Experiment set2S198 for Mucilaginibacter yixingensis YX-36 DSM 26809

Compare to:

R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM

Group: stress
Media: R2A + 6-methoxy-2(3H)-benzoxazolone (0.5 mM)
Culturing: Mucilaginibacter_YX36_ML5a, tube, Aerobic, at 30 (C), shaken=180 rpm
By: Marta Torres on 12/12/23
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 5 genes in this experiment

For stress 6-methoxy-2(3H)-benzoxazolone in Mucilaginibacter yixingensis YX-36 DSM 26809

For stress 6-methoxy-2(3H)-benzoxazolone across organisms

SEED Subsystems

Subsystem #Specific
Ribosome biogenesis bacterial 1
Thiamin biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I 2 2 2
hydroxymethylpyrimidine salvage 2 2 2
pseudouridine degradation 2 1 1
superpathway of thiamine diphosphate biosynthesis I 10 9 4
thiamine diphosphate salvage II 5 4 2
thiazole component of thiamine diphosphate biosynthesis I 6 5 2
superpathway of thiamine diphosphate biosynthesis III (eukaryotes) 7 4 2
thiamine diphosphate salvage IV (yeast) 7 4 2
superpathway of thiamine diphosphate biosynthesis II 11 9 3
thiamine diphosphate formation from pyrithiamine and oxythiamine (yeast) 8 4 2
bacimethrin and bacimethrin pyrophosphate biosynthesis 4 1 1
thiazole component of thiamine diphosphate biosynthesis II 7 5 1
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II 8 3 1