Experiment set2S194 for Mucilaginibacter yixingensis YX-36 DSM 26809

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R2A no stress control

Group: no stress control
Media: R2A
Culturing: Mucilaginibacter_YX36_ML5a, tube, Aerobic, at 30 (C), shaken=180 rpm
By: Marta Torres on 12/12/23
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 1 genes in this experiment

SEED Subsystems

Subsystem #Specific
Entner-Doudoroff Pathway 1
Glycolysis and Gluconeogenesis 1
Glycolysis and Gluconeogenesis, including Archaeal enzymes 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
glycolysis III (from glucose) 11 11 2
glycolysis II (from fructose 6-phosphate) 11 11 2
glycolysis VI (from fructose) 11 8 2
homolactic fermentation 12 11 2
glycolysis I (from glucose 6-phosphate) 13 12 2
superpathway of glycolysis and the Entner-Doudoroff pathway 17 15 2
Entner-Doudoroff pathway I 9 8 1
superpathway of hexitol degradation (bacteria) 18 13 2
Entner-Doudoroff pathway III (semi-phosphorylative) 9 6 1
superpathway of anaerobic sucrose degradation 19 15 2
hexitol fermentation to lactate, formate, ethanol and acetate 19 12 2
Rubisco shunt 10 9 1
glycolysis IV 10 8 1
glycolysis V (Pyrococcus) 10 7 1
photorespiration II 10 6 1
superpathway of N-acetylneuraminate degradation 22 14 2
gluconeogenesis III 12 10 1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass 26 22 2
gluconeogenesis I 13 11 1
formaldehyde assimilation I (serine pathway) 13 6 1
Bifidobacterium shunt 15 11 1
glycerol degradation to butanol 16 10 1
superpathway of glucose and xylose degradation 17 16 1
heterolactic fermentation 18 13 1
gluconeogenesis II (Methanobacterium thermoautotrophicum) 18 9 1
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle 22 18 1
ethene biosynthesis V (engineered) 25 17 1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered) 26 16 1
1-butanol autotrophic biosynthesis (engineered) 27 18 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 19 1