Experiment set2S18 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Guanine 0.6617 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS16085 -2.0 -2.2 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS12225 -1.7 -1.7 SDR family oxidoreductase compare
A4249_RS01590 -1.7 -2.4 site-specific DNA-methyltransferase compare
A4249_RS06665 -1.5 -2.3 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS10390 -1.3 -2.3 translation elongation factor 4 compare
A4249_RS01460 -1.2 -2.1 signal peptide peptidase SppA compare
A4249_RS09405 -1.2 -2.4 beta-N-acetylhexosaminidase compare
A4249_RS17085 -1.0 -1.7 sugar O-acetyltransferase compare
A4249_RS06525 -1.0 -1.2 SCP2 sterol-binding domain-containing protein compare
A4249_RS01190 -1.0 -2.5 hypothetical protein compare
A4249_RS03190 -1.0 -2.7 ATPase, T2SS/T4P/T4SS family compare
A4249_RS07060 -0.9 -1.2 single-stranded DNA-binding protein compare
A4249_RS16765 -0.9 -1.6 hypothetical protein compare
A4249_RS01615 -0.9 -2.6 GNAT family N-acetyltransferase compare
A4249_RS11720 -0.8 -1.3 strawberry notch C-terminal domain-containing protein compare
A4249_RS13125 -0.8 -1.5 ribonuclease PH compare
A4249_RS16585 -0.8 -1.5 hypothetical protein compare
A4249_RS08495 -0.8 -1.0 Na+/H+ antiporter subunit E compare
A4249_RS04475 -0.8 -1.5 response regulator transcription factor compare
A4249_RS14905 -0.8 -1.6 phosphonate ABC transporter ATP-binding protein compare
A4249_RS07320 -0.8 -2.0 hypothetical protein compare
A4249_RS06180 -0.8 -2.9 transcriptional repressor LexA compare
A4249_RS04060 -0.7 -3.0 ABC transporter ATP-binding protein compare
A4249_RS01415 -0.7 -1.2 phage Gp37/Gp68 family protein compare
A4249_RS13180 -0.7 -1.9 SDR family oxidoreductase compare
A4249_RS13760 -0.7 -1.2 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS07290 -0.7 -1.6 ribonuclease E/G compare
A4249_RS08885 -0.7 -1.9 DUF465 domain-containing protein compare
A4249_RS13345 -0.7 -2.2 tRNA pseudouridine(55) synthase TruB compare
A4249_RS01235 -0.7 -0.7 hypothetical protein compare
A4249_RS14875 -0.7 -2.3 benzoate/H(+) symporter BenE family transporter compare
A4249_RS15055 -0.7 -2.0 SprT family zinc-dependent metalloprotease compare
A4249_RS11780 -0.7 -0.8 hypothetical protein compare
A4249_RS07995 -0.6 -1.1 type II 3-dehydroquinate dehydratase compare
A4249_RS05730 -0.6 -2.5 uracil-DNA glycosylase compare
A4249_RS12795 -0.6 -1.1 DsbE family thiol:disulfide interchange protein compare
A4249_RS14165 -0.6 -2.0 prolyl-tRNA synthetase associated domain-containing protein compare
A4249_RS00310 -0.6 -3.0 acetoacetyl-CoA reductase compare
A4249_RS04490 -0.6 -1.4 cobaltochelatase subunit CobS compare
A4249_RS05620 -0.6 -2.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS14445 -0.6 -1.3 hypothetical protein compare
A4249_RS10430 -0.6 -3.1 S1/P1 Nuclease compare
A4249_RS16425 -0.6 -0.5 hypothetical protein compare
A4249_RS15050 -0.5 -2.2 lysozyme inhibitor LprI family protein compare
A4249_RS10815 -0.5 -1.4 Do family serine endopeptidase compare
A4249_RS03060 -0.5 -1.3 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS08510 -0.5 -1.7 hypothetical protein compare
A4249_RS10110 -0.5 -0.9 DUF805 domain-containing protein compare
