Experiment set2S21 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Hypoxanthine 0.7347 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS10480 -2.6 -3.0 DUF1190 domain-containing protein compare
A4249_RS06665 -1.7 -2.2 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS00895 -1.5 -2.3 DUF1476 domain-containing protein compare
A4249_RS10295 -1.5 -1.4 hypothetical protein compare
A4249_RS04475 -1.4 -2.6 response regulator transcription factor compare
A4249_RS07105 -1.3 -2.5 hypothetical protein compare
A4249_RS10815 -1.3 -3.0 Do family serine endopeptidase compare
A4249_RS07995 -1.3 -2.2 type II 3-dehydroquinate dehydratase compare
A4249_RS06230 -1.2 -2.0 OmpH family outer membrane protein compare
A4249_RS04490 -1.1 -2.4 cobaltochelatase subunit CobS compare
A4249_RS14905 -1.1 -2.0 phosphonate ABC transporter ATP-binding protein compare
A4249_RS17075 -1.1 -1.3 energy transducer TonB compare
A4249_RS04125 -1.1 -1.5 mechanosensitive ion channel family protein compare
A4249_RS10360 -1.1 -1.6 HAMP domain-containing sensor histidine kinase compare
A4249_RS06985 -1.0 -1.3 hypothetical protein compare
A4249_RS01590 -1.0 -1.7 site-specific DNA-methyltransferase compare
A4249_RS15360 -1.0 -1.7 DNA replication/repair protein RecF compare
A4249_RS06930 -1.0 -2.7 SOS response-associated peptidase family protein compare
A4249_RS06780 -0.9 -1.4 YicC family protein compare
A4249_RS05300 -0.9 -1.5 hypothetical protein compare
A4249_RS07910 -0.9 -1.7 2-hydroxyacid dehydrogenase compare
A4249_RS05960 -0.8 -2.1 MerR family transcriptional regulator compare
A4249_RS14205 -0.8 -1.6 response regulator compare
A4249_RS10820 -0.8 -1.0 cytochrome c-type biogenesis protein CcmH compare
A4249_RS16585 -0.8 -2.5 hypothetical protein compare
A4249_RS09725 -0.8 -1.4 hypothetical protein compare
A4249_RS12085 -0.8 -1.8 DUF883 family protein compare
A4249_RS14895 -0.8 -2.0 phosphonate ABC transporter, permease protein PhnE compare
A4249_RS14065 -0.8 -2.3 MFS transporter compare
A4249_RS00270 -0.8 -1.3 very short patch repair endonuclease compare
A4249_RS15110 -0.8 -2.3 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS01815 -0.7 -3.2 DNA mismatch endonuclease Vsr compare
A4249_RS12915 -0.7 -1.5 hypothetical protein compare
A4249_RS01415 -0.7 -1.2 phage Gp37/Gp68 family protein compare
A4249_RS10105 -0.7 -0.8 DUF2460 domain-containing protein compare
A4249_RS16725 -0.7 -1.3 hypothetical protein compare
A4249_RS09275 -0.7 -3.1 DUF3035 domain-containing protein compare
A4249_RS12455 -0.7 -1.7 hypothetical protein compare
A4249_RS13175 -0.7 -1.0 Rrf2 family transcriptional regulator compare
A4249_RS08855 -0.7 -1.7 L,D-transpeptidase family protein compare
A4249_RS05620 -0.6 -2.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS16935 -0.6 -1.7 Plug domain-containing protein compare
A4249_RS07060 -0.6 -1.0 single-stranded DNA-binding protein compare
A4249_RS13535 -0.6 -2.4 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS15345 -0.6 -1.7 DUF6491 family protein compare
A4249_RS16765 -0.6 -1.5 hypothetical protein compare
A4249_RS01610 -0.6 -0.9 TetR/AcrR family transcriptional regulator compare
A4249_RS07470 -0.6 -0.8 hypothetical protein compare
A4249_RS11425 -0.6 -1.3 ATP-binding cassette domain-containing protein compare
A4249_RS11125 -0.6 -4.1 glycosyltransferase family 9 protein compare
A4249_RS07940 -0.6 -2.1 hypothetical protein compare
A4249_RS10430 -0.6 -3.3 S1/P1 Nuclease compare
A4249_RS13195 -0.5 -1.9 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS11985 -0.5 -1.5 hypothetical protein compare
A4249_RS04995 -0.5 -1.1 DUF2171 domain-containing protein compare
A4249_RS06370 -0.5 -1.0 hypothetical protein compare
A4249_RS16520 -0.5 -2.0 hypothetical protein compare
A4249_RS07665 -0.5 -1.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS16085 -0.5 -0.9 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS14985 -0.5 -2.3 DHA2 family efflux MFS transporter permease subunit compare
A4249_RS10990 -0.5 -1.0 ATP-dependent protease ATPase subunit HslU compare
A4249_RS09210 -0.5 -1.4 hypothetical protein compare
A4249_RS16280 -0.5 -1.8 general stress protein compare
A4249_RS10585 -0.5 -1.2 extensin family protein compare
A4249_RS15980 -0.5 -1.6 multidrug efflux SMR transporter compare
A4249_RS14840 -0.5 -2.1 carboxynorspermidine decarboxylase compare
A4249_RS02325 -0.5 -0.7 23S ribosomal RNA compare
A4249_RS15820 -0.5 -2.1 arsenate reductase (glutaredoxin) compare
A4249_RS13185 -0.5 -1.6 dihydrolipoyl dehydrogenase compare
A4249_RS01135 -0.5 -1.7 DsbA family protein compare
A4249_RS15320 -0.5 -1.1 hypothetical protein compare
A4249_RS13495 -0.5 -1.9 organic hydroperoxide resistance protein compare
A4249_RS01190 -0.5 -1.0 hypothetical protein compare
A4249_RS13200 -0.5 -1.2 thiamine pyrophosphate-dependent enzyme compare
A4249_RS15055 -0.5 -1.7 SprT family zinc-dependent metalloprotease compare
A4249_RS08885 -0.5 -1.1 DUF465 domain-containing protein compare
A4249_RS01265 -0.4 -1.9 hypothetical protein compare
A4249_RS10375 -0.4 -2.1 DUF1491 family protein compare
A4249_RS13750 -0.4 -0.9 hypothetical protein compare
A4249_RS14875 -0.4 -1.2 benzoate/H(+) symporter BenE family transporter compare
A4249_RS12275 -0.4 -1.8 cobaltochelatase subunit CobT compare
A4249_RS10390 -0.4 -1.0 translation elongation factor 4 compare
A4249_RS04350 -0.4 -1.2 lipopolysaccharide biosynthesis protein compare
A4249_RS07140 -0.4 -2.8 hypothetical protein compare
A4249_RS14215 -0.4 -1.6 ester cyclase compare
A4249_RS14135 -0.4 -0.5 ATP-binding protein compare
A4249_RS04495 -0.4 -1.8 organic hydroperoxide resistance protein compare
A4249_RS09250 -0.4 -1.8 murein L,D-transpeptidase catalytic domain family protein compare
A4249_RS15505 -0.4 -2.1 DUF3617 family protein compare
A4249_RS06095 -0.4 -2.2 patatin-like phospholipase family protein compare
A4249_RS06525 -0.4 -0.6 SCP2 sterol-binding domain-containing protein compare
A4249_RS11525 -0.4 -1.9 DsrE family protein compare
A4249_RS01325 -0.4 -0.6 hypothetical protein compare
A4249_RS12205 -0.4 -0.6 DUF484 family protein compare
A4249_RS11780 -0.4 -0.5 hypothetical protein compare
A4249_RS05590 -0.4 -1.2 amino acid ABC transporter substrate-binding protein compare
A4249_RS16365 -0.4 -1.7 DUF393 domain-containing protein compare
A4249_RS08720 -0.4 -1.4 PaaI family thioesterase compare
A4249_RS11285 -0.4 -1.2 double-strand break repair protein AddB compare
A4249_RS02745 -0.4 -1.8 flagellin compare
A4249_RS00720 -0.4 -1.0 DUF1294 domain-containing protein compare
A4249_RS14965 -0.4 -2.1 MarR family transcriptional regulator compare
A4249_RS04085 -0.4 -1.2 ribonuclease E/G compare
A4249_RS02645 -0.4 -0.5 cobalamin biosynthesis protein CbiG compare
A4249_RS11185 -0.4 -1.1 exopolysaccharide biosynthesis protein compare
A4249_RS01220 -0.4 -1.1 hypothetical protein compare
A4249_RS00810 -0.4 -2.9 glycosyltransferase family 4 protein compare
A4249_RS03815 -0.4 -1.8 antibiotic biosynthesis monooxygenase compare
A4249_RS09450 -0.4 -1.7 alpha/beta hydrolase compare
A4249_RS03225 -0.4 -1.5 hypothetical protein compare
A4249_RS08825 -0.4 -1.3 tryptophan-rich sensory protein compare
A4249_RS15050 -0.4 -1.2 lysozyme inhibitor LprI family protein compare
A4249_RS10705 -0.4 -1.7 imidazole glycerol phosphate synthase subunit HisH compare
A4249_RS13575 -0.4 -2.1 GNAT family N-acetyltransferase compare
A4249_RS04240 -0.4 -1.7 DNA-processing protein DprA compare
A4249_RS10060 -0.4 -1.9 RluA family pseudouridine synthase compare
A4249_RS14795 -0.4 -2.3 acyl dehydratase compare
A4249_RS13480 -0.4 -1.8 protein-export chaperone SecB compare
A4249_RS12210 -0.4 -0.9 tyrosine recombinase XerC compare
A4249_RS01340 -0.4 -1.6 phosphoadenosine phosphosulfate reductase family protein compare
A4249_RS02220 -0.4 -1.1 MaoC family dehydratase compare
A4249_RS08765 -0.4 -1.8 Lrp/AsnC family transcriptional regulator compare
A4249_RS12340 -0.3 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
A4249_RS11180 -0.3 -1.2 YqaA family protein compare
A4249_RS02820 -0.3 -1.1 Ppx/GppA phosphatase family protein compare
A4249_RS06835 -0.3 -1.2 prephenate dehydratase domain-containing protein compare
A4249_RS13560 -0.3 -1.1 glutaredoxin 3 compare
A4249_RS04220 -0.3 -0.9 low molecular weight phosphotyrosine protein phosphatase compare
A4249_RS00905 -0.3 -1.7 DNA-deoxyinosine glycosylase compare
A4249_RS01460 -0.3 -0.7 signal peptide peptidase SppA compare
A4249_RS16470 -0.3 -1.9 hypothetical protein compare
A4249_RS14695 -0.3 -1.1 transcription elongation factor GreA compare
A4249_RS07205 -0.3 -2.2 hypothetical protein compare
A4249_RS05625 -0.3 -2.8 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS15690 -0.3 -2.2 DsbA family oxidoreductase compare
A4249_RS02975 -0.3 -1.0 oligosaccharide flippase family protein compare
A4249_RS00290 -0.3 -0.5 histidine phosphatase family protein compare
A4249_RS11430 -0.3 -0.9 cell division protein compare
A4249_RS13615 -0.3 -0.7 Rrf2 family transcriptional regulator compare
A4249_RS02620 -0.3 -2.0 DNA repair protein RecN compare
A4249_RS07380 -0.3 -1.4 exopolysaccharide biosynthesis protein compare
A4249_RS09415 -0.3 -1.5 deoxyguanosinetriphosphate triphosphohydrolase compare
A4249_RS15850 -0.3 -1.1 MgtC/SapB family protein compare
A4249_RS10535 -0.3 -2.1 DUF962 domain-containing protein compare
A4249_RS10115 -0.3 -1.1 phage tail tape measure protein compare
A4249_RS14780 -0.3 -1.2 NepR family anti-sigma factor compare
A4249_RS14640 -0.3 -1.8 acetyl-CoA C-acetyltransferase compare
A4249_RS16695 -0.3 -0.9 potassium-transporting ATPase subunit F compare
A4249_RS07005 -0.3 -1.4 YqaJ viral recombinase family protein compare
A4249_RS04080 -0.3 -1.1 M48 family metalloprotease compare
A4249_RS05715 -0.3 -0.7 hypothetical protein compare
A4249_RS09445 -0.3 -1.1 SdpI family protein compare
A4249_RS11570 -0.3 -0.9 YeeE/YedE thiosulfate transporter family protein compare
A4249_RS06785 -0.3 -1.0 endolytic transglycosylase MltG compare
A4249_RS13700 -0.3 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
A4249_RS06990 -0.3 -1.2 MT-A70 family methyltransferase compare
A4249_RS13590 -0.3 -1.6 [protein-PII] uridylyltransferase compare
A4249_RS08500 -0.3 -0.9 K+/H+ antiporter subunit F compare
A4249_RS08495 -0.3 -0.4 Na+/H+ antiporter subunit E compare
A4249_RS07900 -0.3 -1.0 Do family serine endopeptidase compare
A4249_RS07015 -0.3 -0.6 hypothetical protein compare
A4249_RS07985 -0.3 -0.8 type II toxin-antitoxin system VapC family toxin compare
A4249_RS15490 -0.3 -1.9 transglutaminase family protein compare
A4249_RS04415 -0.3 -2.0 sigma-54 dependent transcriptional regulator compare
A4249_RS08820 -0.3 -1.5 bacterioferritin compare
A4249_RS02235 -0.3 -2.1 SDR family oxidoreductase compare
A4249_RS15960 -0.3 -0.8 transcriptional regulator compare
A4249_RS12425 -0.3 -0.9 Smr/MutS family protein compare
A4249_RS06580 -0.3 -0.9 HWE histidine kinase domain-containing protein compare
A4249_RS14530 -0.3 -1.4 OmpA family protein compare
A4249_RS06560 -0.3 -1.4 amino acid permease compare
A4249_RS02765 -0.3 -0.5 hypothetical protein compare
A4249_RS03455 -0.3 -1.1 cysteine hydrolase compare
A4249_RS03670 -0.3 -0.7 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS13400 -0.3 -0.8 DUF2939 domain-containing protein compare
A4249_RS13345 -0.3 -0.9 tRNA pseudouridine(55) synthase TruB compare
A4249_RS00580 -0.3 -0.9 helix-turn-helix transcriptional regulator compare
A4249_RS03440 -0.3 -0.7 hypothetical protein compare
A4249_RS13165 -0.3 -1.3 RsmB/NOP family class I SAM-dependent RNA methyltransferase compare
A4249_RS14190 -0.3 -1.1 hypothetical protein compare
A4249_RS03040 -0.3 -1.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase compare
A4249_RS09245 -0.3 -1.7 amidohydrolase family protein compare
A4249_RS14835 -0.3 -1.4 S41 family peptidase compare
A4249_RS02750 -0.3 -1.5 hypothetical protein compare
A4249_RS03340 -0.3 -1.9 PepSY domain-containing protein compare
A4249_RS04725 -0.3 -1.7 acyl-CoA dehydrogenase compare
A4249_RS14455 -0.2 -1.2 response regulator compare
A4249_RS10520 -0.2 -1.7 hypothetical protein compare
A4249_RS01065 -0.2 -1.7 SLC13 family permease compare
A4249_RS10750 -0.2 -1.1 hypothetical protein compare
A4249_RS05900 -0.2 -0.5 hypothetical protein compare
A4249_RS08535 -0.2 -0.3 flagellar assembly protein FliX compare
A4249_RS11045 -0.2 -1.4 hybrid sensor histidine kinase/response regulator compare
A4249_RS05375 -0.2 -1.3 damage-inducible protein compare
A4249_RS04060 -0.2 -0.9 ABC transporter ATP-binding protein compare
A4249_RS02800 -0.2 -1.2 aminotransferase class IV compare
A4249_RS15485 -0.2 -1.0 biliverdin-producing heme oxygenase compare
A4249_RS00640 -0.2 -1.2 cell wall hydrolase compare
A4249_RS11590 -0.2 -1.2 sulfite exporter TauE/SafE family protein compare
A4249_RS16800 -0.2 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Hypoxanthine across organisms