Experiment set2S17 for Erwinia amylovora T8

Compare to:

Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4

200 most important genes:

  gene name fitness t score description  
OLJFJH_12075 -5.3 -21.6 Amylovoran biosynthesis protein AmsL compare
OLJFJH_12040 -4.7 -8.9 Amylovoran biosynthesis glycosyltransferase AmsB compare
OLJFJH_06120 -4.7 -4.2 acetylglutamate kinase compare
OLJFJH_06125 -4.4 -14.6 argininosuccinate synthase compare
OLJFJH_01400 -4.4 -18.6 carbamoyl phosphate synthase small subunit compare
OLJFJH_04030 -4.3 -18.3 bifunctional succinylornithine transaminase/acetylornithine transaminase compare
OLJFJH_17635 -4.2 -10.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
OLJFJH_06785 -4.2 -18.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OLJFJH_03580 -4.2 -1.2 transcriptional repressor LexA compare
OLJFJH_06130 -4.2 -23.6 argininosuccinate lyase compare
OLJFJH_06115 -4.2 -17.8 acetylornithine deacetylase compare
OLJFJH_12065 -4.1 -12.2 colanic acid biosynthesis pyruvyl transferase WcaK compare
OLJFJH_15175 -4.1 -18.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
OLJFJH_12070 -4.1 -11.3 Amylovoran biosynthesis glycosyltransferase AmsK compare
OLJFJH_17720 -4.1 -9.2 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
OLJFJH_12165 -4.1 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
OLJFJH_09115 -4.0 -14.1 amino-acid N-acetyltransferase compare
OLJFJH_01395 -4.0 -17.7 carbamoyl-phosphate synthase large subunit compare
OLJFJH_07335 -4.0 -17.4 ornithine carbamoyltransferase compare
OLJFJH_06780 -4.0 -17.6 phosphoribosylamine--glycine ligase compare
OLJFJH_10500 -4.0 -4.7 IMP dehydrogenase compare
OLJFJH_15555 -3.9 -2.0 23S rRNA accumulation protein YceD compare
OLJFJH_12155 -3.9 -7.2 imidazole glycerol phosphate synthase subunit HisF compare
OLJFJH_05510 -3.8 -4.6 ribosome-dependent GTPase TypA compare
OLJFJH_10305 -3.8 -19.5 phosphoribosylformylglycinamidine synthase compare
OLJFJH_10590 -3.8 -9.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
OLJFJH_08880 -3.7 -11.5 diaminopimelate decarboxylase compare
OLJFJH_17630 -3.7 -1.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
OLJFJH_06105 -3.7 -19.1 methylenetetrahydrofolate reductase compare
OLJFJH_11280 -3.6 -14.2 amidophosphoribosyltransferase compare
OLJFJH_05615 -3.5 -2.7 Conserved uncharacterized protein compare
OLJFJH_12045 -3.5 -2.6 Amylovoran biosynthesis protein AmsC compare
OLJFJH_05635 -3.5 -2.1 beta family protein compare
OLJFJH_06480 -3.4 -19.4 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
OLJFJH_16950 -3.4 -3.1 2-oxoglutarate dehydrogenase E1 component compare
OLJFJH_12150 -3.4 -5.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
OLJFJH_12050 -3.4 -4.1 Amylovoran biosynthesis glycosyltransferase AmsD compare
OLJFJH_12180 -3.3 -20.9 histidinol dehydrogenase compare
OLJFJH_12170 -3.2 -9.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
OLJFJH_13120 -3.2 -2.2 septum site-determining protein MinC compare
OLJFJH_10645 -3.1 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
OLJFJH_07675 -3.0 -13.8 outer membrane channel protein TolC compare
OLJFJH_13570 -3.0 -8.9 orotidine-5'-phosphate decarboxylase compare
OLJFJH_01300 -3.0 -5.3 3-isopropylmalate dehydratase small subunit compare
OLJFJH_13470 -3.0 -12.1 tryptophan synthase subunit alpha compare
OLJFJH_12175 -2.9 -13.2 histidinol-phosphate transaminase compare
OLJFJH_12035 -2.9 -21.1 Putative tyrosine-protein kinase AmsA compare
OLJFJH_13475 -2.8 -17.0 tryptophan synthase subunit beta compare
OLJFJH_08795 -2.8 -15.6 hydrolase compare
OLJFJH_13350 -2.8 -7.1 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase compare
OLJFJH_00595 -2.8 -5.7 sigma E protease regulator RseP compare
OLJFJH_10860 -2.8 -2.4 phosphocarrier protein Hpr compare
OLJFJH_17775 -2.8 -14.8 EamA-like transporter family compare
OLJFJH_06985 -2.8 -15.6 outer membrane-stress sensor serine endopeptidase DegS compare
OLJFJH_17855 -2.8 -18.5 multidrug efflux RND transporter permease subunit AcrB compare
OLJFJH_01370 -2.7 -3.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
OLJFJH_05470 -2.7 -2.1 DNA polymerase I compare
OLJFJH_15670 -2.7 -8.6 dihydroorotase compare
OLJFJH_01290 -2.7 -19.7 3-isopropylmalate dehydrogenase compare
OLJFJH_13355 -2.7 -8.7 4-oxalmesaconate hydratase compare
OLJFJH_12160 -2.7 -1.0 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase compare
OLJFJH_01295 -2.6 -14.9 3-isopropylmalate dehydratase large subunit compare
OLJFJH_15725 -2.6 -7.6 glucan biosynthesis protein G compare
OLJFJH_15720 -2.6 -15.9 glucan biosynthesis glucosyltransferase H compare
OLJFJH_08875 -2.6 -10.6 LysR family transcriptional regulator compare
OLJFJH_13510 -2.6 -8.7 23S rRNA pseudouridine(2605) synthase RluB compare
OLJFJH_17850 -2.5 -12.7 efflux transporter periplasmic adaptor subunit compare
OLJFJH_12025 -2.5 -14.2 Amylovoran export outer membrane protein AmsH compare
OLJFJH_12030 -2.5 -13.0 putative low molecular weight protein-tyrosine-phosphatase AmsI compare
OLJFJH_13480 -2.5 -6.3 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
OLJFJH_06525 -2.4 -2.9 Sec-independent protein translocase subunit TatC compare
OLJFJH_02090 -2.4 -12.1 sorbitol-6-phosphate dehydrogenase compare
OLJFJH_04160 -2.4 -5.6 two-component system response regulator OmpR compare
OLJFJH_12885 -2.4 -7.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
OLJFJH_06535 -2.4 -6.9 transcription/translation regulatory transformer protein RfaH compare
OLJFJH_06475 -2.4 -7.8 HTH-type transcriptional regulator MetR compare
OLJFJH_15990 -2.4 -8.4 quinone-dependent dihydroorotate dehydrogenase compare
OLJFJH_09590 -2.4 -2.5 carbon storage regulator CsrA compare
OLJFJH_02410 -2.3 -7.3 3'(2') 5'-bisphosphate nucleotidase CysQ compare
OLJFJH_12185 -2.3 -7.1 ATP phosphoribosyltransferase compare
OLJFJH_13345 -2.3 -3.7 4-oxalomesaconate tautomerase compare
OLJFJH_10215 -2.3 -8.2 RNA polymerase sigma factor RpoE compare
OLJFJH_06995 -2.2 -3.3 Z-ring associated protein ZapG compare
OLJFJH_07330 -2.2 -14.0 aspartate carbamoyltransferase compare
OLJFJH_01485 -2.2 -9.2 threonine synthase compare
OLJFJH_14150 -2.2 -0.8 osmotically-inducible lipoprotein B compare
OLJFJH_06095 -2.2 -10.0 cystathionine gamma-synthase compare
OLJFJH_06245 -2.1 -16.1 ketol-acid reductoisomerase compare
OLJFJH_09065 -2.1 -1.9 thymidylate synthase compare
OLJFJH_04080 -2.0 -3.8 adenine-specific DNA-methyltransferase compare
OLJFJH_04990 -2.0 -2.4 mannitol-1-phosphate 5-dehydrogenase compare
OLJFJH_06225 -2.0 -14.5 branched-chain-amino-acid transaminase compare
OLJFJH_11230 -2.0 -3.8 4-phosphoerythronate dehydrogenase PdxB compare
OLJFJH_10855 -2.0 -11.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
OLJFJH_09610 -2.0 -0.6 tRNA-Arg compare
