Experiment set2S16 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Guanine 0.6617 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS01590 -1.6 -2.2 site-specific DNA-methyltransferase compare
A4249_RS09265 -1.5 -2.5 exodeoxyribonuclease VII large subunit compare
A4249_RS01460 -1.5 -2.6 signal peptide peptidase SppA compare
A4249_RS13805 -1.4 -1.1 HAD family hydrolase compare
A4249_RS10965 -1.3 -1.4 response regulator compare
A4249_RS02325 -1.2 -1.6 23S ribosomal RNA compare
A4249_RS16585 -1.0 -2.1 hypothetical protein compare
A4249_RS04215 -1.0 -1.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS15110 -1.0 -2.2 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS10990 -0.9 -1.5 ATP-dependent protease ATPase subunit HslU compare
A4249_RS02865 -0.9 -1.7 arsenate reductase family protein compare
A4249_RS09035 -0.8 -1.0 redox-regulated ATPase YchF compare
A4249_RS15360 -0.8 -1.5 DNA replication/repair protein RecF compare
A4249_RS16455 -0.8 -1.0 helix-turn-helix transcriptional regulator compare
A4249_RS06180 -0.8 -3.0 transcriptional repressor LexA compare
A4249_RS07320 -0.8 -1.9 hypothetical protein compare
A4249_RS16085 -0.8 -1.2 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS10360 -0.8 -1.5 HAMP domain-containing sensor histidine kinase compare
A4249_RS09350 -0.8 -2.1 PGPGW domain-containing protein compare
A4249_RS08300 -0.8 -1.4 cold-shock protein compare
A4249_RS13190 -0.8 -2.3 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS00270 -0.8 -0.9 very short patch repair endonuclease compare
A4249_RS13560 -0.7 -1.6 glutaredoxin 3 compare
A4249_RS07195 -0.7 -1.1 hypothetical protein compare
A4249_RS16725 -0.7 -1.3 hypothetical protein compare
A4249_RS03060 -0.7 -1.4 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS08510 -0.7 -2.0 hypothetical protein compare
A4249_RS05620 -0.7 -3.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS09405 -0.6 -1.4 beta-N-acetylhexosaminidase compare
A4249_RS06525 -0.6 -1.0 SCP2 sterol-binding domain-containing protein compare
A4249_RS08025 -0.6 -1.5 DUF2155 domain-containing protein compare
A4249_RS00290 -0.6 -1.1 histidine phosphatase family protein compare
A4249_RS07995 -0.6 -1.2 type II 3-dehydroquinate dehydratase compare
A4249_RS10835 -0.6 -2.4 c-type cytochrome biogenesis protein CcmI compare
A4249_RS03370 -0.6 -0.8 copper-binding protein compare
A4249_RS07145 -0.6 -1.6 hypothetical protein compare
A4249_RS04450 -0.6 -1.6 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS08855 -0.6 -1.6 L,D-transpeptidase family protein compare
A4249_RS01905 -0.6 -0.9 TrbC/VirB2 family protein compare
A4249_RS13125 -0.6 -1.6 ribonuclease PH compare
A4249_RS11930 -0.6 -1.6 YcxB family protein compare
A4249_RS00700 -0.6 -1.8 hypothetical protein compare
A4249_RS13200 -0.6 -1.5 thiamine pyrophosphate-dependent enzyme compare
A4249_RS12825 -0.6 -1.2 SDR family oxidoreductase compare
A4249_RS15470 -0.6 -1.3 cold-shock protein compare
A4249_RS04220 -0.6 -1.3 low molecular weight phosphotyrosine protein phosphatase compare
A4249_RS03190 -0.5 -1.4 ATPase, T2SS/T4P/T4SS family compare
A4249_RS13625 -0.5 -2.0 alpha-ketoglutarate-dependent dioxygenase AlkB compare
A4249_RS06165 -0.5 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS13060 -0.5 -4.3 AGE family epimerase/isomerase compare
A4249_RS08375 -0.5 -1.1 hypothetical protein compare
A4249_RS10430 -0.5 -3.2 S1/P1 Nuclease compare
A4249_RS03300 -0.5 -1.3 copper resistance protein CopC compare
A4249_RS01090 -0.5 -1.7 sigma-70 family RNA polymerase sigma factor compare
A4249_RS08535 -0.5 -0.8 flagellar assembly protein FliX compare
A4249_RS00425 -0.5 -2.3 VOC family protein compare
A4249_RS12980 -0.5 -4.4 GDP-mannose 4,6-dehydratase compare
A4249_RS07610 -0.5 -0.9 methyltransferase type 11 compare
A4249_RS03440 -0.5 -1.4 hypothetical protein compare
A4249_RS00505 -0.5 -1.7 GNAT family N-acetyltransferase compare
A4249_RS02780 -0.5 -2.0 DMT family transporter compare
A4249_RS12085 -0.5 -1.2 DUF883 family protein compare
A4249_RS04635 -0.5 -4.1 cyclic nucleotide-binding domain-containing protein compare
A4249_RS10390 -0.5 -1.1 translation elongation factor 4 compare
A4249_RS07000 -0.5 -1.8 hypothetical protein compare
A4249_RS01415 -0.5 -0.5 phage Gp37/Gp68 family protein compare
A4249_RS15570 -0.4 -1.7 chemotaxis protein CheW compare
A4249_RS03845 -0.4 -1.3 TerC family protein compare
A4249_RS09195 -0.4 -1.7 TldD/PmbA family protein compare
A4249_RS08775 -0.4 -1.5 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
A4249_RS00215 -0.4 -1.4 bifunctional diguanylate cyclase/phosphodiesterase compare
A4249_RS05165 -0.4 -1.2 Hpt domain-containing protein compare
A4249_RS04390 -0.4 -1.7 ABC transporter ATP-binding protein compare
A4249_RS07405 -0.4 -1.8 hypothetical protein compare
A4249_RS15345 -0.4 -1.4 DUF6491 family protein compare
A4249_RS16590 -0.4 -1.4 hypothetical protein compare
A4249_RS07170 -0.4 -2.4 hypothetical protein compare
A4249_RS01015 -0.4 -0.9 CoA ester lyase compare
A4249_RS15050 -0.4 -1.8 lysozyme inhibitor LprI family protein compare
A4249_RS02645 -0.4 -0.5 cobalamin biosynthesis protein CbiG compare
A4249_RS11125 -0.4 -3.6 glycosyltransferase family 9 protein compare
A4249_RS06435 -0.4 -0.7 tRNA-Asp compare
A4249_RS14155 -0.4 -1.7 thioredoxin compare
A4249_RS14360 -0.4 -1.0 pilus assembly protein compare
A4249_RS09275 -0.4 -1.5 DUF3035 domain-containing protein compare
A4249_RS16165 -0.4 -1.6 homoserine O-succinyltransferase compare
A4249_RS16095 -0.4 -1.1 Hsp20 family protein compare
A4249_RS02635 -0.4 -0.8 RNA polymerase sigma factor compare
A4249_RS13030 -0.4 -3.0 glycosyltransferase family 1 protein compare
A4249_RS14900 -0.4 -2.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS11800 -0.4 -2.0 DUF3363 domain-containing protein compare
A4249_RS13045 -0.4 -3.3 glycosyltransferase family 1 protein compare
A4249_RS01000 -0.4 -2.3 DoxX family protein compare
A4249_RS08495 -0.4 -0.7 Na+/H+ antiporter subunit E compare
A4249_RS00285 -0.4 -1.2 DUF952 domain-containing protein compare
A4249_RS07395 -0.4 -1.0 hypothetical protein compare
A4249_RS13025 -0.4 -3.0 hypothetical protein compare
A4249_RS11455 -0.4 -1.6 hypothetical protein compare
A4249_RS12260 -0.4 -0.9 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS07760 -0.4 -2.3 A24 family peptidase compare
A4249_RS05625 -0.4 -2.9 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS08270 -0.4 -1.3 DedA family protein compare
A4249_RS02165 -0.4 -0.5 c-type cytochrome compare
A4249_RS16155 -0.4 -0.6 tRNA-Glu compare
A4249_RS09250 -0.4 -1.3 murein L,D-transpeptidase catalytic domain family protein compare
A4249_RS12230 -0.4 -2.0 hypothetical protein compare
A4249_RS10630 -0.3 -1.4 FAD:protein FMN transferase compare
A4249_RS16515 -0.3 -1.8 hypothetical protein compare
A4249_RS00925 -0.3 -0.9 multidrug efflux SMR transporter compare
A4249_RS16950 -0.3 -1.2 flavin reductase family protein compare
A4249_RS10160 -0.3 -1.2 HK97 family phage prohead protease compare
A4249_RS15455 -0.3 -0.7 Rieske (2Fe-2S) protein compare
A4249_RS08560 -0.3 -2.1 ABC-F family ATP-binding cassette domain-containing protein compare
A4249_RS11965 -0.3 -1.7 cupin domain-containing protein compare
A4249_RS05245 -0.3 -1.9 arylesterase compare
A4249_RS05745 -0.3 -1.3 ImmA/IrrE family metallo-endopeptidase compare
A4249_RS13545 -0.3 -1.2 Flp family type IVb pilin compare
A4249_RS13305 -0.3 -2.0 YraN family protein compare
A4249_RS02345 -0.3 -1.6 alpha/beta hydrolase compare
A4249_RS01325 -0.3 -0.6 hypothetical protein compare
A4249_RS07865 -0.3 -1.3 RluA family pseudouridine synthase compare
A4249_RS14840 -0.3 -1.4 carboxynorspermidine decarboxylase compare
A4249_RS04395 -0.3 -1.2 polyprenyl synthetase family protein compare
A4249_RS01145 -0.3 -2.1 OsmC family protein compare
A4249_RS05595 -0.3 -1.0 dicarboxylate/amino acid:cation symporter compare
A4249_RS01075 -0.3 -1.3 DNA-binding domain-containing protein compare
A4249_RS13070 -0.3 -2.3 phosphomannomutase/phosphoglucomutase compare
A4249_RS06855 -0.3 -1.4 hypothetical protein compare
A4249_RS04795 -0.3 -1.2 CinA family protein compare
A4249_RS08745 -0.3 -1.4 hypothetical protein compare
A4249_RS09160 -0.3 -0.9 MmcQ/YjbR family DNA-binding protein compare
A4249_RS13035 -0.3 -1.8 hypothetical protein compare
A4249_RS08470 -0.3 -1.5 RNA methyltransferase compare
A4249_RS04495 -0.3 -1.1 organic hydroperoxide resistance protein compare
A4249_RS13195 -0.3 -1.2 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS05960 -0.3 -0.9 MerR family transcriptional regulator compare
A4249_RS15660 -0.3 -1.0 hypothetical protein compare
A4249_RS12905 -0.3 -1.1 DNA repair putative endonuclease MmcB compare
A4249_RS15000 -0.3 -1.3 endonuclease III compare
A4249_RS04240 -0.3 -1.7 DNA-processing protein DprA compare
A4249_RS15055 -0.3 -0.9 SprT family zinc-dependent metalloprotease compare
A4249_RS01980 -0.3 -1.9 helix-turn-helix domain-containing protein compare
A4249_RS06780 -0.3 -0.6 YicC family protein compare
A4249_RS00895 -0.3 -0.7 DUF1476 domain-containing protein compare
A4249_RS00830 -0.3 -1.1 hypothetical protein compare
A4249_RS11810 -0.3 -2.0 damage-inducible protein compare
A4249_RS02800 -0.3 -1.6 aminotransferase class IV compare
A4249_RS10185 -0.3 -1.6 hypothetical protein compare
A4249_RS07205 -0.3 -2.0 hypothetical protein compare
A4249_RS08725 -0.3 -1.3 hypothetical protein compare
A4249_RS14780 -0.3 -1.2 NepR family anti-sigma factor compare
A4249_RS16695 -0.3 -1.0 potassium-transporting ATPase subunit F compare
A4249_RS04275 -0.3 -1.7 hypothetical protein compare
A4249_RS02735 -0.3 -1.0 flagellin compare
A4249_RS00015 -0.3 -1.8 CsbD family protein compare
A4249_RS14695 -0.3 -1.1 transcription elongation factor GreA compare
A4249_RS12330 -0.3 -1.3 hypothetical protein compare
A4249_RS00765 -0.3 -2.2 formate-dependent phosphoribosylglycinamide formyltransferase compare
A4249_RS10115 -0.3 -0.9 phage tail tape measure protein compare
A4249_RS00810 -0.3 -1.8 glycosyltransferase family 4 protein compare
A4249_RS01190 -0.3 -0.6 hypothetical protein compare
A4249_RS00080 -0.3 -1.3 DUF3298 and DUF4163 domain-containing protein compare
A4249_RS03175 -0.3 -1.3 ParB N-terminal domain-containing protein compare
A4249_RS14605 -0.3 -1.5 glycosyltransferase family 2 protein compare
A4249_RS12915 -0.3 -1.1 hypothetical protein compare
A4249_RS11650 -0.3 -1.2 mercuric transporter MerT family protein compare
A4249_RS07080 -0.3 -0.8 hypothetical protein compare
A4249_RS07400 -0.3 -1.8 hypothetical protein compare
A4249_RS05460 -0.3 -1.4 iron ABC transporter permease compare
A4249_RS16770 -0.3 -1.4 hypothetical protein compare
A4249_RS14830 -0.3 -0.5 peptidoglycan DD-metalloendopeptidase family protein compare
A4249_RS02870 -0.3 -1.1 translocation/assembly module TamB domain-containing protein compare
A4249_RS07530 -0.3 -1.7 hypothetical protein compare
A4249_RS13535 -0.3 -1.2 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS02685 -0.3 -1.3 CoA pyrophosphatase compare
A4249_RS00710 -0.3 -1.2 hypothetical protein compare
A4249_RS03575 -0.3 -1.4 LysR family transcriptional regulator compare
A4249_RS05260 -0.3 -1.9 hemerythrin domain-containing protein compare
A4249_RS13480 -0.3 -1.1 protein-export chaperone SecB compare
A4249_RS10910 -0.3 -1.5 hypothetical protein compare
A4249_RS15875 -0.3 -1.1 hypothetical protein compare
A4249_RS11865 -0.3 -2.0 tyrosine-type recombinase/integrase compare
A4249_RS04475 -0.2 -0.6 response regulator transcription factor compare
A4249_RS03640 -0.2 -1.9 glutathione S-transferase family protein compare
A4249_RS12830 -0.2 -0.7 YkvA family protein compare
A4249_RS16655 -0.2 -1.3 hypothetical protein compare
A4249_RS13620 -0.2 -1.5 dienelactone hydrolase family protein compare
A4249_RS04870 -0.2 -1.3 NAD(P)H:quinone oxidoreductase compare
A4249_RS12860 -0.2 -0.5 DUF350 domain-containing protein compare
A4249_RS02785 -0.2 -0.9 DUF1003 domain-containing protein compare
A4249_RS07500 -0.2 -2.0 site-specific DNA-methyltransferase compare
A4249_RS16325 -0.2 -1.0 helix-turn-helix transcriptional regulator compare
A4249_RS14365 -0.2 -1.7 TadG family pilus assembly protein compare
A4249_RS09635 -0.2 -1.7 flagellar basal body L-ring protein FlgH compare
A4249_RS10340 -0.2 -0.8 DUF6456 domain-containing protein compare
A4249_RS15560 -0.2 -0.6 response regulator compare
A4249_RS08405 -0.2 -0.9 TIGR01841 family phasin compare
A4249_RS00760 -0.2 -1.7 carbon starvation CstA family protein compare
A4249_RS04310 -0.2 -0.7 hypothetical protein compare
A4249_RS02105 -0.2 -1.8 methyl-accepting chemotaxis protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Guanine across organisms