Experiment set2S160 for Rhodanobacter sp000427505 FW510-R12

Compare to:

Biofilm; Day2; SGW; pH7

200 most detrimental genes:

  gene name fitness t score description  
LRK53_RS01235 +2.0 3.9 monovalent cation:proton antiporter-2 (CPA2) family protein compare
LRK53_RS03635 +1.3 1.5 50S ribosomal protein L33 compare
LRK53_RS16900 +1.2 3.4 ribose-5-phosphate isomerase RpiA compare
LRK53_RS14520 +1.2 1.6 GNAT family N-acetyltransferase compare
LRK53_RS07695 +1.2 2.0 enoyl-CoA hydratase-related protein compare
LRK53_RS05060 +1.1 1.6 hypothetical protein compare
LRK53_RS14735 +1.0 1.3 copper-containing nitrite reductase compare
LRK53_RS05765 +1.0 2.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK53_RS12885 +1.0 1.2 GNAT family N-acetyltransferase compare
LRK53_RS14645 +1.0 2.2 molybdopterin molybdotransferase MoeA compare
LRK53_RS05465 +1.0 2.7 hemin uptake protein HemP compare
LRK53_RS18445 +0.9 1.7 hypothetical protein compare
LRK53_RS12830 +0.9 1.5 YkgJ family cysteine cluster protein compare
LRK53_RS07200 +0.9 2.7 hypothetical protein compare
LRK53_RS15060 +0.9 0.7 flagellar export protein FliJ compare
LRK53_RS18025 +0.9 1.0 hypothetical protein compare
LRK53_RS09780 +0.9 1.4 tRNA-Gly compare
LRK53_RS18390 +0.9 1.4 hypothetical protein compare
LRK53_RS03160 +0.8 1.7 homoserine kinase compare
LRK53_RS09100 +0.8 2.3 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK53_RS00975 +0.8 1.3 hypothetical protein compare
LRK53_RS14670 +0.8 1.6 purine-nucleoside phosphorylase compare
LRK53_RS09090 +0.8 5.7 polyribonucleotide nucleotidyltransferase compare
LRK53_RS11005 +0.8 1.9 Tn3 family resolvase compare
LRK53_RS03545 +0.8 0.7 DUF2249 domain-containing protein compare
LRK53_RS08665 +0.8 2.2 hypothetical protein compare
LRK53_RS02945 +0.8 5.1 phosphoribosylamine--glycine ligase compare
LRK53_RS00935 +0.8 1.9 monovalent cation/H(+) antiporter subunit G compare
LRK53_RS08695 +0.8 5.3 amidophosphoribosyltransferase compare
LRK53_RS13780 +0.8 2.2 acetoacetyl-CoA reductase compare
LRK53_RS06025 +0.8 1.3 nucleotidyltransferase domain-containing protein compare
LRK53_RS14665 +0.8 2.2 molybdopterin-synthase adenylyltransferase MoeB compare
LRK53_RS04505 +0.7 1.8 met regulon transcriptional regulator MetJ compare
LRK53_RS12880 +0.7 1.6 hypothetical protein compare
LRK53_RS00940 +0.7 0.5 hypothetical protein compare
LRK53_RS17615 +0.7 3.2 UBP-type zinc finger domain-containing protein compare
LRK53_RS08455 +0.7 1.5 ATP phosphoribosyltransferase compare
LRK53_RS02765 +0.7 2.9 PilN domain-containing protein compare
LRK53_RS10250 +0.7 2.3 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS04770 +0.7 3.0 YceI family protein compare
LRK53_RS18855 +0.7 2.7 hypothetical protein compare
LRK53_RS07600 +0.7 0.8 ABC transporter ATP-binding protein compare
LRK53_RS15730 +0.7 1.0 HPr family phosphocarrier protein compare
LRK53_RS04130 +0.7 1.6 universal stress protein compare
LRK53_RS13705 +0.7 1.5 response regulator compare
LRK53_RS00380 +0.7 0.6 DUF308 domain-containing protein compare
LRK53_RS09240 +0.7 1.0 DUF4386 domain-containing protein compare
LRK53_RS15175 +0.7 1.3 flagellar basal body rod protein FlgB compare
LRK53_RS15460 +0.7 2.1 FHA domain-containing protein compare
LRK53_RS03360 +0.7 1.5 P-II family nitrogen regulator compare
LRK53_RS18400 +0.7 1.5 hypothetical protein compare
LRK53_RS12265 +0.7 1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK53_RS00485 +0.7 1.9 glycosyltransferase compare
LRK53_RS10085 +0.6 1.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS14435 +0.6 1.1 hypothetical protein compare
LRK53_RS15185 +0.6 0.8 methyl-accepting chemotaxis protein compare
LRK53_RS17150 +0.6 1.9 ferredoxin family protein compare
LRK53_RS16050 +0.6 2.1 hypothetical protein compare
LRK53_RS07250 +0.6 2.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK53_RS17105 +0.6 3.2 ribulose-phosphate 3-epimerase compare
LRK53_RS13670 +0.6 1.3 acetyl-CoA C-acetyltransferase compare
LRK53_RS07420 +0.6 1.5 DNA repair protein RadA compare
LRK53_RS14960 +0.6 1.1 DUF2802 domain-containing protein compare
LRK53_RS08795 +0.6 1.2 MBL fold metallo-hydrolase compare
LRK53_RS04440 +0.6 2.4 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS14190 +0.6 0.9 MAPEG family protein compare
LRK53_RS07025 +0.6 0.6 ABC transporter ATP-binding protein compare
LRK53_RS14455 +0.6 1.0 ATP-binding protein compare
LRK53_RS07245 +0.6 0.8 ribosome silencing factor compare
LRK53_RS04310 +0.6 1.0 YdcH family protein compare
LRK53_RS17310 +0.6 1.5 VOC family protein compare
LRK53_RS03970 +0.6 1.4 hypothetical protein compare
LRK53_RS12280 +0.6 1.3 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS00740 +0.6 1.1 MarR family transcriptional regulator compare
LRK53_RS10680 +0.6 1.0 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS00345 +0.6 1.4 sorbitol dehydrogenase family protein compare
LRK53_RS18825 +0.6 1.3 hypothetical protein compare
LRK53_RS16995 +0.6 1.0 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS09830 +0.6 1.3 phosphoglycerate mutase compare
LRK53_RS05240 +0.6 2.0 DUF3501 family protein compare
LRK53_RS19145 +0.6 2.5 hypothetical protein compare
LRK53_RS11215 +0.5 2.0 acetyl-CoA C-acyltransferase compare
LRK53_RS14135 +0.5 2.0 putative cation transport regulator ChaB compare
LRK53_RS06990 +0.5 1.8 hypothetical protein compare
LRK53_RS05200 +0.5 1.3 type IV pilus modification protein PilV compare
LRK53_RS01200 +0.5 1.5 hypothetical protein compare
LRK53_RS01090 +0.5 1.1 D-aminoacyl-tRNA deacylase compare
LRK53_RS12845 +0.5 1.8 class I SAM-dependent methyltransferase compare
LRK53_RS09110 +0.5 2.3 GtrA family protein compare
LRK53_RS18995 +0.5 1.1 hypothetical protein compare
LRK53_RS09900 +0.5 1.5 transcriptional repressor LexA compare
LRK53_RS17990 +0.5 1.2 energy transducer TonB compare
LRK53_RS18185 +0.5 2.3 PRTRC system protein E compare
LRK53_RS12245 +0.5 1.1 ribosome assembly RNA-binding protein YhbY compare
LRK53_RS18925 +0.5 1.7 hypothetical protein compare
LRK53_RS18295 +0.5 1.0 hypothetical protein compare
LRK53_RS02340 +0.5 1.2 isopentenyl-diphosphate Delta-isomerase compare
LRK53_RS00430 +0.5 1.0 conjugal transfer protein TraR compare
LRK53_RS17110 +0.5 4.0 transketolase compare
LRK53_RS16165 +0.5 1.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS04640 +0.5 0.8 helix-turn-helix domain-containing protein compare
LRK53_RS17380 +0.5 2.3 zinc-dependent peptidase compare
LRK53_RS03815 +0.5 2.0 thiamine phosphate synthase compare
LRK53_RS14715 +0.5 1.2 zinc-binding protein compare
LRK53_RS01155 +0.5 1.8 hypothetical protein compare
LRK53_RS03460 +0.5 1.6 GNAT family N-acetyltransferase compare
LRK53_RS08250 +0.5 1.1 HIT family protein compare
LRK53_RS11820 +0.5 2.0 phospholipase D-like domain-containing protein compare
LRK53_RS09925 +0.5 1.0 Hg(II)-responsive transcriptional regulator compare
LRK53_RS05295 +0.5 4.2 phosphoribosylformylglycinamidine synthase compare
LRK53_RS03870 +0.5 1.5 DUF3375 domain-containing protein compare
LRK53_RS14215 +0.5 1.1 hypothetical protein compare
LRK53_RS17135 +0.5 1.7 pyruvate kinase compare
LRK53_RS15170 +0.5 1.5 flagellar basal body rod protein FlgC compare
LRK53_RS10060 +0.5 1.8 sigma-70 family RNA polymerase sigma factor compare
LRK53_RS03235 +0.5 0.8 glycerophosphodiester phosphodiesterase compare
LRK53_RS02125 +0.5 2.7 DUF3987 domain-containing protein compare
LRK53_RS18600 +0.5 2.0 MFS transporter compare
LRK53_RS12525 +0.5 2.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
LRK53_RS07280 +0.5 0.8 YkgJ family cysteine cluster protein compare
LRK53_RS16735 +0.4 2.1 ATP-dependent DNA helicase RecG compare
LRK53_RS13910 +0.4 2.0 NAD(P)-dependent oxidoreductase compare
LRK53_RS14035 +0.4 1.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
LRK53_RS18350 +0.4 2.2 ATP-binding protein compare
LRK53_RS00945 +0.4 0.7 helix-turn-helix domain-containing protein compare
LRK53_RS11610 +0.4 1.5 low molecular weight phosphotyrosine protein phosphatase compare
LRK53_RS17220 +0.4 1.5 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS03590 +0.4 1.6 thymidine kinase compare
LRK53_RS01770 +0.4 2.0 2OG-Fe(II) oxygenase compare
LRK53_RS04685 +0.4 2.1 2OG-Fe dioxygenase family protein compare
LRK53_RS02295 +0.4 1.4 ribokinase compare
LRK53_RS15025 +0.4 1.9 flagellar biosynthesis protein FliQ compare
LRK53_RS07190 +0.4 2.5 PepSY domain-containing protein compare
LRK53_RS00895 +0.4 1.7 hypothetical protein compare
LRK53_RS06615 +0.4 1.8 NYN domain-containing protein compare
LRK53_RS08770 +0.4 1.8 GIY-YIG nuclease family protein compare
LRK53_RS10830 +0.4 2.4 hypothetical protein compare
LRK53_RS08140 +0.4 1.0 hypothetical protein compare
LRK53_RS17535 +0.4 2.7 endonuclease/exonuclease/phosphatase family protein compare
LRK53_RS06870 +0.4 0.5 SUF system Fe-S cluster assembly regulator compare
LRK53_RS01625 +0.4 1.6 TlpA family protein disulfide reductase compare
LRK53_RS05265 +0.4 0.5 hypothetical protein compare
LRK53_RS09330 +0.4 1.5 PilZ domain-containing protein compare
LRK53_RS03340 +0.4 1.8 glutathione S-transferase family protein compare
LRK53_RS02005 +0.4 2.9 DISARM system phospholipase D-like protein DrmC compare
LRK53_RS18810 +0.4 1.9 S26 family signal peptidase compare
LRK53_RS02070 +0.4 1.7 hypothetical protein compare
LRK53_RS13965 +0.4 1.6 NAD(P)H-dependent oxidoreductase compare
LRK53_RS16030 +0.4 2.2 SET domain-containing protein-lysine N-methyltransferase compare
LRK53_RS09520 +0.4 0.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS02485 +0.4 1.5 hypothetical protein compare
LRK53_RS01105 +0.4 1.8 hypothetical protein compare
LRK53_RS16200 +0.4 1.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK53_RS17885 +0.4 0.6 orotate phosphoribosyltransferase compare
LRK53_RS19125 +0.4 1.2 GPI inositol-deacylase compare
LRK53_RS10215 +0.4 2.2 cyclopropane fatty acyl phospholipid synthase compare
LRK53_RS08575 +0.4 1.1 RNA-binding S4 domain-containing protein compare
LRK53_RS09235 +0.4 1.8 DUF6326 family protein compare
LRK53_RS10095 +0.4 1.5 hypothetical protein compare
LRK53_RS02075 +0.4 1.1 hypothetical protein compare
LRK53_RS01995 +0.4 2.4 ATP-binding protein compare
LRK53_RS16055 +0.4 1.3 hypothetical protein compare
LRK53_RS15100 +0.4 0.7 flagellar protein FliT compare
LRK53_RS08100 +0.4 0.7 MBL fold metallo-hydrolase compare
LRK53_RS07335 +0.4 1.3 hypothetical protein compare
LRK53_RS13760 +0.4 1.5 hypothetical protein compare
LRK53_RS08705 +0.4 1.9 ferritin-like domain-containing protein compare
LRK53_RS00720 +0.4 0.8 acyloxyacyl hydrolase compare
LRK53_RS10500 +0.4 1.4 transposase compare
LRK53_RS02260 +0.4 2.0 glycosyltransferase family 2 protein compare
LRK53_RS01610 +0.4 2.0 four helix bundle protein compare
LRK53_RS05390 +0.4 2.4 serine hydroxymethyltransferase compare
LRK53_RS01020 +0.4 2.2 SseB family protein compare
LRK53_RS04435 +0.4 2.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
LRK53_RS15150 +0.4 1.2 flagellar basal-body rod protein FlgG compare
LRK53_RS07310 +0.4 1.1 DEAD/DEAH box helicase compare
LRK53_RS17185 +0.4 0.7 copper-containing nitrite reductase compare
LRK53_RS13395 +0.4 1.6 cupredoxin domain-containing protein compare
LRK53_RS15820 +0.4 0.4 metal/formaldehyde-sensitive transcriptional repressor compare
LRK53_RS13415 +0.4 0.6 DUF2059 domain-containing protein compare
LRK53_RS18815 +0.4 1.1 hypothetical protein compare
LRK53_RS05065 +0.4 1.5 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS12420 +0.4 1.1 SgcJ/EcaC family oxidoreductase compare
LRK53_RS02315 +0.4 1.5 tyrosine recombinase XerC compare
LRK53_RS15660 +0.4 0.9 phosphoribosylglycinamide formyltransferase compare
LRK53_RS15020 +0.4 1.3 flagellar biosynthetic protein FliR compare
LRK53_RS13165 +0.4 1.2 alkyl hydroperoxide reductase compare
LRK53_RS01920 +0.4 2.0 regulatory signaling modulator protein AmpE compare
LRK53_RS18425 +0.4 1.5 hypothetical protein compare
LRK53_RS13925 +0.4 0.7 NrsF family protein compare
LRK53_RS04580 +0.4 0.4 sigma-70 family RNA polymerase sigma factor compare
LRK53_RS15055 +0.4 1.2 flagellar hook-length control protein FliK compare
LRK53_RS13045 +0.4 1.3 hypothetical protein compare
LRK53_RS19100 +0.4 1.0 hypothetical protein compare
LRK53_RS06530 +0.4 1.7 mismatch-specific DNA-glycosylase compare
LRK53_RS02030 +0.4 2.4 phospholipase D family protein compare
LRK53_RS10290 +0.4 1.6 4-hydroxy-2-oxovalerate aldolase compare
LRK53_RS09805 +0.4 1.3 TraB/GumN family protein compare
LRK53_RS08670 +0.4 0.8 heavy metal-responsive transcriptional regulator compare
LRK53_RS08415 +0.3 1.2 transcriptional repressor compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; biofilm sample experiments