Experiment set2S163 for Rhodanobacter sp000427505 FW510-R12

Compare to:

Biofilm; Day4; SGW; pH7

200 most important genes:

  gene name fitness t score description  
LRK53_RS04445 -3.3 -2.2 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS06670 -3.0 -2.1 RIP metalloprotease RseP compare
LRK53_RS14090 -2.9 -4.7 ABC transporter ATP-binding protein compare
LRK53_RS14840 -2.8 -2.0 trypsin-like peptidase domain-containing protein compare
LRK53_RS04390 -2.8 -3.3 glycosyltransferase family 2 protein compare
LRK53_RS11300 -2.7 -5.0 polysaccharide biosynthesis protein compare
LRK53_RS03700 -2.7 -1.1 transcription termination factor Rho compare
LRK53_RS01530 -2.6 -1.1 YiiD C-terminal domain-containing protein compare
LRK53_RS12005 -2.5 -1.7 RNA polymerase sigma factor RpoE compare
LRK53_RS11795 -2.5 -2.4 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS06570 -2.4 -1.2 DUF615 domain-containing protein compare
LRK53_RS16035 -2.3 -3.5 hypothetical protein compare
LRK53_RS05905 -2.3 -2.7 thymidylate synthase compare
LRK53_RS11330 -2.3 -3.2 (d)CMP kinase compare
LRK53_RS17865 -2.1 -2.9 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS14400 -2.1 -1.2 TetR family transcriptional regulator compare
LRK53_RS16870 -2.0 -1.5 UPF0149 family protein compare
LRK53_RS10085 -2.0 -2.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS00105 -1.9 -1.1 hypothetical protein compare
LRK53_RS01505 -1.9 -3.7 hotdog fold thioesterase compare
LRK53_RS08350 -1.8 -4.7 tryptophan synthase subunit beta compare
LRK53_RS15060 -1.7 -1.0 flagellar export protein FliJ compare
LRK53_RS00945 -1.7 -2.6 helix-turn-helix domain-containing protein compare
LRK53_RS18675 -1.7 -2.6 DNA polymerase Y family protein compare
LRK53_RS09170 -1.7 -2.9 cupin domain-containing protein compare
LRK53_RS03330 -1.7 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS03715 -1.6 -1.5 cell division ATP-binding protein FtsE compare
LRK53_RS11805 -1.6 -2.7 heavy metal translocating P-type ATPase compare
LRK53_RS18155 -1.6 -1.9 hypothetical protein compare
LRK53_RS03010 -1.5 -1.4 hypothetical protein compare
LRK53_RS04070 -1.5 -0.6 NADP-dependent malic enzyme compare
LRK53_RS11780 -1.5 -5.0 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS03545 -1.5 -1.7 DUF2249 domain-containing protein compare
LRK53_RS16160 -1.4 -4.2 hypothetical protein compare
LRK53_RS14215 -1.4 -2.8 hypothetical protein compare
LRK53_RS06175 -1.4 -1.6 acylphosphatase compare
LRK53_RS08100 -1.4 -1.5 MBL fold metallo-hydrolase compare
LRK53_RS05170 -1.4 -1.8 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS03690 -1.4 -2.6 dihydroorotase compare
LRK53_RS13095 -1.4 -1.6 AzlD domain-containing protein compare
LRK53_RS01585 -1.3 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS13695 -1.3 -2.7 response regulator compare
LRK53_RS06715 -1.3 -2.1 [protein-PII] uridylyltransferase compare
LRK53_RS08430 -1.3 -1.7 30S ribosomal protein THX compare
LRK53_RS02340 -1.3 -2.6 isopentenyl-diphosphate Delta-isomerase compare
LRK53_RS04625 -1.3 -1.4 peptide chain release factor 3 compare
LRK53_RS01190 -1.3 -3.4 hypothetical protein compare
LRK53_RS10035 -1.3 -1.0 hypothetical protein compare
LRK53_RS16165 -1.3 -3.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS03625 -1.3 -1.8 ABC transporter ATP-binding protein compare
LRK53_RS07300 -1.3 -3.6 DEAD/DEAH box helicase compare
LRK53_RS14800 -1.2 -6.3 DUF1631 domain-containing protein compare
LRK53_RS18800 -1.2 -1.5 carbon storage regulator compare
LRK53_RS11185 -1.2 -0.8 DUF4115 domain-containing protein compare
LRK53_RS14520 -1.2 -1.2 GNAT family N-acetyltransferase compare
LRK53_RS07020 -1.2 -1.7 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS00720 -1.2 -2.2 acyloxyacyl hydrolase compare
LRK53_RS15880 -1.2 -1.9 IS5 family transposase compare
LRK53_RS11035 -1.2 -1.5 major capsid protein compare
LRK53_RS11310 -1.2 -5.6 lipopolysaccharide assembly protein LapB compare
LRK53_RS15020 -1.2 -2.4 flagellar biosynthetic protein FliR compare
LRK53_RS14865 -1.1 -2.3 CBS domain-containing protein compare
LRK53_RS14010 -1.1 -2.1 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS07280 -1.1 -1.9 YkgJ family cysteine cluster protein compare
LRK53_RS09730 -1.1 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS01745 -1.1 -6.0 TetR/AcrR family transcriptional regulator compare
LRK53_RS03160 -1.1 -1.8 homoserine kinase compare
LRK53_RS17625 -1.1 -1.5 benenodin family lasso peptide compare
LRK53_RS15100 -1.1 -1.8 flagellar protein FliT compare
LRK53_RS18670 -1.1 -2.5 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS17785 -1.1 -2.8 septal ring lytic transglycosylase RlpA family protein compare
LRK53_RS10985 -1.0 -2.4 phosphatase PAP2 family protein compare
LRK53_RS18950 -1.0 -1.9 hypothetical protein compare
LRK53_RS12605 -1.0 -1.8 hypothetical protein compare
LRK53_RS13070 -1.0 -2.5 OsmC family protein compare
LRK53_RS06850 -1.0 -0.8 protein translocase subunit SecD compare
LRK53_RS00755 -1.0 -2.9 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS11285 -1.0 -1.3 tRNA-binding protein compare
LRK53_RS18120 -1.0 -1.5 energy transducer TonB compare
LRK53_RS01090 -1.0 -2.0 D-aminoacyl-tRNA deacylase compare
LRK53_RS08470 -1.0 -1.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK53_RS06035 -1.0 -1.0 helix-turn-helix domain-containing protein compare
LRK53_RS15625 -1.0 -4.7 hemolysin family protein compare
LRK53_RS04975 -0.9 -4.6 response regulator compare
LRK53_RS00940 -0.9 -0.7 hypothetical protein compare
LRK53_RS13895 -0.9 -0.8 histone H1-like repetitive region-containing protein compare
LRK53_RS12485 -0.9 -1.4 hypothetical protein compare
LRK53_RS15875 -0.9 -1.8 hypothetical protein compare
LRK53_RS08910 -0.9 -2.1 endolytic transglycosylase MltG compare
LRK53_RS15755 -0.9 -1.4 SDR family oxidoreductase compare
LRK53_RS03635 -0.9 -1.1 50S ribosomal protein L33 compare
LRK53_RS15605 -0.9 -1.9 MGMT family protein compare
LRK53_RS04815 -0.9 -2.2 IS5 family transposase compare
LRK53_RS19105 -0.9 -3.0 hypothetical protein compare
LRK53_RS02405 -0.9 -1.4 YecA family protein compare
LRK53_RS07915 -0.9 -3.9 methionine synthase compare
LRK53_RS05760 -0.9 -0.6 chemotaxis protein CheW compare
LRK53_RS14965 -0.9 -2.7 chemotaxis protein CheW compare
LRK53_RS13635 -0.9 -2.4 recombination regulator RecX compare
