Experiment set2S170 for Rhodanobacter sp000427505 FW510-R12

Compare to:

Planktonic; Day2; SGW; pH7

200 most important genes:

  gene name fitness t score description  
LRK53_RS04445 -3.3 -2.2 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS06670 -3.2 -2.2 RIP metalloprotease RseP compare
LRK53_RS17865 -3.0 -2.9 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS14840 -2.9 -2.8 trypsin-like peptidase domain-containing protein compare
LRK53_RS04390 -2.7 -4.1 glycosyltransferase family 2 protein compare
LRK53_RS11300 -2.5 -6.1 polysaccharide biosynthesis protein compare
LRK53_RS15755 -2.4 -2.9 SDR family oxidoreductase compare
LRK53_RS07020 -2.4 -3.7 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS03715 -2.2 -1.7 cell division ATP-binding protein FtsE compare
LRK53_RS11185 -2.1 -1.2 DUF4115 domain-containing protein compare
LRK53_RS11805 -2.0 -2.8 heavy metal translocating P-type ATPase compare
LRK53_RS15820 -2.0 -1.2 metal/formaldehyde-sensitive transcriptional repressor compare
LRK53_RS09435 -2.0 -2.3 malate dehydrogenase compare
LRK53_RS13070 -2.0 -3.5 OsmC family protein compare
LRK53_RS14400 -1.9 -1.3 TetR family transcriptional regulator compare
LRK53_RS05905 -1.9 -2.5 thymidylate synthase compare
LRK53_RS14110 -1.8 -2.7 GNAT family N-acetyltransferase compare
LRK53_RS11795 -1.8 -2.7 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS11035 -1.7 -2.0 major capsid protein compare
LRK53_RS11285 -1.7 -2.1 tRNA-binding protein compare
LRK53_RS19140 -1.6 -1.8 hypothetical protein compare
LRK53_RS16675 -1.6 -3.0 DUF58 domain-containing protein compare
LRK53_RS05045 -1.6 -1.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK53_RS17340 -1.5 -2.6 arginase compare
LRK53_RS13415 -1.5 -2.4 DUF2059 domain-containing protein compare
LRK53_RS11025 -1.5 -2.2 hypothetical protein compare
LRK53_RS16035 -1.4 -2.5 hypothetical protein compare
LRK53_RS06545 -1.4 -4.0 TIGR02099 family protein compare
LRK53_RS01585 -1.4 -3.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS17150 -1.4 -4.3 ferredoxin family protein compare
LRK53_RS00755 -1.3 -4.3 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS11140 -1.3 -2.0 hypothetical protein compare
LRK53_RS07300 -1.3 -3.2 DEAD/DEAH box helicase compare
LRK53_RS05685 -1.3 -9.7 type IV pilus twitching motility protein PilT compare
LRK53_RS02815 -1.3 -2.0 DmsE family decaheme c-type cytochrome compare
LRK53_RS00565 -1.3 -1.7 ATP-binding protein compare
LRK53_RS16160 -1.3 -3.8 hypothetical protein compare
LRK53_RS04815 -1.2 -2.8 IS5 family transposase compare
LRK53_RS18825 -1.2 -2.3 hypothetical protein compare
LRK53_RS15060 -1.2 -1.1 flagellar export protein FliJ compare
LRK53_RS03720 -1.2 -4.9 permease-like cell division protein FtsX compare
LRK53_RS01570 -1.2 -2.0 DNA polymerase I compare
LRK53_RS17625 -1.2 -1.7 benenodin family lasso peptide compare
LRK53_RS14435 -1.1 -2.6 hypothetical protein compare
LRK53_RS12740 -1.1 -2.4 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS17785 -1.1 -3.5 septal ring lytic transglycosylase RlpA family protein compare
LRK53_RS11620 -1.1 -1.5 hypothetical protein compare
LRK53_RS14215 -1.1 -3.2 hypothetical protein compare
LRK53_RS00395 -1.1 -2.1 SDR family oxidoreductase compare
LRK53_RS14060 -1.1 -3.4 DUF423 domain-containing protein compare
LRK53_RS16730 -1.1 -1.9 nucleoside hydrolase compare
LRK53_RS04505 -1.1 -2.1 met regulon transcriptional regulator MetJ compare
LRK53_RS16995 -1.1 -1.0 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS13695 -1.1 -1.2 response regulator compare
LRK53_RS09170 -1.0 -2.0 cupin domain-containing protein compare
LRK53_RS01830 -1.0 -1.5 hypothetical protein compare
LRK53_RS15625 -1.0 -5.0 hemolysin family protein compare
LRK53_RS15195 -1.0 -3.8 flagellar biosynthesis anti-sigma factor FlgM compare
LRK53_RS14055 -1.0 -2.3 hypothetical protein compare
LRK53_RS11420 -1.0 -3.2 outer membrane protein assembly factor BamE compare
LRK53_RS08350 -1.0 -2.7 tryptophan synthase subunit beta compare
LRK53_RS13770 -1.0 -2.3 protease HtpX compare
LRK53_RS12285 -1.0 -1.8 magnesium transporter compare
LRK53_RS14010 -1.0 -2.2 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS13625 -1.0 -2.1 carbon storage regulator CsrA compare
LRK53_RS17895 -1.0 -0.8 phosphomannomutase/phosphoglucomutase compare
LRK53_RS18995 -0.9 -1.1 hypothetical protein compare
LRK53_RS02285 -0.9 -2.0 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS14925 -0.9 -2.4 chemotaxis protein CheW compare
LRK53_RS12670 -0.9 -3.4 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS08910 -0.9 -2.1 endolytic transglycosylase MltG compare
LRK53_RS05200 -0.9 -1.7 type IV pilus modification protein PilV compare
LRK53_RS11780 -0.9 -3.4 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS16195 -0.9 -3.0 Co2+/Mg2+ efflux protein ApaG compare
LRK53_RS03010 -0.9 -0.6 hypothetical protein compare
LRK53_RS01520 -0.9 -1.9 rhodanese-like domain-containing protein compare
LRK53_RS07920 -0.9 -3.2 homocysteine S-methyltransferase family protein compare
LRK53_RS11105 -0.9 -3.1 hypothetical protein compare
LRK53_RS14800 -0.8 -4.0 DUF1631 domain-containing protein compare
LRK53_RS18130 -0.8 -2.1 lytic transglycosylase domain-containing protein compare
LRK53_RS03690 -0.8 -1.7 dihydroorotase compare
LRK53_RS17500 -0.8 -2.0 YciI family protein compare
LRK53_RS16505 -0.8 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK53_RS08430 -0.8 -1.2 30S ribosomal protein THX compare
LRK53_RS14520 -0.8 -1.0 GNAT family N-acetyltransferase compare
LRK53_RS01530 -0.8 -0.6 YiiD C-terminal domain-containing protein compare
LRK53_RS17345 -0.8 -3.1 hypothetical protein compare
LRK53_RS04100 -0.8 -1.5 DUF3247 family protein compare
LRK53_RS18045 -0.8 -1.6 DUF6429 family protein compare
LRK53_RS00940 -0.8 -0.8 hypothetical protein compare
LRK53_RS09460 -0.8 -2.0 methylisocitrate lyase compare
LRK53_RS02990 -0.8 -0.9 pyridoxal-phosphate dependent enzyme compare
LRK53_RS03730 -0.8 -3.0 uracil-DNA glycosylase compare
LRK53_RS17900 -0.8 -1.1 dUTP diphosphatase compare
LRK53_RS14645 -0.8 -0.9 molybdopterin molybdotransferase MoeA compare
LRK53_RS01140 -0.8 -3.1 complex I NDUFA9 subunit family protein compare
LRK53_RS07870 -0.8 -2.4 hypothetical protein compare
LRK53_RS07410 -0.8 -1.5 50S ribosomal protein L9 compare
LRK53_RS01745 -0.8 -4.2 TetR/AcrR family transcriptional regulator compare
