Experiment set2S17 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Guanine 0.6617 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS10295 -2.0 -2.7 hypothetical protein compare
A4249_RS06665 -1.7 -2.7 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS09075 -1.5 -3.1 hypothetical protein compare
A4249_RS07290 -1.2 -2.7 ribonuclease E/G compare
A4249_RS04125 -1.1 -2.4 mechanosensitive ion channel family protein compare
A4249_RS16085 -1.0 -1.5 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS06525 -1.0 -1.4 SCP2 sterol-binding domain-containing protein compare
A4249_RS14905 -0.9 -2.0 phosphonate ABC transporter ATP-binding protein compare
A4249_RS17085 -0.9 -1.7 sugar O-acetyltransferase compare
A4249_RS08865 -0.9 -2.2 DUF1192 domain-containing protein compare
A4249_RS16455 -0.9 -1.2 helix-turn-helix transcriptional regulator compare
A4249_RS01085 -0.9 -2.1 DUF2282 domain-containing protein compare
A4249_RS00720 -0.9 -1.6 DUF1294 domain-containing protein compare
A4249_RS13200 -0.9 -2.2 thiamine pyrophosphate-dependent enzyme compare
A4249_RS03690 -0.8 -1.6 hypothetical protein compare
A4249_RS01590 -0.8 -1.4 site-specific DNA-methyltransferase compare
A4249_RS12795 -0.7 -1.3 DsbE family thiol:disulfide interchange protein compare
A4249_RS07470 -0.7 -0.9 hypothetical protein compare
A4249_RS13180 -0.6 -1.3 SDR family oxidoreductase compare
A4249_RS06985 -0.6 -1.0 hypothetical protein compare
A4249_RS06230 -0.6 -1.3 OmpH family outer membrane protein compare
A4249_RS13750 -0.6 -1.4 hypothetical protein compare
A4249_RS14870 -0.6 -2.8 DUF3597 family protein compare
A4249_RS11290 -0.6 -1.7 double-strand break repair helicase AddA compare
A4249_RS02325 -0.6 -0.8 23S ribosomal RNA compare
A4249_RS14895 -0.6 -1.5 phosphonate ABC transporter, permease protein PhnE compare
A4249_RS01415 -0.6 -1.1 phage Gp37/Gp68 family protein compare
A4249_RS16585 -0.5 -1.8 hypothetical protein compare
A4249_RS16765 -0.5 -1.6 hypothetical protein compare
A4249_RS00895 -0.5 -1.4 DUF1476 domain-containing protein compare
A4249_RS04635 -0.5 -4.6 cyclic nucleotide-binding domain-containing protein compare
A4249_RS01460 -0.5 -0.9 signal peptide peptidase SppA compare
A4249_RS13195 -0.5 -2.0 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS05390 -0.5 -1.1 SOS response-associated peptidase family protein compare
A4249_RS11365 -0.5 -1.3 cation diffusion facilitator family transporter compare
A4249_RS02255 -0.5 -1.1 DUF2093 domain-containing protein compare
A4249_RS01670 -0.5 -2.0 excinuclease ABC subunit UvrC compare
A4249_RS09640 -0.5 -1.7 hypothetical protein compare
A4249_RS07405 -0.5 -1.8 hypothetical protein compare
A4249_RS14205 -0.5 -0.9 response regulator compare
A4249_RS06780 -0.5 -0.9 YicC family protein compare
A4249_RS15595 -0.4 -1.9 hypothetical protein compare
A4249_RS05595 -0.4 -1.1 dicarboxylate/amino acid:cation symporter compare
A4249_RS06680 -0.4 -1.1 tipN compare
A4249_RS15980 -0.4 -2.1 multidrug efflux SMR transporter compare
A4249_RS01675 -0.4 -1.5 DMT family transporter compare
A4249_RS00925 -0.4 -1.2 multidrug efflux SMR transporter compare
A4249_RS10510 -0.4 -1.5 hypothetical protein compare
A4249_RS05845 -0.4 -1.2 sigma-70 family RNA polymerase sigma factor compare
A4249_RS10115 -0.4 -1.3 phage tail tape measure protein compare
A4249_RS08855 -0.4 -1.3 L,D-transpeptidase family protein compare
A4249_RS10110 -0.4 -0.8 DUF805 domain-containing protein compare
A4249_RS11125 -0.4 -3.0 glycosyltransferase family 9 protein compare
A4249_RS11560 -0.4 -0.7 peroxiredoxin compare
A4249_RS02620 -0.4 -2.6 DNA repair protein RecN compare
A4249_RS14675 -0.4 -2.4 metallopeptidase family protein compare
A4249_RS12275 -0.4 -1.6 cobaltochelatase subunit CobT compare
A4249_RS14720 -0.4 -2.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
A4249_RS11550 -0.4 -2.0 cupin domain-containing protein compare
A4249_RS01265 -0.4 -1.5 hypothetical protein compare
A4249_RS05155 -0.4 -1.6 CHASE3 domain-containing protein compare
A4249_RS11650 -0.4 -1.9 mercuric transporter MerT family protein compare
A4249_RS13060 -0.4 -3.1 AGE family epimerase/isomerase compare
A4249_RS02345 -0.4 -1.8 alpha/beta hydrolase compare
A4249_RS08685 -0.4 -1.2 hypothetical protein compare
A4249_RS09055 -0.4 -1.2 hypothetical protein compare
A4249_RS13025 -0.4 -3.1 hypothetical protein compare
A4249_RS05960 -0.4 -1.0 MerR family transcriptional regulator compare
A4249_RS09465 -0.4 -1.8 prephenate dehydrogenase compare
A4249_RS03815 -0.4 -2.0 antibiotic biosynthesis monooxygenase compare
A4249_RS14580 -0.4 -1.3 hypothetical protein compare
A4249_RS08495 -0.4 -0.6 Na+/H+ antiporter subunit E compare
A4249_RS10105 -0.4 -0.7 DUF2460 domain-containing protein compare
A4249_RS13495 -0.4 -1.1 organic hydroperoxide resistance protein compare
A4249_RS01815 -0.4 -1.8 DNA mismatch endonuclease Vsr compare
A4249_RS01285 -0.4 -1.4 head decoration protein compare
A4249_RS08725 -0.4 -1.7 hypothetical protein compare
A4249_RS04975 -0.4 -2.2 YbaY family lipoprotein compare
A4249_RS02840 -0.3 -1.5 N-succinylarginine dihydrolase compare
A4249_RS13805 -0.3 -0.4 HAD family hydrolase compare
A4249_RS13575 -0.3 -2.0 GNAT family N-acetyltransferase compare
A4249_RS12455 -0.3 -1.2 hypothetical protein compare
A4249_RS02825 -0.3 -2.0 heat shock protein HspQ compare
A4249_RS07645 -0.3 -1.0 fumarylacetoacetate hydrolase family protein compare
A4249_RS15000 -0.3 -1.8 endonuclease III compare
A4249_RS12980 -0.3 -3.0 GDP-mannose 4,6-dehydratase compare
A4249_RS13070 -0.3 -2.5 phosphomannomutase/phosphoglucomutase compare
A4249_RS16800 -0.3 -1.3 hypothetical protein compare
A4249_RS03820 -0.3 -1.0 DUF1489 domain-containing protein compare
A4249_RS12170 -0.3 -1.7 hypothetical protein compare
A4249_RS03265 -0.3 -1.5 metal-sensitive transcriptional regulator compare
A4249_RS00700 -0.3 -0.9 hypothetical protein compare
A4249_RS14950 -0.3 -0.9 ParD-like family protein compare
A4249_RS09265 -0.3 -0.7 exodeoxyribonuclease VII large subunit compare
A4249_RS09350 -0.3 -1.0 PGPGW domain-containing protein compare
A4249_RS06830 -0.3 -1.2 chorismate mutase compare
A4249_RS08250 -0.3 -1.8 DUF3126 family protein compare
A4249_RS02685 -0.3 -2.0 CoA pyrophosphatase compare
A4249_RS16830 -0.3 -1.3 hypothetical protein compare
A4249_RS11645 -0.3 -1.6 helix-turn-helix domain-containing protein compare