A4249_RS02650 -0.5 -0.9 hypothetical protein compare
A4249_RS06465 -0.5 -1.1 hypothetical protein compare
A4249_RS13060 -0.5 -4.1 AGE family epimerase/isomerase compare
A4249_RS11125 -0.5 -4.1 glycosyltransferase family 9 protein compare
A4249_RS04215 -0.5 -1.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS04845 -0.5 -3.2 HAD-IA family hydrolase compare
A4249_RS16940 -0.5 -1.8 GIY-YIG nuclease family protein compare
A4249_RS07145 -0.5 -1.0 hypothetical protein compare
A4249_RS02645 -0.5 -0.9 cobalamin biosynthesis protein CbiG compare
A4249_RS16615 -0.5 -1.5 hypothetical protein compare
A4249_RS15660 -0.5 -1.6 hypothetical protein compare
A4249_RS00830 -0.5 -1.9 hypothetical protein compare
A4249_RS13395 -0.5 -1.9 DUF2939 domain-containing protein compare
A4249_RS15570 -0.5 -1.6 chemotaxis protein CheW compare
A4249_RS04565 -0.5 -1.5 Rrf2 family transcriptional regulator compare
A4249_RS07405 -0.5 -1.8 hypothetical protein compare
A4249_RS05885 -0.5 -2.2 cold-shock protein compare
A4249_RS16935 -0.5 -1.0 Plug domain-containing protein compare
A4249_RS13560 -0.5 -1.4 glutaredoxin 3 compare
A4249_RS00855 -0.4 -1.7 hypothetical protein compare
A4249_RS13590 -0.4 -2.4 [protein-PII] uridylyltransferase compare
A4249_RS12970 -0.4 -1.5 glycosyltransferase family 61 protein compare
A4249_RS12260 -0.4 -1.0 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS04085 -0.4 -1.2 ribonuclease E/G compare
A4249_RS07200 -0.4 -1.5 hypothetical protein compare
A4249_RS13070 -0.4 -3.2 phosphomannomutase/phosphoglucomutase compare
A4249_RS06155 -0.4 -1.9 anthranilate synthase component I compare
A4249_RS02825 -0.4 -1.9 heat shock protein HspQ compare
A4249_RS14205 -0.4 -1.0 response regulator compare
A4249_RS05590 -0.4 -1.5 amino acid ABC transporter substrate-binding protein compare
A4249_RS08760 -0.4 -2.1 hypothetical protein compare
A4249_RS09725 -0.4 -1.1 hypothetical protein compare
A4249_RS01285 -0.4 -1.8 head decoration protein compare
A4249_RS14155 -0.4 -1.9 thioredoxin compare
A4249_RS14840 -0.4 -1.7 carboxynorspermidine decarboxylase compare
A4249_RS10245 -0.4 -1.7 MucR family transcriptional regulator compare
A4249_RS13030 -0.4 -2.7 glycosyltransferase family 1 protein compare
A4249_RS11575 -0.4 -1.0 YeeE/YedE family protein compare
A4249_RS00260 -0.4 -1.3 YqgE/AlgH family protein compare
A4249_RS11905 -0.4 -1.4 hypothetical protein compare
A4249_RS05370 -0.4 -1.8 DNA polymerase Y family protein compare
A4249_RS06990 -0.4 -2.0 MT-A70 family methyltransferase compare
A4249_RS11930 -0.4 -1.4 YcxB family protein compare
A4249_RS12330 -0.4 -2.0 hypothetical protein compare
A4249_RS04995 -0.4 -0.9 DUF2171 domain-containing protein compare
A4249_RS02300 -0.4 -1.4 rhomboid family intramembrane serine protease compare
A4249_RS12980 -0.4 -3.3 GDP-mannose 4,6-dehydratase compare
A4249_RS14025 -0.4 -0.7 CHAP domain-containing protein compare
A4249_RS01275 -0.4 -0.9 hypothetical protein compare
A4249_RS12830 -0.4 -0.9 YkvA family protein compare
A4249_RS07870 -0.4 -2.2 fluoride efflux transporter CrcB compare
A4249_RS08905 -0.4 -1.0 M23 family metallopeptidase compare
A4249_RS02685 -0.4 -1.9 CoA pyrophosphatase compare
