Experiment set2S20 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Hypoxanthine 0.7347 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS11825 -2.3 -1.7 DUF6521 family protein compare
A4249_RS07610 -2.1 -2.0 methyltransferase type 11 compare
A4249_RS16085 -1.9 -2.3 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS06665 -1.7 -2.5 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS06525 -1.6 -1.8 SCP2 sterol-binding domain-containing protein compare
A4249_RS01235 -1.4 -2.1 hypothetical protein compare
A4249_RS02325 -1.3 -1.5 23S ribosomal RNA compare
A4249_RS01650 -1.3 -0.9 DUF1289 domain-containing protein compare
A4249_RS04475 -1.3 -2.3 response regulator transcription factor compare
A4249_RS02645 -1.2 -1.6 cobalamin biosynthesis protein CbiG compare
A4249_RS15960 -1.2 -2.6 transcriptional regulator compare
A4249_RS17075 -1.2 -1.6 energy transducer TonB compare
A4249_RS14255 -1.2 -1.3 ribonuclease P protein component compare
A4249_RS11780 -1.2 -1.1 hypothetical protein compare
A4249_RS13190 -1.0 -2.7 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS09035 -1.0 -1.2 redox-regulated ATPase YchF compare
A4249_RS06370 -0.9 -1.2 hypothetical protein compare
A4249_RS12260 -0.9 -1.8 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS09405 -0.9 -1.5 beta-N-acetylhexosaminidase compare
A4249_RS13195 -0.9 -3.0 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS04450 -0.9 -2.0 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS08535 -0.9 -1.4 flagellar assembly protein FliX compare
A4249_RS06785 -0.9 -2.2 endolytic transglycosylase MltG compare
A4249_RS07105 -0.8 -1.7 hypothetical protein compare
A4249_RS08300 -0.8 -1.6 cold-shock protein compare
A4249_RS13180 -0.8 -1.9 SDR family oxidoreductase compare
A4249_RS13200 -0.8 -1.5 thiamine pyrophosphate-dependent enzyme compare
A4249_RS11560 -0.7 -1.0 peroxiredoxin compare
A4249_RS09265 -0.7 -1.4 exodeoxyribonuclease VII large subunit compare
A4249_RS13450 -0.7 -2.0 PilZ domain-containing protein compare
A4249_RS05620 -0.7 -3.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS14205 -0.7 -1.2 response regulator compare
A4249_RS09645 -0.7 -2.1 hypothetical protein compare
A4249_RS12455 -0.7 -1.6 hypothetical protein compare
A4249_RS00290 -0.7 -1.1 histidine phosphatase family protein compare
A4249_RS11125 -0.7 -4.9 glycosyltransferase family 9 protein compare
A4249_RS16455 -0.7 -1.0 helix-turn-helix transcriptional regulator compare
A4249_RS08270 -0.7 -1.7 DedA family protein compare
A4249_RS00605 -0.6 -1.1 host attachment protein compare
A4249_RS08855 -0.6 -1.6 L,D-transpeptidase family protein compare
A4249_RS13535 -0.6 -2.4 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS11425 -0.6 -1.7 ATP-binding cassette domain-containing protein compare
A4249_RS00145 -0.6 -1.1 SURF1 family protein compare
A4249_RS07320 -0.6 -1.4 hypothetical protein compare
A4249_RS02640 -0.6 -1.2 hypothetical protein compare
A4249_RS11905 -0.6 -1.8 hypothetical protein compare
A4249_RS00505 -0.6 -1.9 GNAT family N-acetyltransferase compare
A4249_RS15285 -0.6 -2.0 hypothetical protein compare
A4249_RS08775 -0.6 -1.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
A4249_RS10540 -0.5 -1.7 DEAD/DEAH box helicase compare
A4249_RS07910 -0.5 -1.0 2-hydroxyacid dehydrogenase compare
A4249_RS07015 -0.5 -0.9 hypothetical protein compare
A4249_RS09350 -0.5 -1.3 PGPGW domain-containing protein compare
A4249_RS00895 -0.5 -1.2 DUF1476 domain-containing protein compare
A4249_RS10390 -0.5 -1.1 translation elongation factor 4 compare
A4249_RS07505 -0.5 -1.9 hypothetical protein compare
A4249_RS05980 -0.5 -0.8 DUF177 domain-containing protein compare
A4249_RS01905 -0.5 -0.9 TrbC/VirB2 family protein compare
A4249_RS08220 -0.5 -0.9 phosphoribosylglycinamide formyltransferase compare
A4249_RS07335 -0.5 -2.3 peptide-methionine (R)-S-oxide reductase MsrB compare
A4249_RS00240 -0.5 -1.1 rhodanese family protein compare
A4249_RS14780 -0.5 -2.7 NepR family anti-sigma factor compare
A4249_RS06560 -0.5 -2.5 amino acid permease compare
A4249_RS08585 -0.5 -1.2 ABC-type transport auxiliary lipoprotein family protein compare
A4249_RS16800 -0.5 -1.6 hypothetical protein compare
A4249_RS01480 -0.5 -1.0 cell division protein MraZ compare
A4249_RS01590 -0.5 -0.8 site-specific DNA-methyltransferase compare
A4249_RS09100 -0.5 -1.8 aa3-type cytochrome c oxidase subunit IV compare
A4249_RS05625 -0.5 -3.8 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS14840 -0.5 -1.8 carboxynorspermidine decarboxylase compare
A4249_RS09725 -0.5 -1.2 hypothetical protein compare
A4249_RS07290 -0.5 -1.1 ribonuclease E/G compare
A4249_RS03370 -0.5 -0.7 copper-binding protein compare
A4249_RS08725 -0.5 -1.9 hypothetical protein compare
A4249_RS16790 -0.5 -1.4 hypothetical protein compare
A4249_RS06165 -0.5 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS02875 -0.5 -2.5 autotransporter assembly complex family protein compare
A4249_RS00740 -0.4 -2.1 HAD family hydrolase compare
A4249_RS14900 -0.4 -2.3 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS02800 -0.4 -2.4 aminotransferase class IV compare
A4249_RS12640 -0.4 -0.5 hypothetical protein compare
A4249_RS05460 -0.4 -2.0 iron ABC transporter permease compare
A4249_RS10085 -0.4 -2.3 DnaJ C-terminal domain-containing protein compare
A4249_RS17085 -0.4 -0.8 sugar O-acetyltransferase compare
A4249_RS04060 -0.4 -1.1 ABC transporter ATP-binding protein compare
A4249_RS01970 -0.4 -2.7 2-dehydro-3-deoxygalactonokinase compare
A4249_RS02620 -0.4 -2.2 DNA repair protein RecN compare
A4249_RS02255 -0.4 -1.0 DUF2093 domain-containing protein compare
A4249_RS12210 -0.4 -0.9 tyrosine recombinase XerC compare
A4249_RS16570 -0.4 -1.6 hypothetical protein compare
A4249_RS08510 -0.4 -1.3 hypothetical protein compare
A4249_RS06485 -0.4 -1.1 hypothetical protein compare
A4249_RS05960 -0.4 -1.2 MerR family transcriptional regulator compare
A4249_RS12830 -0.4 -1.0 YkvA family protein compare
A4249_RS09285 -0.4 -1.6 Tat pathway signal sequence domain protein compare
A4249_RS16365 -0.4 -1.7 DUF393 domain-containing protein compare
A4249_RS14760 -0.4 -2.6 NAD-dependent succinate-semialdehyde dehydrogenase compare
A4249_RS08705 -0.4 -1.5 response regulator compare
