Experiment set2S159 for Escherichia coli ECRC102

Compare to:

L-Arabinose

200 most important genes:

  gene name fitness t score description  
NIAGMN_08575 leuC1 -5.4 -15.5 3-isopropylmalate dehydratase large subunit 1 compare
NIAGMN_22455 hisC -5.3 -2.7 histidinol-phosphate transaminase compare
NIAGMN_03210 serC -5.2 -2.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
NIAGMN_08570 leuB -5.2 -14.9 3-isopropylmalate dehydrogenase compare
NIAGMN_03915 -5.1 -0.9 hypothetical protein compare
NIAGMN_17225 serA -5.1 -15.7 phosphoglycerate dehydrogenase compare
NIAGMN_01070 cedA -4.9 -0.9 cell division activator CedA compare
NIAGMN_06550 secD -4.9 -0.9 Protein translocase subunit SecD compare
NIAGMN_02955 ompA -4.9 -14.2 outer membrane protein A compare
NIAGMN_09615 Leu_trna -4.9 -1.6 tRNA-Leu(caa) compare
NIAGMN_04610 -4.8 -0.9 holin compare
NIAGMN_03205 aroA -4.7 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
NIAGMN_08950 thrC -4.7 -7.3 threonine synthase compare
NIAGMN_19420 iscX -4.6 -0.8 Fe-S cluster assembly protein IscX compare
NIAGMN_22450 hisB -4.6 -2.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
NIAGMN_10080 purA -4.6 -18.0 adenylosuccinate synthase compare
NIAGMN_08195 dksA -4.5 -8.2 RNA polymerase-binding protein DksA compare
NIAGMN_26720 pyrF -4.5 -2.2 orotidine-5'-phosphate decarboxylase compare
NIAGMN_11420 metF -4.5 -15.7 methylenetetrahydrofolate reductase compare
NIAGMN_26595 puuB -4.4 -0.8 gamma-glutamylputrescine oxidase compare
NIAGMN_04870 tolQ -4.4 -1.4 Tol-Pal system protein TolQ compare
NIAGMN_08580 leuD -4.4 -6.8 3-isopropylmalate dehydratase small subunit compare
NIAGMN_14885 aroB -4.3 -10.5 3-dehydroquinate synthase compare
NIAGMN_09050 serB -4.3 -7.2 phosphoserine phosphatase compare
NIAGMN_04975 sucA -4.2 -1.1 2-oxoglutarate dehydrogenase E1 component compare
NIAGMN_23300 -4.2 -0.8 hypothetical protein compare
NIAGMN_26200 -4.2 -0.8 hypothetical protein compare
NIAGMN_02525 -4.2 -1.3 hypothetical protein compare
NIAGMN_07530 proA -4.2 -10.9 glutamate-5-semialdehyde dehydrogenase compare
NIAGMN_12395 ilvD -4.1 -18.6 dihydroxy-acid dehydratase compare
NIAGMN_24210 rne -4.1 -1.7 ribonuclease E compare
NIAGMN_26465 ycjG -4.1 -1.3 L-Ala-D/L-Glu epimerase compare
NIAGMN_00450 uidC -4.1 -1.8 glucuronide uptake porin UidC compare
NIAGMN_22220 dcd -4.1 -2.8 dCTP deaminase compare
NIAGMN_21440 yehW -4.0 -1.3 glycine betaine ABC transporter permease YehW compare
NIAGMN_13040 escK -4.0 -0.7 type III secretion system sorting platform component compare
NIAGMN_20390 aroC -4.0 -4.3 chorismate synthase compare
NIAGMN_17750 ygdR -4.0 -1.0 lipoprotein YgdR compare
NIAGMN_23600 -4.0 -3.0 hypothetical protein compare
NIAGMN_22440 hisA -3.9 -1.4 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
NIAGMN_12380 ilvC -3.9 -14.6 ketol-acid reductoisomerase compare
NIAGMN_15325 aroE -3.8 -11.7 shikimate dehydrogenase compare
NIAGMN_16725 metC -3.8 -13.1 cystathionine beta-lyase compare
NIAGMN_26245 ydaV -3.8 -1.5 Uncharacterized protein YdaV compare
NIAGMN_05890 purE -3.8 -2.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
NIAGMN_22385 -3.8 -2.2 GDP-mannose 4,6-dehydratase compare
NIAGMN_19930 cysW -3.7 -4.1 sulfate/thiosulfate ABC transporter permease CysW compare
NIAGMN_25195 ftrA -3.7 -1.1 transcriptional regulator FtrA compare
NIAGMN_12080 metE -3.6 -17.4 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase compare
NIAGMN_02410 dsrB -3.6 -0.9 protein DsrB compare