A4249_RS13045 -0.3 -2.5 glycosyltransferase family 1 protein compare
A4249_RS06180 -0.3 -1.5 transcriptional repressor LexA compare
A4249_RS16325 -0.3 -1.3 helix-turn-helix transcriptional regulator compare
A4249_RS08220 -0.3 -0.4 phosphoribosylglycinamide formyltransferase compare
A4249_RS10500 -0.3 -1.3 PspA/IM30 family protein compare
A4249_RS11675 -0.3 -1.7 hypothetical protein compare
A4249_RS03140 -0.3 -0.6 efflux RND transporter periplasmic adaptor subunit compare
A4249_RS07665 -0.3 -0.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS10785 -0.3 -0.7 hypothetical protein compare
A4249_RS09330 -0.3 -0.4 glycine cleavage system protein GcvH compare
A4249_RS00505 -0.3 -1.3 GNAT family N-acetyltransferase compare
A4249_RS14510 -0.3 -0.7 hypothetical protein compare
A4249_RS11795 -0.3 -0.4 DUF2493 domain-containing protein compare
A4249_RS01765 -0.3 -1.1 DUF3489 domain-containing protein compare
A4249_RS01785 -0.3 -1.8 DUF5681 domain-containing protein compare
A4249_RS14065 -0.3 -1.0 MFS transporter compare
A4249_RS13450 -0.3 -0.7 PilZ domain-containing protein compare
A4249_RS11160 -0.3 -2.1 SDR family NAD(P)-dependent oxidoreductase compare
A4249_RS10365 -0.3 -0.9 hypothetical protein compare
A4249_RS08585 -0.3 -1.1 ABC-type transport auxiliary lipoprotein family protein compare
A4249_RS07050 -0.3 -0.6 hypothetical protein compare
A4249_RS13020 -0.3 -1.7 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS10430 -0.3 -1.7 S1/P1 Nuclease compare
A4249_RS11380 -0.3 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
A4249_RS10360 -0.3 -0.4 HAMP domain-containing sensor histidine kinase compare
A4249_RS03065 -0.3 -1.0 arsenate reductase (glutaredoxin) compare
A4249_RS02815 -0.3 -1.7 peptidylprolyl isomerase compare
A4249_RS02165 -0.3 -0.4 c-type cytochrome compare
A4249_RS05300 -0.3 -0.6 hypothetical protein compare
A4249_RS09455 -0.3 -1.6 methyl-accepting chemotaxis protein compare
A4249_RS15605 -0.3 -1.2 hypothetical protein compare
A4249_RS02645 -0.3 -0.4 cobalamin biosynthesis protein CbiG compare
A4249_RS12635 -0.3 -1.1 phosphatase PAP2 family protein compare
A4249_RS12915 -0.3 -0.9 hypothetical protein compare
A4249_RS04790 -0.3 -0.8 sulfurtransferase TusA family protein compare
A4249_RS11185 -0.3 -1.2 exopolysaccharide biosynthesis protein compare
A4249_RS10840 -0.3 -1.2 hypothetical protein compare
A4249_RS10085 -0.2 -1.5 DnaJ C-terminal domain-containing protein compare
A4249_RS06485 -0.2 -0.9 hypothetical protein compare
A4249_RS06690 -0.2 -0.8 DUF423 domain-containing protein compare
A4249_RS10815 -0.2 -0.7 Do family serine endopeptidase compare
A4249_RS16655 -0.2 -1.1 hypothetical protein compare
A4249_RS12390 -0.2 -0.9 ATP-dependent protease subunit HslV compare
A4249_RS12740 -0.2 -1.6 TerC family protein compare
A4249_RS10910 -0.2 -1.6 hypothetical protein compare
A4249_RS13035 -0.2 -1.3 hypothetical protein compare
A4249_RS12305 -0.2 -1.1 glycosyltransferase family 1 protein compare
A4249_RS08545 -0.2 -1.3 rod-binding protein compare
A4249_RS12295 -0.2 -0.9 trehalose-phosphatase compare
A4249_RS03425 -0.2 -1.4 hypothetical protein compare
A4249_RS11220 -0.2 -1.1 hypothetical protein compare
