerase compare
JDDGAC_29975 sopA -1.6 -3.1 plasmid-partitioning protein SopA compare
JDDGAC_28575 perB -1.6 -2.3 GDP-perosamine N-acetyltransferase compare
JDDGAC_10460 tolB -1.6 -4.3 Tol-Pal system protein TolB compare
JDDGAC_20740 aroK -1.6 -1.9 shikimate kinase AroK compare
JDDGAC_21765 pnp -1.6 -3.8 polyribonucleotide nucleotidyltransferase compare
JDDGAC_27270 dsbE -1.6 -1.2 thiol:disulfide interchange protein DsbE compare
JDDGAC_19285 rfaP -1.6 -2.4 lipopolysaccharide core heptose(I) kinase RfaP compare
JDDGAC_02040 ydhF -1.6 -2.1 Oxidoreductase YdhF compare
JDDGAC_23460 -1.5 -1.4 Type III secretion protein EprH compare
JDDGAC_10485 ybgE -1.5 -0.9 cyd operon protein YbgE compare
JDDGAC_01920 -1.4 -1.2 FAD/NAD(P)-binding protein compare
JDDGAC_27425 yeiL -1.4 -1.0 Regulatory protein YeiL compare
JDDGAC_06890 -1.4 -0.9 HNH endonuclease compare
JDDGAC_29015 -1.4 -1.4 phage major capsid protein compare
JDDGAC_14075 acnB -1.3 -1.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_15570 yjgA -1.3 -4.2 ribosome-associated protein compare
JDDGAC_20745 aroB -1.3 -2.8 3-dehydroquinate synthase compare
JDDGAC_01260 yeaL -1.3 -1.6 UPF0756 membrane protein CKO_01811 compare
JDDGAC_22405 -1.3 -4.1 Surface composition regulator compare
JDDGAC_05250 nleG -1.3 -1.3 T3SS effector E3 ubiquitin-protein ligase NleG compare
JDDGAC_06670 -1.2 -1.8 hypothetical protein compare
JDDGAC_23420 -1.2 -0.9 type III secretion protein compare
JDDGAC_05730 ymfQ -1.2 -1.2 Bacteriophage Mu-like, Gp48 compare
JDDGAC_18405 mnmG -1.2 -3.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_25065 lepA -1.2 -2.1 translation elongation factor 4 compare
JDDGAC_05950 -1.2 -1.2 hypothetical protein compare
JDDGAC_00825 nudB -1.2 -0.6 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_09095 aroA -1.2 -5.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
JDDGAC_20970 bfd -1.2 -1.3 bacterioferritin-associated ferredoxin compare
JDDGAC_08805 yccU -1.1 -1.1 Uncharacterized protein YccU compare
JDDGAC_09690 bssR -1.1 -3.0 biofilm formation regulator BssR compare
JDDGAC_10070 nleB2 -1.1 -1.0 type III secretion system effector arginine glycosyltransferase NleB2 compare
JDDGAC_01600 yniA -1.1 -0.7 putative ketoamine kinase YniA compare
JDDGAC_01145 yoaC -1.1 -2.2 Uncharacterized protein YoaC compare
JDDGAC_20355 -1.1 -1.5 DUF1778 domain-containing protein compare
JDDGAC_02200 lacZ -1.1 -0.8 Beta-galactosidase/beta-glucuronidase compare
JDDGAC_17655 yihT -1.1 -1.2 sulfofructosephosphate aldolase compare
JDDGAC_03210 -1.1 -0.8 hypothetical protein compare
JDDGAC_21585 kdsC -1.1 -1.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
JDDGAC_14610 -1.1 -1.7 hypothetical protein compare
JDDGAC_14705 thrA -1.1 -6.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
JDDGAC_03170 -1.1 -1.2 Putative bacterial toxin ydaT compare
JDDGAC_10765 ybfE -1.1 -3.3 LexA regulated protein compare
JDDGAC_18395 asnC -1.1 -5.7 transcriptional regulator AsnC compare
JDDGAC_13950 pcnB -1.1 -2.1 polynucleotide adenylyltransferase PcnB compare
JDDGAC_30200 putA1 -1.1 -1.2 CopG family transcriptional regulator compare
JDDGAC_05620 -1.0 -2.1 hypothetical protein compare
JDDGAC_10810 nagB -1.0 -3.1 glucosamine-6-phosphate deaminase compare
JDDGAC_10205 -1.0 -1.4 Putative bacteriophage protein (Gene 65) compare
JDDGAC_03285 -1.0 -1.4 DUF968 domain-containing protein compare
JDDGAC_27715 bet -1.0 -1.9 phage recombination protein Bet compare
JDDGAC_25025 srmB -1.0 -4.7 ATP-dependent RNA helicase SrmB compare
JDDGAC_14710 thrL -1.0 -2.4 thr operon leader peptide compare
JDDGAC_08130 cadC1 -1.0 -0.7 transcriptional regulator compare
JDDGAC_06295 minC -1.0 -1.2 septum site-determining protein MinC compare
JDDGAC_11990 clpP -1.0 -1.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
JDDGAC_10170 -1.0 -1.4 recombinase RecA compare
JDDGAC_10375 galT -1.0 -2.7 galactose-1-phosphate uridylyltransferase compare
JDDGAC_20810 cysG -1.0 -3.9 siroheme synthase CysG compare
JDDGAC_14700 thrB -1.0 -4.4 homoserine kinase compare
JDDGAC_03560 ftrA -1.0 -3.0 transcriptional regulator FtrA compare
JDDGAC_02120 rsxE -1.0 -2.9 electron transport complex subunit RsxE compare
JDDGAC_08995 aspC -1.0 -2.1 aspartate transaminase compare
JDDGAC_00680 flhC -1.0 -0.7 flagellar transcriptional regulator FlhC compare