LRK53_RS00405 -0.8 -1.1 trimeric intracellular cation channel family protein compare
LRK53_RS02280 -0.8 -4.4 hypothetical protein compare
LRK53_RS19110 -0.8 -0.8 hypothetical protein compare
LRK53_RS00415 -0.8 -3.1 DsbA family protein compare
LRK53_RS03725 -0.8 -4.4 response regulator compare
LRK53_RS11265 -0.8 -1.1 hypothetical protein compare
LRK53_RS01505 -0.8 -1.6 hotdog fold thioesterase compare
LRK53_RS07280 -0.8 -1.4 YkgJ family cysteine cluster protein compare
LRK53_RS04200 -0.7 -0.9 hypothetical protein compare
LRK53_RS05560 -0.7 -1.8 threonine/serine exporter family protein compare
LRK53_RS18170 -0.7 -1.6 HAMP domain-containing histidine kinase compare
LRK53_RS02300 -0.7 -2.2 hypothetical protein compare
LRK53_RS05465 -0.7 -2.1 hemin uptake protein HemP compare
LRK53_RS02885 -0.7 -2.4 glycosyltransferase family 2 protein compare
LRK53_RS01145 -0.7 -3.9 transglycosylase SLT domain-containing protein compare
LRK53_RS00440 -0.7 -1.6 hypothetical protein compare
LRK53_RS02135 -0.7 -1.8 hypothetical protein compare
LRK53_RS18025 -0.7 -0.7 hypothetical protein compare
LRK53_RS08425 -0.7 -2.4 cation diffusion facilitator family transporter compare
LRK53_RS07915 -0.7 -3.0 methionine synthase compare
LRK53_RS01335 -0.7 -3.4 bile acid:sodium symporter compare
LRK53_RS06930 -0.7 -1.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS11190 -0.7 -1.4 type IV pilus biogenesis/stability protein PilW compare
LRK53_RS15985 -0.7 -3.0 hypothetical protein compare
LRK53_RS14785 -0.7 -1.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS00680 -0.7 -1.2 GntR family transcriptional regulator compare
LRK53_RS14735 -0.7 -1.2 copper-containing nitrite reductase compare
LRK53_RS06025 -0.7 -2.0 nucleotidyltransferase domain-containing protein compare
LRK53_RS13565 -0.7 -0.6 isocitrate dehydrogenase compare
LRK53_RS15660 -0.7 -2.2 phosphoribosylglycinamide formyltransferase compare
LRK53_RS02140 -0.7 -2.2 hypothetical protein compare
LRK53_RS00690 -0.7 -1.3 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS13795 -0.7 -1.2 cytochrome c compare
LRK53_RS01215 -0.7 -2.6 hypothetical protein compare
LRK53_RS15835 -0.7 -2.5 MAPEG family protein compare
LRK53_RS15870 -0.7 -2.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK53_RS14700 -0.7 -4.6 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK53_RS04690 -0.7 -2.3 cysteine synthase A compare
LRK53_RS15080 -0.7 -2.5 flagellar M-ring protein FliF compare
LRK53_RS18665 -0.7 -2.7 hypothetical protein compare
LRK53_RS01555 -0.7 -3.6 alpha/beta hydrolase compare
LRK53_RS01230 -0.7 -1.3 hypothetical protein compare
LRK53_RS07385 -0.6 -3.5 MalM family protein compare
LRK53_RS00720 -0.6 -1.5 acyloxyacyl hydrolase compare
LRK53_RS03740 -0.6 -4.1 S41 family peptidase compare
LRK53_RS17765 -0.6 -2.1 lipoyl synthase compare
LRK53_RS02740 -0.6 -2.4 type II secretion system major pseudopilin GspG compare
LRK53_RS10975 -0.6 -2.8 hypothetical protein compare
LRK53_RS09875 -0.6 -2.7 BolA family transcriptional regulator compare
LRK53_RS16665 -0.6 -3.1 VWA domain-containing protein compare
LRK53_RS05835 -0.6 -4.3 response regulator transcription factor compare