A4249_RS07790 -0.2 -1.6 hypothetical protein compare
A4249_RS14795 -0.2 -1.3 acyl dehydratase compare
A4249_RS09195 -0.2 -1.0 TldD/PmbA family protein compare
A4249_RS02380 -0.2 -1.5 HlyD family secretion protein compare
A4249_RS03570 -0.2 -0.6 TonB family protein compare
A4249_RS15090 -0.2 -1.2 NAD(+) diphosphatase compare
A4249_RS14865 -0.2 -1.8 glutathione S-transferase N-terminal domain-containing protein compare
A4249_RS08440 -0.2 -0.3 TlyA family RNA methyltransferase compare
A4249_RS12330 -0.2 -1.3 hypothetical protein compare
A4249_RS08945 -0.2 -1.2 GGDEF domain-containing protein compare
A4249_RS13565 -0.2 -1.5 carbon-nitrogen hydrolase family protein compare
A4249_RS05695 -0.2 -1.7 zinc-binding dehydrogenase compare
A4249_RS08825 -0.2 -1.0 tryptophan-rich sensory protein compare
A4249_RS06655 -0.2 -1.2 TPM domain-containing protein compare
A4249_RS03060 -0.2 -0.6 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS10160 -0.2 -0.6 HK97 family phage prohead protease compare
A4249_RS11775 -0.2 -1.1 helix-turn-helix domain-containing protein compare
A4249_RS14530 -0.2 -1.1 OmpA family protein compare
A4249_RS08510 -0.2 -0.8 hypothetical protein compare
A4249_RS00830 -0.2 -0.7 hypothetical protein compare
A4249_RS02800 -0.2 -1.4 aminotransferase class IV compare
A4249_RS11225 -0.2 -0.7 fumarylacetoacetate hydrolase family protein compare
A4249_RS05145 -0.2 -1.3 sensory rhodopsin transducer compare
A4249_RS08805 -0.2 -1.5 HAMP domain-containing sensor histidine kinase compare
A4249_RS05620 -0.2 -1.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS07570 -0.2 -1.5 tyrosine-type recombinase/integrase compare
A4249_RS10750 -0.2 -0.9 hypothetical protein compare
A4249_RS12090 -0.2 -1.1 fumarylacetoacetate hydrolase family protein compare
A4249_RS01760 -0.2 -0.9 DUF2924 domain-containing protein compare
A4249_RS12830 -0.2 -0.7 YkvA family protein compare
A4249_RS16685 -0.2 -0.3 tRNA-Arg compare
A4249_RS11350 -0.2 -0.8 pseudouridine synthase compare
A4249_RS00850 -0.2 -1.4 hypothetical protein compare
A4249_RS11265 -0.2 -1.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
A4249_RS16740 -0.2 -1.3 hypothetical protein compare
A4249_RS07185 -0.2 -1.0 hypothetical protein compare
A4249_RS10100 -0.2 -1.0 DUF2163 domain-containing protein compare
A4249_RS10285 -0.2 -1.5 methyl-accepting chemotaxis protein compare
A4249_RS13030 -0.2 -1.5 glycosyltransferase family 1 protein compare
A4249_RS16770 -0.2 -1.0 hypothetical protein compare
A4249_RS05310 -0.2 -1.3 glycosyltransferase family 2 protein compare
A4249_RS02865 -0.2 -0.6 arsenate reductase family protein compare
A4249_RS02785 -0.2 -0.8 DUF1003 domain-containing protein compare
A4249_RS10135 -0.2 -0.8 phage head-tail adapter protein compare
A4249_RS03845 -0.2 -0.8 TerC family protein compare
A4249_RS11805 -0.2 -0.4 SOS response-associated peptidase compare
A4249_RS06280 -0.2 -1.3 DUF4142 domain-containing protein compare
A4249_RS17065 -0.2 -0.8 methyltransferase domain-containing protein compare
A4249_RS00810 -0.2 -1.4 glycosyltransferase family 4 protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Guanine across organisms