OLJFJH_05870 -1.9 -6.0 lipopolysaccharide biosynthesis protein compare
OLJFJH_07820 -1.9 -13.7 cystathionine beta-lyase compare
OLJFJH_03650 -1.9 -13.6 homoserine O-succinyltransferase compare
OLJFJH_16180 -1.9 -7.5 cell division protein FtsK compare
OLJFJH_10200 -1.9 -6.9 ATP-dependent RNA helicase SrmB compare
OLJFJH_07070 -1.9 -8.5 RNA polymerase factor sigma-54 compare
OLJFJH_09310 -1.8 -7.6 phosphoadenylyl-sulfate reductase compare
OLJFJH_11455 -1.8 -1.0 NADH-quinone oxidoreductase subunit NuoK compare
OLJFJH_13495 -1.8 -11.2 anthranilate synthase component 1 compare
OLJFJH_17090 -1.8 -3.5 N-acetylglucosamine-6-phosphate deacetylase compare
OLJFJH_13440 -1.8 -2.1 TonB system transport protein TonB compare
OLJFJH_00745 -1.8 -11.6 bifunctional glycosyl transferase/transpeptidase compare
OLJFJH_05495 -1.8 -5.6 nitrogen regulation protein NR(I) compare
OLJFJH_05835 -1.8 -4.0 glycosyl transferase compare
OLJFJH_01285 -1.7 -9.3 2-isopropylmalate synthase compare
OLJFJH_03450 -1.7 -3.9 aromatic amino acid aminotransferase compare
OLJFJH_05770 -1.7 -4.1 orotate phosphoribosyltransferase compare
OLJFJH_06230 -1.7 -11.5 dihydroxy-acid dehydratase compare
OLJFJH_13490 -1.7 -3.0 anthranilate synthase component II compare
OLJFJH_05910 -1.6 -7.8 protein-export chaperone SecB compare
OLJFJH_03260 -1.6 -8.6 translation factor (SUA5) compare
OLJFJH_01595 -1.6 -5.4 phosphoserine phosphatase compare
OLJFJH_01770 -1.6 -9.6 hypothetical protein compare
OLJFJH_16040 -1.6 -7.9 Outer membrane porin OmpC/OmpF/PhoE compare
OLJFJH_16780 -1.6 -3.6 6-phosphogluconolactonase compare
OLJFJH_01490 -1.5 -6.0 homoserine kinase compare
OLJFJH_10715 -1.5 -0.6 hypothetical protein compare
OLJFJH_17880 -1.5 -1.6 transcriptional regulator compare
OLJFJH_13530 -1.5 -2.5 HTH-type transcriptional regulator CysB compare
OLJFJH_01835 -1.5 -6.0 T6SS amidase immunity protein Tai4 family protein compare
OLJFJH_05955 -1.5 -9.7 6-phosphofructokinase compare
OLJFJH_05865 -1.5 -6.8 ligase compare
OLJFJH_05645 -1.5 -1.1 hypothetical protein compare
OLJFJH_13485 -1.5 -3.6 Anthranilate phosphoribosyltransferase compare
OLJFJH_09305 -1.4 -6.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OLJFJH_05180 -1.4 -0.8 membrane protein insertion efficiency factor YidD compare
OLJFJH_15115 -1.4 -1.3 YgdI/YgdR family lipoprotein compare
OLJFJH_18020 -1.3 -3.2 cytochrome o ubiquinol oxidase subunit IV compare
OLJFJH_00695 -1.3 -3.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
OLJFJH_18010 -1.3 -5.0 cytochrome o ubiquinol oxidase subunit I compare
OLJFJH_11595 -1.3 -4.8 FAD:protein FMN transferase ApbE compare
OLJFJH_01380 -1.3 -4.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
OLJFJH_05765 -1.3 -2.9 ribonuclease PH compare
OLJFJH_02970 -1.3 -5.5 histidine--tRNA ligase compare
OLJFJH_18025 -1.3 -3.5 heme o synthase compare
OLJFJH_04910 -1.3 -0.9 hypothetical protein compare
OLJFJH_11050 -1.3 -1.6 tRNA-Arg compare
OLJFJH_01895 -1.3 -6.6 type VI secretion system baseplate subunit TssK compare
OLJFJH_02470 -1.3 -8.4 ribonuclease R compare
OLJFJH_05860 -1.3 -5.4 glycosyl transferase compare
OLJFJH_09725 -1.3 -4.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
OLJFJH_10220 -1.3 -0.6 anti-sigma-E factor RseA compare
OLJFJH_13250 -1.2 -1.6 NAD(P)H nitroreductase compare
OLJFJH_05915 -1.2 -7.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