LRK53_RS00125 -0.6 -1.3 GntR family transcriptional regulator compare
LRK53_RS10255 -0.6 -3.1 catechol 2,3-dioxygenase compare
LRK53_RS01165 -0.6 -4.0 thiol:disulfide interchange protein DsbA/DsbL compare
LRK53_RS01440 -0.6 -2.1 ATP-binding cassette domain-containing protein compare
LRK53_RS01705 -0.6 -2.8 O-antigen ligase family protein compare
LRK53_RS12025 -0.6 -1.0 DUF2058 family protein compare
LRK53_RS18960 -0.6 -0.8 hypothetical protein compare
LRK53_RS13120 -0.6 -2.9 HlyD family secretion protein compare
LRK53_RS17475 -0.6 -2.4 CPXCG motif-containing cysteine-rich protein compare
LRK53_RS16495 -0.6 -1.8 adenosylhomocysteinase compare
LRK53_RS02290 -0.6 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK53_RS13595 -0.6 -2.9 polyphosphate kinase 1 compare
LRK53_RS00110 -0.6 -1.9 PA0069 family radical SAM protein compare
LRK53_RS04590 -0.6 -3.9 TetR/AcrR family transcriptional regulator compare
LRK53_RS02750 -0.6 -2.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
LRK53_RS13115 -0.6 -2.7 DUF1656 domain-containing protein compare
LRK53_RS03050 -0.6 -1.4 ComF family protein compare
LRK53_RS15055 -0.6 -1.5 flagellar hook-length control protein FliK compare
LRK53_RS03620 -0.6 -2.1 ABC transporter permease compare
LRK53_RS03710 -0.6 -4.9 DEAD/DEAH box helicase compare
LRK53_RS07860 -0.6 -2.3 RNA polymerase sigma factor compare
LRK53_RS11230 -0.6 -2.9 hypothetical protein compare
LRK53_RS03545 -0.6 -0.9 DUF2249 domain-containing protein compare
LRK53_RS05075 -0.6 -1.5 DUF3363 domain-containing protein compare
LRK53_RS08205 -0.6 -0.9 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS16570 -0.6 -1.4 Rieske (2Fe-2S) protein compare
LRK53_RS09620 -0.6 -1.9 hypothetical protein compare
LRK53_RS12245 -0.6 -1.0 ribosome assembly RNA-binding protein YhbY compare
LRK53_RS15045 -0.6 -2.3 flagellar motor switch protein FliM compare
LRK53_RS14685 -0.6 -1.4 deoxyribose-phosphate aldolase compare
LRK53_RS14930 -0.6 -3.1 methyl-accepting chemotaxis protein compare
LRK53_RS04850 -0.6 -1.3 transposase compare
LRK53_RS03775 -0.6 -1.7 DUF938 domain-containing protein compare
LRK53_RS14455 -0.6 -0.7 ATP-binding protein compare
LRK53_RS17455 -0.6 -3.1 cardiolipin synthase compare
LRK53_RS00015 -0.6 -2.2 DNA replication/repair protein RecF compare
LRK53_RS18070 -0.6 -1.5 HAD family hydrolase compare
LRK53_RS13895 -0.6 -0.6 histone H1-like repetitive region-containing protein compare
LRK53_RS02710 -0.6 -2.5 NYN domain-containing protein compare
LRK53_RS12150 -0.6 -2.3 trigger factor compare
LRK53_RS00410 -0.6 -2.3 M20 family metallopeptidase compare
LRK53_RS14865 -0.6 -1.1 CBS domain-containing protein compare
LRK53_RS01105 -0.5 -2.6 hypothetical protein compare
LRK53_RS17055 -0.5 -2.5 M15 family metallopeptidase compare
LRK53_RS13055 -0.5 -1.9 hypothetical protein compare
LRK53_RS03810 -0.5 -1.7 thiazole synthase compare
LRK53_RS03225 -0.5 -1.3 hypothetical protein compare
LRK53_RS16020 -0.5 -1.9 RDD family protein compare
LRK53_RS12545 -0.5 -1.6 hypothetical protein compare
LRK53_RS14135 -0.5 -2.4 putative cation transport regulator ChaB compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; planktonic sample experiments