A4249_RS09840 -0.4 -1.5 pyrroline-5-carboxylate reductase dimerization domain-containing protein compare
A4249_RS02680 -0.4 -1.8 DUF1285 domain-containing protein compare
A4249_RS09350 -0.4 -1.1 PGPGW domain-containing protein compare
A4249_RS08720 -0.4 -1.6 PaaI family thioesterase compare
A4249_RS05155 -0.4 -1.3 CHASE3 domain-containing protein compare
A4249_RS05790 -0.4 -1.5 transmembrane anchor protein compare
A4249_RS09075 -0.4 -1.0 hypothetical protein compare
A4249_RS01220 -0.3 -1.2 hypothetical protein compare
A4249_RS08640 -0.3 -1.2 DUF1153 domain-containing protein compare
A4249_RS15485 -0.3 -1.5 biliverdin-producing heme oxygenase compare
A4249_RS03065 -0.3 -0.9 arsenate reductase (glutaredoxin) compare
A4249_RS12015 -0.3 -1.9 CpaD family pilus assembly protein compare
A4249_RS09465 -0.3 -1.6 prephenate dehydrogenase compare
A4249_RS13020 -0.3 -2.0 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS13165 -0.3 -1.5 RsmB/NOP family class I SAM-dependent RNA methyltransferase compare
A4249_RS14900 -0.3 -2.0 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS12390 -0.3 -1.2 ATP-dependent protease subunit HslV compare
A4249_RS06930 -0.3 -0.7 SOS response-associated peptidase family protein compare
A4249_RS08745 -0.3 -1.4 hypothetical protein compare
A4249_RS14700 -0.3 -1.0 helix-turn-helix transcriptional regulator compare
A4249_RS07610 -0.3 -0.6 methyltransferase type 11 compare
A4249_RS09055 -0.3 -0.8 hypothetical protein compare
A4249_RS14825 -0.3 -1.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS09210 -0.3 -0.6 hypothetical protein compare
A4249_RS01100 -0.3 -1.6 MBL fold metallo-hydrolase compare
A4249_RS02510 -0.3 -1.5 L-threonine 3-dehydrogenase compare
A4249_RS04080 -0.3 -1.2 M48 family metalloprotease compare
A4249_RS00895 -0.3 -0.6 DUF1476 domain-containing protein compare
A4249_RS07025 -0.3 -1.6 hypothetical protein compare
A4249_RS10035 -0.3 -1.4 hypothetical protein compare
A4249_RS05405 -0.3 -1.2 hypothetical protein compare
A4249_RS11740 -0.3 -1.8 isoprenylcysteine carboxylmethyltransferase family protein compare
A4249_RS07170 -0.3 -1.6 hypothetical protein compare
A4249_RS11185 -0.3 -1.3 exopolysaccharide biosynthesis protein compare
A4249_RS13330 -0.3 -1.6 hypothetical protein compare
A4249_RS09600 -0.3 -1.5 hypothetical protein compare
A4249_RS15345 -0.3 -0.9 DUF6491 family protein compare
A4249_RS00180 -0.3 -0.7 hypothetical protein compare
A4249_RS01090 -0.3 -1.1 sigma-70 family RNA polymerase sigma factor compare
A4249_RS10360 -0.3 -0.5 HAMP domain-containing sensor histidine kinase compare
A4249_RS00060 -0.3 -1.0 fatty acid desaturase compare
A4249_RS12030 -0.3 -1.3 prepilin peptidase compare
A4249_RS13045 -0.3 -2.4 glycosyltransferase family 1 protein compare
A4249_RS11495 -0.3 -1.8 response regulator transcription factor compare
A4249_RS04345 -0.3 -1.2 glycosyltransferase family A protein compare
A4249_RS13025 -0.3 -2.4 hypothetical protein compare
A4249_RS14625 -0.3 -0.7 hypothetical protein compare
A4249_RS00145 -0.3 -0.6 SURF1 family protein compare
A4249_RS00265 -0.3 -0.9 peroxiredoxin compare
A4249_RS08560 -0.3 -1.9 ABC-F family ATP-binding cassette domain-containing protein compare
