Experiment set2S157 for Escherichia coli ECRC101

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L-Arabinose

Group: carbon source
Media: M9_plus_L-Arabinose + L-Arabinose (20 mM)
Culturing: Ecoli_ECRC101_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/16/24

Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Arabinose in Escherichia coli ECRC101

For carbon source L-Arabinose across organisms

SEED Subsystems

Subsystem #Specific
L-Arabinose utilization 5
Cysteine Biosynthesis 2
Methionine Biosynthesis 2
Acetoin, butanediol metabolism 1
Branched-Chain Amino Acid Biosynthesis 1
Fermentations: Mixed acid 1
L-ascorbate utilization (and related gene clusters) 1
Pyruvate metabolism I: anaplerotic reactions, PEP 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-arabinose degradation I 4 4 3
CO2 fixation into oxaloacetate (anaplerotic) 2 2 1
D-arabinose degradation I 2 2 1
sulfate activation for sulfonation 2 2 1
pyruvate fermentation to (R)-acetoin II 2 1 1
ribitol degradation I 2 1 1
assimilatory sulfate reduction III 3 3 1
pyruvate fermentation to (S)-acetoin 3 3 1
S-adenosyl-L-methionine salvage II 3 2 1
pyruvate fermentation to (R)-acetoin I 3 2 1
sulfite oxidation III 3 1 1
assimilatory sulfate reduction II 3 1 1
D-arabinose degradation V 3 1 1
S-adenosyl-L-methionine salvage I 4 4 1
L-valine biosynthesis 4 4 1
assimilatory sulfate reduction I 4 4 1
assimilatory sulfate reduction IV 4 3 1
L-lyxose degradation 4 3 1
L-methionine biosynthesis III 4 2 1
L-ascorbate degradation I (bacterial, anaerobic) 5 5 1
L-methionine biosynthesis I 5 5 1
pyruvate fermentation to isobutanol (engineered) 5 4 1
seleno-amino acid biosynthesis (plants) 5 3 1
selenate reduction 5 2 1
superpathway of (R,R)-butanediol biosynthesis 5 2 1
dissimilatory sulfate reduction I (to hydrogen sufide)) 5 1 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 10 2
L-methionine biosynthesis II 6 5 1
L-isoleucine biosynthesis IV 6 4 1
superpathway of 2,3-butanediol biosynthesis 6 3 1
superpathway of sulfur metabolism (Desulfocapsa sulfoexigens) 6 1 1
superpathway of thiosulfate metabolism (Desulfovibrio sulfodismutans) 6 1 1
L-isoleucine biosynthesis I (from threonine) 7 7 1
L-ascorbate degradation II (bacterial, aerobic) 7 5 1
L-isoleucine biosynthesis III 7 5 1
C4 photosynthetic carbon assimilation cycle, NADP-ME type 7 4 1
superpathway of L-homoserine and L-methionine biosynthesis 8 8 1
partial TCA cycle (obligate autotrophs) 8 7 1
nitrogen remobilization from senescing leaves 8 5 1
L-isoleucine biosynthesis II 8 4 1
superpathway of branched chain amino acid biosynthesis 17 17 2
superpathway of L-methionine biosynthesis (transsulfuration) 9 9 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 9 1
superpathway of sulfate assimilation and cysteine biosynthesis 9 9 1
superpathway of seleno-compound metabolism 19 6 2
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) 10 6 1
superpathway of pentose and pentitol degradation 42 15 4
C4 photosynthetic carbon assimilation cycle, NAD-ME type 11 8 1
superpathway of sulfide oxidation (phototrophic sulfur bacteria) 12 2 1
superpathway of L-isoleucine biosynthesis I 13 13 1
formaldehyde assimilation I (serine pathway) 13 8 1
C4 photosynthetic carbon assimilation cycle, PEPCK type 14 9 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
mixed acid fermentation 16 16 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 18 1
superpathway of L-threonine metabolism 18 15 1
gluconeogenesis II (Methanobacterium thermoautotrophicum) 18 9 1
aspartate superpathway 25 24 1
ethene biosynthesis V (engineered) 25 18 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 22 1