JDDGAC_21945 agaF -1.0 -2.3 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA compare
JDDGAC_13640 gmhB -0.9 -1.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
JDDGAC_27065 yfaE -0.9 -0.6 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_14615 -0.9 -1.6 fimbrial family protein compare
JDDGAC_29155 yeeX -0.9 -2.0 DUF496 domain-containing protein compare
JDDGAC_23110 -0.9 -1.3 Type I toxin-antitoxin system Ibs family toxin compare
JDDGAC_05580 -0.9 -1.3 hypothetical protein compare
JDDGAC_08270 yccJ -0.9 -2.8 Uncharacterized protein YccJ compare
JDDGAC_01675 btuC -0.9 -3.5 vitamin B12 ABC transporter permease BtuC compare
JDDGAC_02080 mliC -0.9 -2.8 C-type lysozyme inhibitor compare
JDDGAC_23550 yqeL -0.9 -1.3 Uncharacterized protein YqeL compare
JDDGAC_11240 fepG -0.9 -2.1 iron-enterobactin ABC transporter permease compare
JDDGAC_00890 lpxM -0.9 -2.6 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
JDDGAC_24885 tyrA -0.9 -5.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
JDDGAC_13120 -0.9 -0.9 DUF2635 domain-containing protein compare
JDDGAC_17125 5S_rrna -0.9 -1.1 5S ribosomal RNA compare
JDDGAC_16610 -0.9 -1.5 phage tail protein compare
JDDGAC_28205 -0.9 -1.3 ADP-ribosylglycohydrolase family protein compare
JDDGAC_02130 rsxD -0.9 -3.3 electron transport complex subunit RsxD compare
JDDGAC_01035 proQ -0.9 -2.6 RNA chaperone ProQ compare
JDDGAC_06575 emrE -0.9 -1.9 multidrug efflux SMR transporter EmrE compare
JDDGAC_15620 chpB -0.9 -1.7 type II toxin-antitoxin system ChpB family toxin compare
JDDGAC_11820 apt -0.9 -1.2 adenine phosphoribosyltransferase compare
JDDGAC_06690 -0.9 -1.4 hypothetical protein compare
JDDGAC_21730 nusA -0.9 -1.9 Transcription termination/antitermination protein NusA compare
JDDGAC_30180 repA2 -0.9 -2.9 Replication regulatory protein repA2 compare
JDDGAC_19415 -0.9 -0.8 DUF3251 domain-containing protein compare
JDDGAC_09890 ybiJ -0.9 -1.5 DUF1471 domain-containing protein compare
JDDGAC_06145 prs -0.9 -1.1 ribose-phosphate diphosphokinase compare
JDDGAC_27045 -0.9 -0.5 hypothetical protein compare
JDDGAC_11350 cusR -0.9 -1.2 copper response regulator transcription factor CusR compare
JDDGAC_00880 znuA -0.9 -2.0 zinc ABC transporter substrate-binding protein ZnuA compare
JDDGAC_11245 fepC -0.8 -2.4 ferrienterobactin ABC transporter ATPase compare
JDDGAC_27730 -0.8 -1.1 SIR2-like domain-containing protein compare
JDDGAC_30055 yubL -0.8 -0.8 UPF0401 protein YubL compare
JDDGAC_12715 -0.8 -1.6 LuxR family transcriptional regulator compare
JDDGAC_08190 efeU -0.8 -1.3 Ferrous iron permease EfeU compare
JDDGAC_07515 cgsF -0.8 -0.9 curli production assembly/transport protein CsgF compare
JDDGAC_11290 hokE -0.8 -2.1 type I toxin-antitoxin system toxin HokE compare
JDDGAC_07280 rne -0.8 -1.4 ribonuclease E compare
JDDGAC_04725 ynaL -0.8 -0.7 Protein YnaL compare
JDDGAC_24880 aroF -0.8 -3.7 3-deoxy-7-phosphoheptulonate synthase AroF compare
JDDGAC_12165 queA -0.8 -3.5 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
JDDGAC_27995 -0.8 -1.0 IS4 family transposase compare
JDDGAC_27665 -0.8 -2.1 DUF551 domain-containing protein compare
JDDGAC_04410 -0.8 -0.8 Tail completion protein Z compare
JDDGAC_01860 lpp -0.8 -1.3 murein lipoprotein Lpp compare
JDDGAC_00945 -0.8 -1.5 hypothetical protein compare
JDDGAC_10815 nagA -0.8 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
JDDGAC_01530 osmE -0.8 -2.2 osmotically-inducible lipoprotein OsmE compare
JDDGAC_09505 ybjQ -0.8 -1.3 UPF0145 protein YbjQ compare
JDDGAC_01415 gdhA -0.8 -2.1 NADP-specific glutamate dehydrogenase compare
JDDGAC_19185 rpoZ -0.8 -0.6 DNA-directed RNA polymerase subunit omega compare
JDDGAC_01040 prc -0.8 -3.3 carboxy terminal-processing peptidase compare
JDDGAC_25790 focB -0.8 -3.9 formate transporter FocB compare
JDDGAC_19275 rfaQ -0.8 -2.8 lipopolysaccharide core heptosyltransferase RfaQ compare
JDDGAC_16305 phnK -0.7 -2.1 phosphonate C-P lyase system protein PhnK compare
JDDGAC_12190 brnQ -0.7 -4.4 branched-chain amino acid transporter carrier protein BrnQ compare
JDDGAC_19765 -0.7 -1.1 Type I toxin-antitoxin system toxin Ldr family protein compare
JDDGAC_09390 trxB -0.7 -0.9 thioredoxin-disulfide reductase compare
JDDGAC_18590 tnaC -0.7 -1.0 tryptophanase leader peptide compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms