Experiment set2S19 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Hypoxanthine 0.7347 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS02325 -3.0 -2.1 23S ribosomal RNA compare
A4249_RS16085 -2.9 -2.8 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS10990 -2.2 -2.6 ATP-dependent protease ATPase subunit HslU compare
A4249_RS07995 -2.1 -2.1 type II 3-dehydroquinate dehydratase compare
A4249_RS04485 -1.9 -1.5 phage holin family protein compare
A4249_RS16710 -1.8 -2.9 hypothetical protein compare
A4249_RS06985 -1.7 -1.5 hypothetical protein compare
A4249_RS06370 -1.7 -2.2 hypothetical protein compare
A4249_RS01230 -1.7 -1.9 hypothetical protein compare
A4249_RS10360 -1.7 -2.0 HAMP domain-containing sensor histidine kinase compare
A4249_RS01590 -1.6 -1.8 site-specific DNA-methyltransferase compare
A4249_RS11720 -1.6 -1.0 strawberry notch C-terminal domain-containing protein compare
A4249_RS05900 -1.4 -2.2 hypothetical protein compare
A4249_RS08855 -1.3 -2.5 L,D-transpeptidase family protein compare
A4249_RS04085 -1.3 -2.5 ribonuclease E/G compare
A4249_RS13195 -1.3 -3.5 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS12260 -1.3 -1.9 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS01650 -1.3 -1.3 DUF1289 domain-containing protein compare
A4249_RS09255 -1.2 -0.8 phosphoribosylamine--glycine ligase compare
A4249_RS07105 -1.2 -1.2 hypothetical protein compare
A4249_RS15225 -1.2 -1.6 flagellar biosynthesis protein FliQ compare
A4249_RS02645 -1.2 -1.4 cobalamin biosynthesis protein CbiG compare
A4249_RS08535 -1.2 -1.6 flagellar assembly protein FliX compare
A4249_RS10160 -1.1 -2.5 HK97 family phage prohead protease compare
A4249_RS08510 -1.1 -2.4 hypothetical protein compare
A4249_RS10125 -1.1 -0.8 phage major tail protein, TP901-1 family compare
A4249_RS06525 -1.0 -1.2 SCP2 sterol-binding domain-containing protein compare
A4249_RS10790 -1.0 -2.4 RNA polymerase sigma factor compare
A4249_RS04490 -1.0 -1.7 cobaltochelatase subunit CobS compare
A4249_RS06465 -1.0 -1.8 hypothetical protein compare
A4249_RS10390 -0.9 -1.4 translation elongation factor 4 compare
A4249_RS06580 -0.9 -2.3 HWE histidine kinase domain-containing protein compare
A4249_RS12210 -0.9 -1.7 tyrosine recombinase XerC compare
A4249_RS13640 -0.9 -1.6 molecular chaperone DnaJ compare
A4249_RS08285 -0.9 -1.5 preQ(1) synthase compare
A4249_RS15560 -0.9 -1.6 response regulator compare
A4249_RS01615 -0.8 -1.9 GNAT family N-acetyltransferase compare
A4249_RS13190 -0.8 -2.0 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS14605 -0.8 -2.9 glycosyltransferase family 2 protein compare
A4249_RS04140 -0.8 -1.8 chemotaxis protein CheE compare
A4249_RS05300 -0.8 -1.3 hypothetical protein compare
A4249_RS16565 -0.8 -1.5 hypothetical protein compare
A4249_RS07900 -0.7 -2.2 Do family serine endopeptidase compare
A4249_RS13200 -0.7 -1.5 thiamine pyrophosphate-dependent enzyme compare
A4249_RS06230 -0.7 -1.1 OmpH family outer membrane protein compare
A4249_RS12400 -0.7 -0.8 hypothetical protein compare
A4249_RS07665 -0.7 -1.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS09275 -0.7 -2.5 DUF3035 domain-containing protein compare
A4249_RS14825 -0.7 -2.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS06880 -0.7 -0.8 hypothetical protein compare
A4249_RS14840 -0.7 -2.4 carboxynorspermidine decarboxylase compare
A4249_RS04995 -0.7 -1.4 DUF2171 domain-containing protein compare
A4249_RS06180 -0.7 -1.9 transcriptional repressor LexA compare
A4249_RS02260 -0.6 -2.2 cation:proton antiporter compare
A4249_RS09350 -0.6 -1.2 PGPGW domain-containing protein compare
A4249_RS06680 -0.6 -1.0 tipN compare
A4249_RS11930 -0.6 -1.2 YcxB family protein compare
A4249_RS09800 -0.6 -2.1 DUF3253 domain-containing protein compare
A4249_RS13745 -0.6 -2.7 DUF3576 domain-containing protein compare
A4249_RS12225 -0.6 -1.0 SDR family oxidoreductase compare
A4249_RS15055 -0.6 -1.7 SprT family zinc-dependent metalloprotease compare
A4249_RS06165 -0.6 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS10200 -0.6 -1.9 YcgN family cysteine cluster protein compare
A4249_RS03570 -0.6 -1.4 TonB family protein compare
A4249_RS13175 -0.6 -1.0 Rrf2 family transcriptional regulator compare
A4249_RS14985 -0.6 -1.5 DHA2 family efflux MFS transporter permease subunit compare
A4249_RS06075 -0.6 -1.0 flagellar motor protein MotB compare
A4249_RS05375 -0.6 -2.6 damage-inducible protein compare
A4249_RS15050 -0.5 -2.0 lysozyme inhibitor LprI family protein compare
A4249_RS06780 -0.5 -0.9 YicC family protein compare
A4249_RS00225 -0.5 -2.2 TetR family transcriptional regulator compare
A4249_RS00145 -0.5 -0.7 SURF1 family protein compare
A4249_RS02780 -0.5 -1.3 DMT family transporter compare
A4249_RS07470 -0.5 -0.7 hypothetical protein compare
A4249_RS10965 -0.5 -0.7 response regulator compare
A4249_RS04020 -0.5 -0.8 energy transducer TonB compare
A4249_RS06435 -0.5 -0.7 tRNA-Asp compare
A4249_RS14780 -0.5 -2.8 NepR family anti-sigma factor compare
A4249_RS14895 -0.5 -1.1 phosphonate ABC transporter, permease protein PhnE compare
A4249_RS01220 -0.5 -0.9 hypothetical protein compare
A4249_RS12365 -0.5 -1.9 D-glycerate dehydrogenase compare
A4249_RS14900 -0.5 -2.4 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS11125 -0.5 -3.7 glycosyltransferase family 9 protein compare
A4249_RS10110 -0.5 -1.1 DUF805 domain-containing protein compare
A4249_RS16950 -0.5 -0.9 flavin reductase family protein compare
A4249_RS15345 -0.5 -1.7 DUF6491 family protein compare
A4249_RS06620 -0.5 -2.7 N-formylglutamate deformylase compare
A4249_RS01555 -0.5 -1.0 response regulator compare
A4249_RS15110 -0.5 -1.3 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS13180 -0.5 -1.1 SDR family oxidoreductase compare
A4249_RS07000 -0.5 -1.9 hypothetical protein compare
A4249_RS00140 -0.5 -1.9 DUF983 domain-containing protein compare
A4249_RS04060 -0.5 -1.0 ABC transporter ATP-binding protein compare
A4249_RS12340 -0.5 -1.1 tRNA pseudouridine(38-40) synthase TruA compare
A4249_RS14835 -0.5 -2.1 S41 family peptidase compare
A4249_RS10815 -0.5 -1.2 Do family serine endopeptidase compare
A4249_RS04635 -0.5 -4.1 cyclic nucleotide-binding domain-containing protein compare
A4249_RS04215 -0.5 -0.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS10820 -0.5 -0.6 cytochrome c-type biogenesis protein CcmH compare
A4249_RS09605 -0.5 -0.8 DUF6468 domain-containing protein compare