NIAGMN_17090 tkt -3.6 -2.5 transketolase compare
NIAGMN_18150 cysH -3.6 -5.5 phosphoadenosine phosphosulfate reductase compare
NIAGMN_22750 -3.5 -0.6 DUF1391 domain-containing protein compare
NIAGMN_04600 -3.5 -1.1 lysis protein compare
NIAGMN_08955 thrB -3.5 -8.7 homoserine kinase compare
NIAGMN_04855 tolB -3.5 -5.9 Tol-Pal system protein TolB compare
NIAGMN_00735 ydhS -3.5 -1.7 FAD-NAD(P)-binding protein compare
NIAGMN_08565 -3.5 -12.1 2-isopropylmalate synthase compare
NIAGMN_26845 trpA -3.4 -0.9 tryptophan synthase subunit alpha compare
NIAGMN_07535 proB -3.4 -8.1 Glutamate 5-kinase compare
NIAGMN_28715 -3.4 -0.6 transcriptional regulator compare
NIAGMN_08640 araD -3.3 -7.2 L-ribulose-5-phosphate 4-epimerase compare
NIAGMN_23380 -3.2 -0.6 phage N-6-adenine-methyltransferase compare
NIAGMN_11025 metA -3.2 -7.7 homoserine O-succinyltransferase compare
NIAGMN_04010 ybjN -3.2 -2.0 Uncharacterized protein YbjN compare
NIAGMN_19280 glyA -3.2 -3.7 serine hydroxymethyltransferase compare
NIAGMN_24435 ydaS -3.2 -0.8 transcriptional regulator compare
NIAGMN_04965 sucC -3.2 -2.5 ADP-forming succinate--CoA ligase subunit beta compare
NIAGMN_18995 pheA -3.1 -7.4 bifunctional chorismate mutase/prephenate dehydratase compare
NIAGMN_13360 pyrE -3.1 -8.9 Orotate phosphoribosyltransferase compare
NIAGMN_09715 pyrB -3.1 -10.0 aspartate carbamoyltransferase compare
NIAGMN_24505 -3.1 -0.8 protein hokC compare
NIAGMN_06665 proC -3.1 -3.7 pyrroline-5-carboxylate reductase compare
NIAGMN_22355 wcaA -3.1 -0.8 glycosyl transferase compare
NIAGMN_02390 fliP -3.0 -0.8 flagellar type III secretion system pore protein FliP compare
NIAGMN_02180 -3.0 -2.2 phage tail protein compare
NIAGMN_04860 tolA -3.0 -1.3 cell envelope integrity protein TolA compare
NIAGMN_12085 metR -3.0 -10.5 HTH-type transcriptional regulator MetR compare
NIAGMN_04850 pal -3.0 -3.2 peptidoglycan-associated lipoprotein Pal compare
NIAGMN_18990 tyrA -3.0 -9.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
NIAGMN_24815 -3.0 -0.8 PerC family transcriptional regulator compare
NIAGMN_05855 fimA -3.0 -1.5 type 1 fimbrial major subunit FimA compare
NIAGMN_11060 purH -3.0 -12.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
NIAGMN_17715 lysA -3.0 -10.4 diaminopimelate decarboxylase compare
NIAGMN_03015 pyrD -3.0 -3.2 quinone-dependent dihydroorotate dehydrogenase compare
NIAGMN_08695 apaH -2.9 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NIAGMN_28695 tap -2.9 -0.5 RepA leader peptide Tap compare
NIAGMN_25310 lsrC -2.9 -0.9 autoinducer 2 ABC transporter permease LsrC compare
NIAGMN_28535 ehxC -2.9 -1.8 enterohemolysin-activating lysine-acyltransferase EhxC compare
NIAGMN_22065 gatZ -2.9 -1.9 tagatose-bisphosphate aldolase subunit GatZ compare
NIAGMN_04970 odhB -2.9 -1.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
NIAGMN_28935 -2.9 -0.9 Plasmid replication region DNA-binding N-term compare
NIAGMN_15850 argG -2.9 -10.7 argininosuccinate synthase compare
NIAGMN_17600 escJ -2.8 -1.3 EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein compare
NIAGMN_20005 -2.8 -1.7 LysR-substrate domain-containing protein compare
NIAGMN_23510 -2.8 -2.1 terminase compare
NIAGMN_19600 arsC -2.8 -0.7 arsenate reductase (glutaredoxin) compare
NIAGMN_09885 cysQ -2.8 -8.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
NIAGMN_11325 argH -2.8 -8.4 argininosuccinate lyase compare
NIAGMN_01435 dmlR -2.8 -1.2 DNA-binding transcriptional regulator DmlR compare
NIAGMN_08795 carA -2.7 -7.4 carbamoyl phosphate synthase small subunit compare