A4249_RS12570 -0.4 -1.3 hypothetical protein compare
A4249_RS01285 -0.4 -1.6 head decoration protein compare
A4249_RS05370 -0.4 -1.7 DNA polymerase Y family protein compare
A4249_RS16970 -0.4 -1.7 hypothetical protein compare
A4249_RS04635 -0.4 -3.3 cyclic nucleotide-binding domain-containing protein compare
A4249_RS08285 -0.4 -0.8 preQ(1) synthase compare
A4249_RS10915 -0.4 -0.9 hypothetical protein compare
A4249_RS01315 -0.4 -1.2 hypothetical protein compare
A4249_RS05590 -0.4 -1.2 amino acid ABC transporter substrate-binding protein compare
A4249_RS16555 -0.4 -1.3 hypothetical protein compare
A4249_RS06550 -0.4 -1.4 chorismate mutase compare
A4249_RS15865 -0.4 -0.7 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS10500 -0.4 -1.0 PspA/IM30 family protein compare
A4249_RS07145 -0.4 -0.7 hypothetical protein compare
A4249_RS16010 -0.4 -0.8 flagellar type III secretion system pore protein FliP compare
A4249_RS00790 -0.4 -1.6 cell division protein ZapA compare
A4249_RS07115 -0.4 -1.4 hypothetical protein compare
A4249_RS14640 -0.4 -2.5 acetyl-CoA C-acetyltransferase compare
A4249_RS02395 -0.4 -1.4 FecR domain-containing protein compare
A4249_RS08720 -0.4 -1.1 PaaI family thioesterase compare
A4249_RS15755 -0.4 -1.5 amino acid racemase compare
A4249_RS07960 -0.4 -2.4 DUF1499 domain-containing protein compare
A4249_RS09210 -0.4 -1.0 hypothetical protein compare
A4249_RS01290 -0.4 -2.2 S49 family peptidase compare
A4249_RS02530 -0.3 -2.0 GMP synthase compare
A4249_RS15660 -0.3 -1.0 hypothetical protein compare
A4249_RS05595 -0.3 -1.0 dicarboxylate/amino acid:cation symporter compare
A4249_RS06690 -0.3 -1.1 DUF423 domain-containing protein compare
A4249_RS15050 -0.3 -1.5 lysozyme inhibitor LprI family protein compare
A4249_RS01190 -0.3 -1.0 hypothetical protein compare
A4249_RS01420 -0.3 -2.2 hypothetical protein compare
A4249_RS01325 -0.3 -0.4 hypothetical protein compare
A4249_RS06395 -0.3 -1.9 hypothetical protein compare
A4249_RS07900 -0.3 -1.3 Do family serine endopeptidase compare
A4249_RS12030 -0.3 -1.3 prepilin peptidase compare
A4249_RS12340 -0.3 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
A4249_RS03115 -0.3 -0.7 signal peptidase II compare
A4249_RS11550 -0.3 -1.4 cupin domain-containing protein compare
A4249_RS11640 -0.3 -1.2 hypothetical protein compare
A4249_RS04790 -0.3 -1.1 sulfurtransferase TusA family protein compare
A4249_RS05745 -0.3 -1.6 ImmA/IrrE family metallo-endopeptidase compare
A4249_RS14965 -0.3 -1.2 MarR family transcriptional regulator compare
A4249_RS00300 -0.3 -1.5 hydroxyacylglutathione hydrolase compare
A4249_RS00720 -0.3 -0.7 DUF1294 domain-containing protein compare
A4249_RS14155 -0.3 -1.3 thioredoxin compare
A4249_RS05690 -0.3 -1.2 DNA polymerase Y family protein compare
A4249_RS14625 -0.3 -0.8 hypothetical protein compare
A4249_RS10245 -0.3 -1.3 MucR family transcriptional regulator compare
A4249_RS16635 -0.3 -1.6 hypothetical protein compare
A4249_RS13495 -0.3 -0.9 organic hydroperoxide resistance protein compare
A4249_RS12070 -0.3 -1.4 hypothetical protein compare