A4249_RS13590 -0.5 -2.2 [protein-PII] uridylyltransferase compare
A4249_RS04190 -0.5 -1.2 MliC family protein compare
A4249_RS09445 -0.5 -1.1 SdpI family protein compare
A4249_RS05620 -0.5 -2.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS04475 -0.5 -0.9 response regulator transcription factor compare
A4249_RS06655 -0.5 -2.1 TPM domain-containing protein compare
A4249_RS04080 -0.5 -1.5 M48 family metalloprotease compare
A4249_RS12055 -0.5 -1.5 anthranilate synthase component I family protein compare
A4249_RS13610 -0.5 -1.7 NAD(P)/FAD-dependent oxidoreductase compare
A4249_RS14740 -0.5 -1.3 NifU family protein compare
A4249_RS02820 -0.5 -0.7 Ppx/GppA phosphatase family protein compare
A4249_RS15645 -0.5 -1.0 potassium-transporting ATPase subunit KdpB compare
A4249_RS01290 -0.4 -2.3 S49 family peptidase compare
A4249_RS08885 -0.4 -1.0 DUF465 domain-containing protein compare
A4249_RS11285 -0.4 -1.1 double-strand break repair protein AddB compare
A4249_RS08905 -0.4 -0.6 M23 family metallopeptidase compare
A4249_RS03125 -0.4 -1.1 class I SAM-dependent methyltransferase compare
A4249_RS12330 -0.4 -1.4 hypothetical protein compare
A4249_RS10430 -0.4 -2.0 S1/P1 Nuclease compare
A4249_RS13570 -0.4 -1.4 DUF1178 family protein compare
A4249_RS10000 -0.4 -1.6 3-isopropylmalate dehydratase small subunit compare
A4249_RS09285 -0.4 -1.3 Tat pathway signal sequence domain protein compare
A4249_RS14715 -0.4 -1.9 PhoH family protein compare
A4249_RS06445 -0.4 -3.2 autotransporter outer membrane beta-barrel domain-containing protein compare
A4249_RS16520 -0.4 -1.7 hypothetical protein compare
A4249_RS03590 -0.4 -3.5 enoyl-CoA hydratase/isomerase family protein compare
A4249_RS07125 -0.4 -1.5 hypothetical protein compare
A4249_RS00640 -0.4 -1.7 cell wall hydrolase compare
A4249_RS00605 -0.4 -0.7 host attachment protein compare
A4249_RS06990 -0.4 -1.5 MT-A70 family methyltransferase compare
A4249_RS02635 -0.4 -0.7 RNA polymerase sigma factor compare
A4249_RS13125 -0.4 -0.9 ribonuclease PH compare
A4249_RS16365 -0.4 -1.7 DUF393 domain-containing protein compare
A4249_RS13060 -0.4 -2.9 AGE family epimerase/isomerase compare
A4249_RS10100 -0.4 -1.2 DUF2163 domain-containing protein compare
A4249_RS01310 -0.4 -1.6 hypothetical protein compare
A4249_RS04350 -0.4 -0.9 lipopolysaccharide biosynthesis protein compare
A4249_RS02395 -0.4 -1.3 FecR domain-containing protein compare
A4249_RS03175 -0.4 -1.1 ParB N-terminal domain-containing protein compare
A4249_RS00050 -0.4 -0.5 type 1 glutamine amidotransferase compare
A4249_RS03675 -0.4 -1.7 DUF2188 domain-containing protein compare
A4249_RS07875 -0.4 -1.6 hypothetical protein compare
A4249_RS01760 -0.4 -1.4 DUF2924 domain-containing protein compare
A4249_RS09115 -0.4 -0.8 sigma-54 dependent transcriptional regulator compare
A4249_RS12830 -0.4 -0.8 YkvA family protein compare
A4249_RS15230 -0.4 -1.5 flagellar biosynthetic protein FliR compare
A4249_RS02975 -0.4 -1.1 oligosaccharide flippase family protein compare
A4249_RS13970 -0.4 -1.1 amidohydrolase family protein compare
A4249_RS09785 -0.4 -2.1 flagellar basal-body MS-ring/collar protein FliF compare
A4249_RS01275 -0.4 -1.6 hypothetical protein compare