OLJFJH_03945 -1.2 -0.8 peptidylprolyl isomerase compare
OLJFJH_09375 -1.2 -4.8 murein hydrolase activator NlpD compare
OLJFJH_06415 -1.2 -4.6 tyrosine recombinase XerC compare
OLJFJH_14950 -1.2 -5.4 redox-regulated ATPase YchF compare
OLJFJH_12105 -1.2 -2.0 ABC transporter permease compare
OLJFJH_01350 -1.2 -3.7 co-chaperone DjlA compare
OLJFJH_07825 -1.2 -3.1 tol-pal system-associated acyl-CoA thioesterase compare
OLJFJH_13575 -1.1 -1.1 stress response translation initiation inhibitor YciH compare
OLJFJH_10735 -1.1 -2.0 hypothetical protein compare
OLJFJH_06735 -1.1 -7.2 thiamine phosphate synthase compare
OLJFJH_16980 -1.1 -7.6 citrate synthase compare
OLJFJH_16940 -1.1 -4.9 ADP-forming succinate--CoA ligase subunit beta compare
OLJFJH_14495 -1.1 -4.6 ribonuclease T compare
OLJFJH_01375 -1.1 -3.3 Co2+/Mg2+ efflux protein ApaG compare
OLJFJH_10675 -1.1 -1.6 hypothetical protein compare
OLJFJH_05850 -1.1 -6.6 deacetylase compare
OLJFJH_05630 -1.1 -1.1 sce7726 family protein compare
OLJFJH_07060 -1.1 -4.2 PTS IIA-like nitrogen regulatory protein PtsN compare
OLJFJH_08735 -1.1 -4.5 phosphoglycerate dehydrogenase compare
OLJFJH_01890 -1.1 -6.3 DotU family type VI secretion system protein compare
OLJFJH_10850 -1.1 -2.2 PTS glucose transporter subunit IIA compare
OLJFJH_04305 -1.1 -0.6 DUF2756 domain-containing protein compare
OLJFJH_11625 -1.0 -2.0 Conserved uncharacterized protein compare
OLJFJH_16190 -1.0 -3.5 thioredoxin-disulfide reductase compare
OLJFJH_04155 -1.0 -3.4 two-component system sensor histidine kinase EnvZ compare
OLJFJH_01495 -1.0 -7.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
OLJFJH_10360 -1.0 -1.4 Fe-S cluster assembly transcriptional regulator IscR compare
OLJFJH_18015 -1.0 -2.8 cytochrome o ubiquinol oxidase subunit III compare
OLJFJH_09710 -1.0 -6.8 bifunctional chorismate mutase/prephenate dehydratase compare
OLJFJH_12850 -1.0 -1.1 crossover junction endodeoxyribonuclease RuvC compare
OLJFJH_16900 -1.0 -3.1 cell division protein CpoB compare
OLJFJH_00690 -1.0 -3.6 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
OLJFJH_11240 -1.0 -3.6 tRNA pseudouridine(38-40) synthase TruA compare
OLJFJH_11930 -1.0 -2.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
OLJFJH_07275 -1.0 -1.9 DEAD/DEAH family ATP-dependent RNA helicase compare
OLJFJH_07025 -1.0 -7.4 sulfite reductase subunit alpha compare
OLJFJH_12965 -1.0 -1.1 Lysine exporter LysO compare
OLJFJH_08740 -1.0 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
OLJFJH_08835 -1.0 -2.1 site-specific tyrosine recombinase XerD compare
OLJFJH_17675 -1.0 -0.9 colicin immunity protein Cui compare
OLJFJH_12135 -1.0 -1.5 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase compare
OLJFJH_06060 -1.0 -4.3 HslU--HslV peptidase ATPase subunit compare
OLJFJH_02515 -1.0 -1.8 N-acetylmuramoyl-L-alanine amidase AmiB compare
OLJFJH_06545 -1.0 -2.4 NAD(P)H-flavin reductase compare
OLJFJH_14860 -1.0 -7.0 glycosyl hydrolase family 32 compare
OLJFJH_12120 -1.0 -1.1 UDP-galactopyranose mutase compare
OLJFJH_17040 -1.0 -1.2 replication initiation negative regulator SeqA compare
OLJFJH_16315 -1.0 -1.8 YbjN domain-containing protein compare
OLJFJH_09575 -1.0 -2.5 recombinase RecA compare
OLJFJH_16935 -0.9 -5.4 succinate--CoA ligase subunit alpha compare
OLJFJH_00715 -0.9 -0.6 growth inhibitor PemK compare


Specific Phenotypes

None in this experiment