NIAGMN_19150 rseA -2.7 -3.8 anti-sigma-E factor RseA compare
NIAGMN_22360 wzy -2.7 -1.7 O157 family O-antigen polymerase compare
NIAGMN_23735 -2.7 -0.7 hypothetical protein compare
NIAGMN_19530 guaB -2.7 -5.3 IMP dehydrogenase compare
NIAGMN_08680 pdxA -2.7 -6.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
NIAGMN_00460 uidA -2.7 -1.4 beta-glucuronidase compare
NIAGMN_22435 hisF -2.6 -1.1 Imidazole glycerol phosphate synthase subunit HisF compare
NIAGMN_11330 -2.6 -8.8 acetylglutamate kinase compare
NIAGMN_20485 purF -2.6 -7.7 amidophosphoribosyltransferase compare
NIAGMN_17015 yggT -2.6 -2.6 osmotic shock tolerance protein YggT compare
NIAGMN_23780 pgaD -2.6 -0.7 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
NIAGMN_08790 carB -2.6 -11.5 carbamoyl-phosphate synthase large subunit compare
NIAGMN_11430 metB -2.6 -11.2 cystathionine gamma-synthase compare
NIAGMN_26790 yciK -2.6 -0.7 YciK family oxidoreductase compare
NIAGMN_11065 purD -2.6 -10.3 Phosphoribosylamine--glycine ligase compare
NIAGMN_02090 -2.6 -2.5 hypothetical protein compare
NIAGMN_01740 pyk -2.6 -1.3 pyruvate kinase compare
NIAGMN_18140 cysJ -2.6 -10.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
NIAGMN_06240 rsmS -2.6 -2.3 pleiotropic regulatory protein RsmS compare
NIAGMN_12400 ilvE -2.5 -11.6 branched-chain-amino-acid transaminase compare
NIAGMN_22180 terY -2.5 -2.1 Uncharacterized protein YegL compare
NIAGMN_04120 dgcI -2.5 -1.8 putative diguanylate cyclase DgcI compare
NIAGMN_00610 sodC -2.5 -1.1 superoxide dismutase [Cu-Zn] SodC compare
NIAGMN_11925 dsbA -2.5 -1.0 thiol:disulfide interchange protein DsbA compare
NIAGMN_05895 purK -2.4 -5.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
NIAGMN_09145 holD -2.4 -1.3 DNA polymerase III subunit psi compare
NIAGMN_12390 ilvA -2.4 -9.6 threonine ammonia-lyase, biosynthetic compare
NIAGMN_24885 hflD -2.4 -1.5 high frequency lysogenization protein HflD compare
NIAGMN_08175 mrcB -2.4 -11.2 bifunctional glycosyl transferase/transpeptidase compare
NIAGMN_23405 kilAC -2.4 -1.8 DNA-binding protein compare
NIAGMN_14950 cysG -2.4 -9.7 siroheme synthase CysG compare
NIAGMN_00890 -2.3 -0.9 hypothetical protein compare
NIAGMN_00815 sufA -2.3 -0.8 Fe-S cluster assembly scaffold SufA compare
NIAGMN_22730 -2.3 -0.7 DUF4224 domain-containing protein compare
NIAGMN_18220 cysC -2.3 -9.4 Adenylyl-sulfate kinase compare
NIAGMN_18215 cysN -2.3 -8.3 sulfate adenylyltransferase subunit CysN compare
NIAGMN_19700 purC -2.3 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
NIAGMN_01725 zwf -2.3 -2.1 glucose-6-phosphate dehydrogenase compare
NIAGMN_25805 -2.3 -0.9 Regulatory protein mokB compare
NIAGMN_11345 ppc -2.2 -12.1 phosphoenolpyruvate carboxylase compare
NIAGMN_00830 menI -2.2 -1.0 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
NIAGMN_26325 ttcA -2.2 -2.4 tRNA 2-thiocytidine(32) synthetase TtcA compare
NIAGMN_11210 tuf -2.2 -1.3 elongation factor Tu compare
NIAGMN_18145 cysI -2.2 -7.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
NIAGMN_19240 purL -2.2 -11.9 phosphoribosylformylglycinamidine synthase compare
NIAGMN_04960 sucD -2.2 -2.0 succinate--CoA ligase subunit alpha compare
NIAGMN_02920 yccT -2.2 -3.3 DUF2057 domain-containing protein compare
NIAGMN_21945 -2.2 -0.7 WGR domain-containing protein compare
NIAGMN_21585 -2.2 -1.4 Replication protein O compare
NIAGMN_08965 thrL -2.1 -2.4 thr operon leader peptide compare
NIAGMN_00755 ydhW -2.1 -2.8 YdhW family putative oxidoreductase system protein compare
NIAGMN_01570 yebO -2.1 -1.0 Uncharacterized protein YebO compare
NIAGMN_03530 -2.1 -0.9 IS150 conserved protein InsB compare
NIAGMN_12195 cyaY -2.1 -1.1 iron donor protein CyaY compare
NIAGMN_03765 tnp-IS3 -2.1 -1.0 IS3 family transposase compare
NIAGMN_19535 guaA -2.1 -1.9 glutamine-hydrolyzing GMP synthase compare
NIAGMN_27645 galU -2.1 -2.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
NIAGMN_00345 ynfM -2.1 -2.0 Inner membrane transport protein YnfM compare
NIAGMN_23615 -2.1 -1.1 bacteriocin compare
NIAGMN_16335 higA -2.1 -2.8 type II toxin-antitoxin system antitoxin HigA compare
NIAGMN_28290 -2.1 -1.0 antiterminator compare
NIAGMN_17830 argA -2.0 -7.4 amino-acid N-acetyltransferase compare
NIAGMN_02055 -2.0 -1.9 transcriptional regulator compare
NIAGMN_21990 rcnA -2.0 -0.9 nickel/cobalt efflux protein RcnA compare
NIAGMN_08635 araA -2.0 -6.8 L-arabinose isomerase compare
NIAGMN_04905 -2.0 -0.6 hypothetical protein compare
NIAGMN_01040 yniA -2.0 -0.9 putative ketoamine kinase YniA compare
NIAGMN_24740 espK -2.0 -1.5 type III secretion system effector EspK compare
NIAGMN_11855 glnA -2.0 -3.2 glutamate--ammonia ligase compare
NIAGMN_19580 purM -2.0 -6.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
NIAGMN_20610 nuoA -2.0 -2.5 NADH-quinone oxidoreductase subunit NuoA compare
NIAGMN_19970 cysK -1.9 -6.3 cysteine synthase A compare
NIAGMN_00385 pntA -1.9 -1.5 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
NIAGMN_00780 lpp -1.9 -3.0 murein lipoprotein Lpp compare
NIAGMN_17710 lysR -1.9 -7.6 DNA-binding transcriptional regulator LysR compare
NIAGMN_18975 yfiR -1.9 -2.8 Protein YfiR compare
NIAGMN_01595 prc -1.9 -6.0 carboxy terminal-processing peptidase compare
NIAGMN_09490 -1.9 -0.7 Transposase compare
NIAGMN_02445 yedA -1.9 -1.7 drug/metabolite exporter YedA compare
NIAGMN_07895 gmhB -1.9 -1.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
NIAGMN_05700 hokE -1.9 -2.3 type I toxin-antitoxin system toxin HokE compare
NIAGMN_23155 torD -1.9 -1.6 molecular chaperone TorD compare
NIAGMN_01615 yebT -1.9 -1.8 lipid-binding membrane homeostasis protein YebT compare
NIAGMN_09685 argF -1.9 -6.7 ornithine carbamoyltransferase compare
NIAGMN_25315 lsrA -1.9 -0.9 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
NIAGMN_05000 sdhC -1.8 -1.9 succinate dehydrogenase cytochrome b556 subunit compare
NIAGMN_05635 fepB -1.8 -4.7 ferrienterobactin ABC transporter periplasmic binding protein compare
NIAGMN_00380 pntB -1.8 -2.3 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta compare
NIAGMN_08960 thrA -1.8 -9.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
NIAGMN_20605 -1.8 -0.6 hypothetical protein compare
NIAGMN_06385 clpX -1.8 -3.4 ATP-dependent protease ATP-binding subunit ClpX compare
NIAGMN_00590 slyA -1.8 -0.6 transcriptional regulator SlyA compare
NIAGMN_07350 -1.8 -0.9 hypothetical protein compare
NIAGMN_21305 mglC -1.8 -1.5 galactose/methyl galactoside ABC transporter permease MglC compare
NIAGMN_26835 trpCF -1.8 -2.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
NIAGMN_23445 stxB2a -1.7 -0.9 Shiga toxin Stx2a subunit B compare
NIAGMN_04080 deoR -1.7 -1.8 DNA-binding transcriptional repressor DeoR compare
NIAGMN_07415 -1.7 -0.7 AAA family ATPase compare
NIAGMN_17510 araC -1.7 -1.3 AraC family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC102 in carbon source experiments

For carbon source L-Arabinose across organisms