A4249_RS10705 -0.3 -1.7 imidazole glycerol phosphate synthase subunit HisH compare
A4249_RS10710 -0.3 -0.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
A4249_RS15505 -0.3 -1.5 DUF3617 family protein compare
A4249_RS06105 -0.3 -1.4 cytochrome b compare
A4249_RS14565 -0.3 -1.4 DUF488 domain-containing protein compare
A4249_RS15345 -0.3 -1.0 DUF6491 family protein compare
A4249_RS08685 -0.3 -1.0 hypothetical protein compare
A4249_RS11450 -0.3 -1.5 histidinol-phosphate transaminase compare
A4249_RS13125 -0.3 -0.8 ribonuclease PH compare
A4249_RS11455 -0.3 -1.4 hypothetical protein compare
A4249_RS16155 -0.3 -0.5 tRNA-Glu compare
A4249_RS06990 -0.3 -1.4 MT-A70 family methyltransferase compare
A4249_RS13055 -0.3 -1.3 Lrp/AsnC ligand binding domain-containing protein compare
A4249_RS02300 -0.3 -1.2 rhomboid family intramembrane serine protease compare
A4249_RS15090 -0.3 -1.6 NAD(+) diphosphatase compare
A4249_RS01670 -0.3 -1.1 excinuclease ABC subunit UvrC compare
A4249_RS10970 -0.3 -1.7 N-formylglutamate amidohydrolase compare
A4249_RS09275 -0.3 -0.9 DUF3035 domain-containing protein compare
A4249_RS09600 -0.3 -1.4 hypothetical protein compare
A4249_RS12825 -0.3 -0.7 SDR family oxidoreductase compare
A4249_RS01275 -0.3 -1.1 hypothetical protein compare
A4249_RS12090 -0.3 -1.7 fumarylacetoacetate hydrolase family protein compare
A4249_RS04555 -0.3 -1.5 transporter compare
A4249_RS01355 -0.3 -0.7 hypothetical protein compare
A4249_RS04085 -0.3 -0.8 ribonuclease E/G compare
A4249_RS06995 -0.3 -1.1 DUF968 domain-containing protein compare
A4249_RS14300 -0.3 -2.0 DUF2219 family protein compare
A4249_RS12000 -0.3 -1.7 type II secretion system F family protein compare
A4249_RS07120 -0.3 -0.9 hypothetical protein compare
A4249_RS13590 -0.3 -1.4 [protein-PII] uridylyltransferase compare
A4249_RS01230 -0.3 -0.5 hypothetical protein compare
A4249_RS13185 -0.3 -0.7 dihydrolipoyl dehydrogenase compare
A4249_RS16300 -0.3 -0.9 DUF3606 domain-containing protein compare
A4249_RS03570 -0.3 -0.6 TonB family protein compare
A4249_RS07940 -0.3 -1.0 hypothetical protein compare
A4249_RS10055 -0.3 -2.1 DUF2799 domain-containing protein compare
A4249_RS01220 -0.3 -0.7 hypothetical protein compare
A4249_RS13165 -0.3 -1.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase compare
A4249_RS09480 -0.3 -0.9 hypothetical protein compare
A4249_RS11180 -0.3 -1.0 YqaA family protein compare
A4249_RS16505 -0.3 -1.1 SEC-C metal-binding domain-containing protein compare
A4249_RS10910 -0.3 -1.7 hypothetical protein compare
A4249_RS07030 -0.3 -0.8 hypothetical protein compare
A4249_RS08440 -0.3 -0.3 TlyA family RNA methyltransferase compare
A4249_RS04080 -0.3 -1.0 M48 family metalloprotease compare
A4249_RS03225 -0.3 -0.8 hypothetical protein compare
A4249_RS03440 -0.3 -0.9 hypothetical protein compare
A4249_RS16785 -0.3 -2.1 terminase large subunit compare
A4249_RS05885 -0.3 -1.2 cold-shock protein compare
A4249_RS09620 -0.3 -0.9 flagellar basal-body rod protein FlgF compare
A4249_RS04525 -0.3 -1.7 DUF4287 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Hypoxanthine across organisms