A4249_RS06550 -0.3 -0.8 chorismate mutase compare
A4249_RS07190 -0.3 -1.3 hypothetical protein compare
A4249_RS04220 -0.3 -0.8 low molecular weight phosphotyrosine protein phosphatase compare
A4249_RS07205 -0.3 -2.3 hypothetical protein compare
A4249_RS01290 -0.3 -1.8 S49 family peptidase compare
A4249_RS10320 -0.3 -0.7 HAMP domain-containing sensor histidine kinase compare
A4249_RS12025 -0.3 -1.5 Flp pilus assembly protein CpaB compare
A4249_RS03390 -0.3 -2.2 IS3 family transposase compare
A4249_RS12045 -0.3 -1.4 TadE/TadG family type IV pilus assembly protein compare
A4249_RS12170 -0.3 -1.4 hypothetical protein compare
A4249_RS06230 -0.3 -0.4 OmpH family outer membrane protein compare
A4249_RS01355 -0.3 -0.7 hypothetical protein compare
A4249_RS15590 -0.3 -1.5 chemotaxis protein CheD compare
A4249_RS03480 -0.3 -1.9 SRPBCC family protein compare
A4249_RS10345 -0.3 -1.8 hypothetical protein compare
A4249_RS12880 -0.3 -1.5 DUF2794 domain-containing protein compare
A4249_RS04635 -0.3 -2.4 cyclic nucleotide-binding domain-containing protein compare
A4249_RS15360 -0.3 -0.7 DNA replication/repair protein RecF compare
A4249_RS10975 -0.3 -1.6 DUF599 family protein compare
A4249_RS10370 -0.3 -1.5 hypothetical protein compare
A4249_RS08785 -0.3 -0.9 DnaJ C-terminal domain-containing protein compare
A4249_RS01135 -0.3 -1.1 DsbA family protein compare
A4249_RS05625 -0.3 -2.2 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS09815 -0.3 -1.4 nucleoside transporter C-terminal domain-containing protein compare
A4249_RS13035 -0.3 -1.6 hypothetical protein compare
A4249_RS16460 -0.3 -0.7 hypothetical protein compare
A4249_RS08500 -0.3 -1.1 K+/H+ antiporter subunit F compare
A4249_RS00925 -0.3 -0.6 multidrug efflux SMR transporter compare
A4249_RS10185 -0.3 -1.7 hypothetical protein compare
A4249_RS11505 -0.3 -1.6 TlpA disulfide reductase family protein compare
A4249_RS05550 -0.3 -1.8 nuclear transport factor 2 family protein compare
A4249_RS07185 -0.3 -1.0 hypothetical protein compare
A4249_RS16630 -0.3 -0.8 DUF2474 family protein compare
A4249_RS06780 -0.3 -0.5 YicC family protein compare
A4249_RS11995 -0.3 -2.0 type II secretion system F family protein compare
A4249_RS10660 -0.3 -1.6 peptidase compare
A4249_RS04130 -0.3 -1.6 beta-eliminating lyase-related protein compare
A4249_RS07140 -0.3 -1.8 hypothetical protein compare
A4249_RS01010 -0.3 -1.6 capsular polysaccharide biosynthesis protein compare
A4249_RS11785 -0.3 -1.5 single-stranded DNA-binding protein compare
A4249_RS16800 -0.3 -1.0 hypothetical protein compare
A4249_RS13450 -0.3 -0.6 PilZ domain-containing protein compare
A4249_RS13855 -0.3 -1.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
A4249_RS12445 -0.3 -1.7 radical SAM family heme chaperone HemW compare
A4249_RS07180 -0.3 -1.7 hypothetical protein compare
A4249_RS06125 -0.3 -1.5 hypothetical protein compare
A4249_RS14985 -0.2 -0.8 DHA2 family efflux MFS transporter permease subunit compare
A4249_RS16725 -0.2 -0.7 hypothetical protein compare
A4249_RS10715 -0.2 -1.8 imidazole glycerol phosphate synthase subunit HisF compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Guanine across organisms