LRK53_RS16635 -0.8 -1.6 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS04590 -0.8 -4.2 TetR/AcrR family transcriptional regulator compare
LRK53_RS09905 -0.8 -1.3 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS05680 -0.8 -2.0 pyrroline-5-carboxylate reductase compare
LRK53_RS10200 -0.8 -1.4 TraR/DksA C4-type zinc finger protein compare
LRK53_RS16650 -0.8 -1.8 O-acetyl-ADP-ribose deacetylase compare
LRK53_RS06545 -0.8 -2.7 TIGR02099 family protein compare
LRK53_RS04185 -0.8 -2.5 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS11075 -0.8 -2.1 thymidine phosphorylase family protein compare
LRK53_RS12025 -0.8 -1.4 DUF2058 family protein compare
LRK53_RS08205 -0.8 -1.2 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS04950 -0.8 -1.2 carbohydrate kinase compare
LRK53_RS18850 -0.8 -1.3 type IV conjugative transfer system protein TraL compare
LRK53_RS07985 -0.8 -1.8 hypothetical protein compare
LRK53_RS15955 -0.8 -1.6 PhzF family phenazine biosynthesis protein compare
LRK53_RS08385 -0.8 -3.0 efflux transporter outer membrane subunit compare
LRK53_RS07920 -0.8 -3.0 homocysteine S-methyltransferase family protein compare
LRK53_RS14580 -0.8 -4.0 molybdenum ABC transporter ATP-binding protein compare
LRK53_RS07385 -0.7 -4.3 MalM family protein compare
LRK53_RS11190 -0.7 -1.2 type IV pilus biogenesis/stability protein PilW compare
LRK53_RS15860 -0.7 -4.0 NAD-dependent epimerase/dehydratase family protein compare
LRK53_RS17875 -0.7 -2.1 MFS transporter compare
LRK53_RS08425 -0.7 -2.4 cation diffusion facilitator family transporter compare
LRK53_RS05995 -0.7 -4.5 oligosaccharide flippase family protein compare
LRK53_RS17760 -0.7 -3.8 carboxy terminal-processing peptidase compare
LRK53_RS03185 -0.7 -1.2 S-ribosylhomocysteine lyase compare
LRK53_RS13770 -0.7 -1.9 protease HtpX compare
LRK53_RS01565 -0.7 -1.8 hypothetical protein compare
LRK53_RS15705 -0.7 -3.9 RNA polymerase factor sigma-54 compare
LRK53_RS09420 -0.7 -0.9 YidB family protein compare
LRK53_RS01120 -0.7 -1.0 VanZ family protein compare
LRK53_RS18035 -0.7 -2.9 hypothetical protein compare
LRK53_RS11140 -0.7 -1.2 hypothetical protein compare
LRK53_RS16995 -0.7 -0.9 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS17900 -0.7 -1.8 dUTP diphosphatase compare
LRK53_RS03370 -0.7 -0.8 YifB family Mg chelatase-like AAA ATPase compare
LRK53_RS15840 -0.7 -3.0 tetratricopeptide repeat protein compare
LRK53_RS07035 -0.7 -2.0 TolC family protein compare
LRK53_RS19140 -0.7 -0.7 hypothetical protein compare
LRK53_RS01570 -0.7 -1.1 DNA polymerase I compare
LRK53_RS14700 -0.7 -5.0 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK53_RS07115 -0.7 -2.5 hypothetical protein compare
LRK53_RS05810 -0.7 -1.3 DUF4097 family beta strand repeat-containing protein compare
LRK53_RS05970 -0.7 -4.4 glycosyltransferase family 4 protein compare
LRK53_RS13565 -0.7 -0.7 isocitrate dehydrogenase compare
LRK53_RS07045 -0.7 -1.0 response regulator compare
LRK53_RS03865 -0.7 -2.7 DsbA family oxidoreductase compare
LRK53_RS01220 -0.7 -3.0 hypothetical protein compare
LRK53_RS16305 -0.7 -4.1 penicillin-binding protein activator compare
LRK53_RS19070 -0.7 -1.9 hypothetical protein compare
LRK53_RS08730 -0.7 -1.1 hypothetical protein compare
LRK53_RS02300 -0.7 -2.2 hypothetical protein compare
LRK53_RS09100 -0.7 -2.2 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK53_RS09590 -0.7 -0.8 hypothetical protein compare
LRK53_RS00395 -0.6 -1.3 SDR family oxidoreductase compare
LRK53_RS16670 -0.6 -2.8 DUF4381 family protein compare
LRK53_RS11230 -0.6 -2.7 hypothetical protein compare
LRK53_RS08420 -0.6 -2.3 MerC domain-containing protein compare
LRK53_RS09315 -0.6 -1.7 pseudouridine synthase compare
LRK53_RS09830 -0.6 -1.6 phosphoglycerate mutase compare
LRK53_RS16790 -0.6 -0.5 YicC family protein compare
LRK53_RS09710 -0.6 -1.7 high frequency lysogenization protein HflD compare
LRK53_RS06930 -0.6 -1.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS04100 -0.6 -1.3 DUF3247 family protein compare
LRK53_RS17145 -0.6 -2.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS18650 -0.6 -1.1 transposase compare
LRK53_RS00715 -0.6 -3.5 insulinase family protein compare
LRK53_RS18130 -0.6 -1.4 lytic transglycosylase domain-containing protein compare
LRK53_RS19020 -0.6 -1.8 hypothetical protein compare
LRK53_RS14130 -0.6 -1.2 hypothetical protein compare
LRK53_RS05730 -0.6 -2.5 twitching motility response regulator PilG compare
LRK53_RS08485 -0.6 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
LRK53_RS15835 -0.6 -2.5 MAPEG family protein compare
LRK53_RS04690 -0.6 -2.9 cysteine synthase A compare
LRK53_RS10680 -0.6 -1.1 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS05835 -0.6 -4.0 response regulator transcription factor compare
LRK53_RS14085 -0.6 -2.4 ABC transporter permease subunit compare
LRK53_RS12285 -0.6 -1.4 magnesium transporter compare
LRK53_RS15195 -0.6 -1.3 flagellar biosynthesis anti-sigma factor FlgM compare
LRK53_RS02885 -0.6 -1.5 glycosyltransferase family 2 protein compare
LRK53_RS05830 -0.6 -1.5 arylesterase compare
LRK53_RS11825 -0.6 -1.2 exodeoxyribonuclease VII large subunit compare
LRK53_RS02535 -0.6 -3.2 DUF481 domain-containing protein compare
LRK53_RS17495 -0.6 -1.6 hypothetical protein compare
LRK53_RS18885 -0.6 -3.2 hypothetical protein compare
LRK53_RS05930 -0.6 -1.2 endonuclease domain-containing protein compare
LRK53_RS02530 -0.6 -1.2 hypothetical protein compare
LRK53_RS07410 -0.6 -1.2 50S ribosomal protein L9 compare
LRK53_RS00350 -0.6 -2.3 DoxX family protein compare
LRK53_RS07860 -0.6 -2.0 RNA polymerase sigma factor compare
LRK53_RS07450 -0.6 -0.7 50S ribosomal protein L19 compare
LRK53_RS09265 -0.6 -0.6 GntR family transcriptional regulator compare
LRK53_RS14670 -0.6 -0.8 purine-nucleoside phosphorylase compare
LRK53_RS01165 -0.6 -3.9 thiol:disulfide interchange protein DsbA/DsbL compare
LRK53_RS19135 -0.6 -1.1 hypothetical protein compare
LRK53_RS14810 -0.6 -0.8 DUF3301 domain-containing protein compare
LRK53_RS05615 -0.6 -1.2 WGR domain-containing protein compare
LRK53_RS01200 -0.6 -1.5 hypothetical protein compare
LRK53_RS06865 -0.6 -2.6 phosphotransferase compare
LRK53_RS04505 -0.6 -1.5 met regulon transcriptional regulator MetJ compare
LRK53_RS15475 -0.6 -2.6 alpha/beta hydrolase-fold protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; biofilm sample experiments