A4249_RS06665 -0.4 -0.6 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS06325 -0.4 -1.0 ribonuclease J compare
A4249_RS13575 -0.4 -1.7 GNAT family N-acetyltransferase compare
A4249_RS12650 -0.4 -1.9 LLM class flavin-dependent oxidoreductase compare
A4249_RS02620 -0.3 -1.8 DNA repair protein RecN compare
A4249_RS01645 -0.3 -1.4 crotonase/enoyl-CoA hydratase family protein compare
A4249_RS05595 -0.3 -0.9 dicarboxylate/amino acid:cation symporter compare
A4249_RS08495 -0.3 -0.5 Na+/H+ antiporter subunit E compare
A4249_RS00855 -0.3 -0.7 hypothetical protein compare
A4249_RS14165 -0.3 -0.6 prolyl-tRNA synthetase associated domain-containing protein compare
A4249_RS08185 -0.3 -1.7 YciI family protein compare
A4249_RS05155 -0.3 -1.5 CHASE3 domain-containing protein compare
A4249_RS04390 -0.3 -1.4 ABC transporter ATP-binding protein compare
A4249_RS08725 -0.3 -1.2 hypothetical protein compare
A4249_RS13560 -0.3 -0.9 glutaredoxin 3 compare
A4249_RS14380 -0.3 -1.0 YnbE family lipoprotein compare
A4249_RS04450 -0.3 -0.8 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS03170 -0.3 -0.6 hypothetical protein compare
A4249_RS10275 -0.3 -1.4 Lrp/AsnC family transcriptional regulator compare
A4249_RS04765 -0.3 -1.2 ATP-dependent DNA helicase RecG compare
A4249_RS07830 -0.3 -1.1 FAD-binding oxidoreductase compare
A4249_RS03020 -0.3 -1.7 DUF2061 domain-containing protein compare
A4249_RS16265 -0.3 -0.7 helix-turn-helix domain-containing protein compare
A4249_RS12220 -0.3 -1.6 retroviral-like aspartic protease family protein compare
A4249_RS10915 -0.3 -0.9 hypothetical protein compare
A4249_RS07335 -0.3 -1.2 peptide-methionine (R)-S-oxide reductase MsrB compare
A4249_RS02550 -0.3 -1.9 dipeptidase compare
A4249_RS14390 -0.3 -1.4 DNA cytosine methyltransferase compare
A4249_RS09165 -0.3 -1.5 aldo/keto reductase compare
A4249_RS08545 -0.3 -1.5 rod-binding protein compare
A4249_RS06855 -0.3 -1.1 hypothetical protein compare
A4249_RS04240 -0.3 -1.5 DNA-processing protein DprA compare
A4249_RS16440 -0.3 -1.9 hypothetical protein compare
A4249_RS12635 -0.3 -1.1 phosphatase PAP2 family protein compare
A4249_RS03810 -0.3 -2.5 biotin carboxylase N-terminal domain-containing protein compare
A4249_RS07090 -0.3 -0.8 hypothetical protein compare
A4249_RS03095 -0.3 -2.2 dihydrolipoyl dehydrogenase compare
A4249_RS11325 -0.3 -1.5 hypothetical protein compare
A4249_RS05625 -0.3 -2.7 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS14950 -0.3 -0.7 ParD-like family protein compare
A4249_RS01075 -0.3 -1.0 DNA-binding domain-containing protein compare
A4249_RS13370 -0.3 -2.2 NAD(P)/FAD-dependent oxidoreductase compare
A4249_RS14865 -0.3 -2.0 glutathione S-transferase N-terminal domain-containing protein compare
A4249_RS06550 -0.3 -1.1 chorismate mutase compare
A4249_RS13220 -0.3 -0.8 monofunctional biosynthetic peptidoglycan transglycosylase compare
A4249_RS01040 -0.3 -2.2 hypothetical protein compare
A4249_RS15800 -0.3 -1.4 thioesterase family protein compare
A4249_RS07185 -0.3 -1.5 hypothetical protein compare
A4249_RS15845 -0.3 -1.5 hemerythrin domain-containing protein compare
A4249_RS00860 -0.3 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Hypoxanthine across organisms