Experiment set2S160 for Rhodanobacter sp000427505 FW510-R12

Compare to:

Biofilm; Day2; SGW; pH7

200 most important genes:

  gene name fitness t score description  
LRK53_RS11300 -3.5 -4.7 polysaccharide biosynthesis protein compare
LRK53_RS13565 -3.4 -2.6 isocitrate dehydrogenase compare
LRK53_RS09590 -3.1 -2.6 hypothetical protein compare
LRK53_RS06670 -2.9 -2.0 RIP metalloprotease RseP compare
LRK53_RS04445 -2.9 -2.0 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS14110 -2.8 -2.6 GNAT family N-acetyltransferase compare
LRK53_RS04390 -2.8 -1.9 glycosyltransferase family 2 protein compare
LRK53_RS08430 -2.7 -1.5 30S ribosomal protein THX compare
LRK53_RS14840 -2.7 -1.9 trypsin-like peptidase domain-containing protein compare
LRK53_RS05905 -2.6 -2.5 thymidylate synthase compare
LRK53_RS16635 -2.5 -2.0 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS12005 -2.5 -1.7 RNA polymerase sigma factor RpoE compare
LRK53_RS05555 -2.3 -1.6 NfeD family protein compare
LRK53_RS00405 -2.3 -2.2 trimeric intracellular cation channel family protein compare
LRK53_RS16860 -2.2 -1.4 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS18830 -2.2 -2.6 TraV family lipoprotein compare
LRK53_RS04200 -2.1 -2.2 hypothetical protein compare
LRK53_RS14895 -2.0 -1.4 STAS domain-containing protein compare
LRK53_RS18860 -2.0 -2.1 hypothetical protein compare
LRK53_RS05760 -2.0 -0.9 chemotaxis protein CheW compare
LRK53_RS11140 -1.9 -2.2 hypothetical protein compare
LRK53_RS18120 -1.9 -2.0 energy transducer TonB compare
LRK53_RS11795 -1.9 -2.9 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS18960 -1.9 -1.4 hypothetical protein compare
LRK53_RS06860 -1.8 -3.2 nucleotidyltransferase family protein compare
LRK53_RS14100 -1.8 -3.0 response regulator transcription factor compare
LRK53_RS19155 -1.8 -1.9 hypothetical protein compare
LRK53_RS18155 -1.8 -1.9 hypothetical protein compare
LRK53_RS18770 -1.8 -2.1 hypothetical protein compare
LRK53_RS14365 -1.8 -1.4 hypothetical protein compare
LRK53_RS01745 -1.7 -9.5 TetR/AcrR family transcriptional regulator compare
LRK53_RS02855 -1.7 -1.7 tetratricopeptide repeat protein compare
LRK53_RS05170 -1.7 -2.4 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS10035 -1.7 -0.8 hypothetical protein compare
LRK53_RS06570 -1.7 -1.1 DUF615 domain-containing protein compare
LRK53_RS13770 -1.6 -3.8 protease HtpX compare
LRK53_RS14865 -1.6 -2.4 CBS domain-containing protein compare
LRK53_RS18045 -1.5 -3.0 DUF6429 family protein compare
LRK53_RS14800 -1.5 -6.2 DUF1631 domain-containing protein compare
LRK53_RS01830 -1.4 -1.4 hypothetical protein compare
LRK53_RS08730 -1.4 -2.3 hypothetical protein compare
LRK53_RS09460 -1.4 -2.7 methylisocitrate lyase compare
LRK53_RS03875 -1.4 -2.0 DUF4194 domain-containing protein compare
LRK53_RS07920 -1.3 -3.5 homocysteine S-methyltransferase family protein compare
LRK53_RS14010 -1.3 -2.3 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS13795 -1.3 -1.3 cytochrome c compare
LRK53_RS06545 -1.3 -4.0 TIGR02099 family protein compare
LRK53_RS11915 -1.3 -2.3 cold-shock protein compare
LRK53_RS10200 -1.3 -1.4 TraR/DksA C4-type zinc finger protein compare
LRK53_RS00760 -1.3 -1.4 DUF302 domain-containing protein compare
LRK53_RS15625 -1.3 -5.7 hemolysin family protein compare
LRK53_RS07870 -1.3 -2.9 hypothetical protein compare
LRK53_RS17865 -1.3 -1.6 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS15875 -1.3 -1.1 hypothetical protein compare
LRK53_RS03065 -1.3 -0.9 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS08205 -1.3 -1.4 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS03700 -1.2 -0.7 transcription termination factor Rho compare
LRK53_RS07395 -1.2 -2.0 iron-sulfur cluster assembly accessory protein compare
LRK53_RS19095 -1.2 -2.9 hypothetical protein compare
LRK53_RS07500 -1.2 -1.4 membrane protein insertion efficiency factor YidD compare
LRK53_RS16160 -1.1 -2.6 hypothetical protein compare
LRK53_RS12530 -1.1 -3.1 hypothetical protein compare
LRK53_RS03330 -1.1 -1.3 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS05810 -1.1 -1.9 DUF4097 family beta strand repeat-containing protein compare
LRK53_RS18950 -1.1 -2.3 hypothetical protein compare
LRK53_RS02285 -1.1 -2.3 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS15035 -1.1 -1.6 flagellar biosynthetic protein FliO compare
LRK53_RS03625 -1.1 -1.3 ABC transporter ATP-binding protein compare
LRK53_RS14785 -1.1 -1.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS17100 -1.1 -2.1 proteobacterial dedicated sortase system response regulator compare
LRK53_RS11285 -1.1 -1.1 tRNA-binding protein compare
LRK53_RS11805 -1.1 -1.8 heavy metal translocating P-type ATPase compare
LRK53_RS00155 -1.0 -2.3 GFA family protein compare
LRK53_RS12285 -1.0 -2.2 magnesium transporter compare
LRK53_RS07020 -1.0 -1.4 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS19110 -1.0 -1.4 hypothetical protein compare
LRK53_RS12740 -1.0 -2.4 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS12100 -1.0 -0.7 methyltransferase domain-containing protein compare
LRK53_RS12800 -0.9 -1.6 DUF4190 domain-containing protein compare
LRK53_RS01540 -0.9 -2.3 uroporphyrinogen-III C-methyltransferase compare
LRK53_RS18675 -0.9 -1.6 DNA polymerase Y family protein compare
LRK53_RS04100 -0.9 -1.4 DUF3247 family protein compare
LRK53_RS15865 -0.9 -1.7 hypothetical protein compare
LRK53_RS17460 -0.9 -1.1 alpha/beta hydrolase-fold protein compare
LRK53_RS03185 -0.9 -1.1 S-ribosylhomocysteine lyase compare
LRK53_RS13655 -0.9 -1.6 SCP2 sterol-binding domain-containing protein compare
LRK53_RS02140 -0.9 -2.4 hypothetical protein compare
LRK53_RS12440 -0.9 -1.3 hypothetical protein compare
LRK53_RS15955 -0.9 -1.2 PhzF family phenazine biosynthesis protein compare
LRK53_RS09930 -0.9 -2.6 mercuric ion transporter MerT compare
LRK53_RS05995 -0.9 -5.1 oligosaccharide flippase family protein compare
LRK53_RS00395 -0.9 -1.8 SDR family oxidoreductase compare
LRK53_RS06500 -0.9 -0.9 disulfide bond formation protein B compare
LRK53_RS16290 -0.9 -2.4 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS11255 -0.9 -2.6 DNA oxidative demethylase AlkB compare
LRK53_RS14525 -0.9 -1.7 universal stress protein compare
LRK53_RS03095 -0.9 -1.4 dihydroxy-acid dehydratase compare
LRK53_RS17145 -0.9 -2.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK53_RS00400 -0.9 -3.1 amidohydrolase family protein compare
LRK53_RS04405 -0.9 -5.1 glycosyltransferase compare
LRK53_RS07105 -0.9 -2.0 RNA polymerase-associated protein RapA compare
LRK53_RS02380 -0.8 -2.0 hypothetical protein compare
LRK53_RS00915 -0.8 -0.9 Na+/H+ antiporter subunit C compare
LRK53_RS01570 -0.8 -1.2 DNA polymerase I compare
LRK53_RS07030 -0.8 -3.4 ABC transporter permease compare
LRK53_RS04975 -0.8 -3.5 response regulator compare
LRK53_RS15195 -0.8 -2.0 flagellar biosynthesis anti-sigma factor FlgM compare
LRK53_RS04275 -0.8 -1.1 co-chaperone DjlA compare
LRK53_RS17005 -0.8 -1.2 hypothetical protein compare
LRK53_RS09475 -0.8 -5.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS12875 -0.8 -2.0 HDOD domain-containing protein compare
LRK53_RS04750 -0.8 -1.9 L-serine ammonia-lyase compare
LRK53_RS01530 -0.8 -0.5 YiiD C-terminal domain-containing protein compare
LRK53_RS09290 -0.8 -1.1 hypothetical protein compare
LRK53_RS09350 -0.8 -1.7 LysR family transcriptional regulator compare
LRK53_RS19015 -0.8 -1.3 hypothetical protein compare
LRK53_RS04180 -0.8 -2.2 ABC transporter ATP-binding protein compare
LRK53_RS01445 -0.8 -2.2 ABC transporter permease subunit compare
LRK53_RS11310 -0.8 -3.8 lipopolysaccharide assembly protein LapB compare
LRK53_RS14400 -0.8 -0.6 TetR family transcriptional regulator compare
LRK53_RS13695 -0.8 -1.3 response regulator compare
LRK53_RS17900 -0.8 -0.7 dUTP diphosphatase compare
LRK53_RS00565 -0.8 -1.5 ATP-binding protein compare
LRK53_RS12275 -0.8 -1.3 Smr/MutS family protein compare
LRK53_RS01330 -0.8 -1.9 hypothetical protein compare
LRK53_RS04590 -0.8 -4.0 TetR/AcrR family transcriptional regulator compare
LRK53_RS11470 -0.8 -2.3 Rne/Rng family ribonuclease compare
LRK53_RS13740 -0.8 -2.4 hypothetical protein compare
LRK53_RS02150 -0.8 -1.3 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS15145 -0.8 -1.3 flagellar basal body L-ring protein FlgH compare
LRK53_RS05015 -0.7 -1.6 LacI family DNA-binding transcriptional regulator compare
LRK53_RS16105 -0.7 -1.5 hypothetical protein compare
LRK53_RS17980 -0.7 -3.8 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein compare
LRK53_RS13625 -0.7 -1.0 carbon storage regulator CsrA compare
LRK53_RS12325 -0.7 -3.1 aminopeptidase P family protein compare
LRK53_RS17265 -0.7 -1.9 FTR1 family protein compare
LRK53_RS10160 -0.7 -0.5 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS10050 -0.7 -1.3 DNA-binding domain-containing protein compare
LRK53_RS02405 -0.7 -1.3 YecA family protein compare
LRK53_RS01325 -0.7 -1.7 magnesium-translocating P-type ATPase compare
LRK53_RS13020 -0.7 -0.6 sulfur transferase domain-containing protein compare
LRK53_RS04420 -0.7 -3.6 polysaccharide biosynthesis protein compare
LRK53_RS17450 -0.7 -2.1 FAD/NAD(P)-binding protein compare
LRK53_RS13050 -0.7 -1.9 hypothetical protein compare
LRK53_RS13380 -0.7 -1.0 hypothetical protein compare
LRK53_RS18130 -0.7 -1.3 lytic transglycosylase domain-containing protein compare
LRK53_RS18085 -0.7 -3.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK53_RS08385 -0.7 -2.7 efflux transporter outer membrane subunit compare
LRK53_RS06035 -0.7 -0.6 helix-turn-helix domain-containing protein compare
LRK53_RS10295 -0.7 -2.2 YCF48-related protein compare
LRK53_RS18080 -0.7 -2.5 glucose-6-phosphate isomerase compare
LRK53_RS09315 -0.7 -1.2 pseudouridine synthase compare
LRK53_RS00560 -0.7 -3.7 ABC transporter ATP-binding protein/permease compare
LRK53_RS06235 -0.7 -2.2 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
LRK53_RS04305 -0.7 -1.8 hypothetical protein compare
LRK53_RS09340 -0.7 -1.4 hypothetical protein compare
LRK53_RS17315 -0.7 -2.6 MgtC/SapB family protein compare
LRK53_RS15140 -0.7 -2.0 flagellar basal body P-ring protein FlgI compare
LRK53_RS12860 -0.7 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK53_RS05835 -0.7 -4.0 response regulator transcription factor compare
LRK53_RS18990 -0.7 -3.0 hypothetical protein compare
LRK53_RS16985 -0.7 -1.6 indole-3-glycerol phosphate synthase TrpC compare
LRK53_RS04695 -0.7 -2.6 homoserine O-succinyltransferase compare
LRK53_RS02335 -0.7 -0.8 hypothetical protein compare
LRK53_RS10985 -0.6 -1.6 phosphatase PAP2 family protein compare
LRK53_RS11110 -0.6 -2.9 MFS transporter compare
LRK53_RS02270 -0.6 -2.1 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS06560 -0.6 -1.6 hypothetical protein compare
LRK53_RS02455 -0.6 -1.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS05395 -0.6 -2.0 transcriptional regulator NrdR compare
LRK53_RS03370 -0.6 -0.9 YifB family Mg chelatase-like AAA ATPase compare
LRK53_RS01490 -0.6 -2.7 glutathionylspermidine synthase family protein compare
LRK53_RS00075 -0.6 -2.4 response regulator transcription factor compare
LRK53_RS07860 -0.6 -1.6 RNA polymerase sigma factor compare
LRK53_RS07085 -0.6 -1.4 YggS family pyridoxal phosphate-dependent enzyme compare
LRK53_RS16195 -0.6 -2.1 Co2+/Mg2+ efflux protein ApaG compare
LRK53_RS01565 -0.6 -2.2 hypothetical protein compare
LRK53_RS01095 -0.6 -2.9 lipid A biosynthesis acyltransferase compare
LRK53_RS14515 -0.6 -3.0 cyclic nucleotide-binding domain-containing protein compare
LRK53_RS15450 -0.6 -2.1 LysM peptidoglycan-binding domain-containing protein compare
LRK53_RS07635 -0.6 -0.8 FUSC family protein compare
LRK53_RS09865 -0.6 -1.8 thioesterase compare
LRK53_RS04840 -0.6 -2.2 DedA family protein/thiosulfate sulfurtransferase GlpE compare
LRK53_RS11035 -0.6 -0.8 major capsid protein compare
LRK53_RS06845 -0.6 -2.0 preprotein translocase subunit YajC compare
LRK53_RS00150 -0.6 -1.8 hypothetical protein compare
LRK53_RS13830 -0.6 -1.6 hypothetical protein compare
LRK53_RS01230 -0.6 -1.5 hypothetical protein compare
LRK53_RS15705 -0.6 -3.1 RNA polymerase factor sigma-54 compare
LRK53_RS05470 -0.6 -2.0 hypothetical protein compare
LRK53_RS02250 -0.6 -2.7 phosphotransferase compare
LRK53_RS11780 -0.6 -2.0 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS07095 -0.6 -2.5 rhomboid family intramembrane serine protease compare
LRK53_RS04860 -0.6 -1.4 transposase compare
LRK53_RS11190 -0.6 -1.1 type IV pilus biogenesis/stability protein PilW compare
LRK53_RS12605 -0.6 -1.1 hypothetical protein compare
LRK53_RS18125 -0.6 -0.8 hypothetical protein compare
LRK53_RS03035 -0.6 -2.3 8-amino-7-oxononanoate synthase compare
LRK53_RS12260 -0.6 -3.3 VTT domain-containing protein compare
LRK53_RS15720 -0.6 -3.0 RNase adapter RapZ compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; biofilm sample experiments