Experiment set2S154 for Escherichia coli ECOR38

Compare to:

Bas39

200 most important genes:

  gene name fitness t score description  
HEPCGN_01010 ubiF -4.9 -2.6 3-demethoxyubiquinol 3-hydroxylase compare
HEPCGN_03185 wzzB -4.1 -6.8 LPS O-antigen chain length determinant protein WzzB compare
HEPCGN_08815 surA -3.8 -2.6 peptidylprolyl isomerase SurA compare
HEPCGN_12935 ubiE -3.7 -2.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HEPCGN_08475 aceF -3.6 -3.0 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_13290 wecA -3.5 -2.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_14540 rfaF -3.5 -2.4 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_12895 rfaH -3.3 -4.8 transcription/translation regulatory transformer protein RfaH compare
HEPCGN_14530 -3.1 -3.6 O-antigen ligase domain-containing protein compare
HEPCGN_20250 ratA -3.0 -2.9 type II toxin-antitoxin system toxin RatA compare
HEPCGN_08460 acnB -3.0 -9.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
HEPCGN_14525 -2.8 -3.5 beta1,3-glucosyltransferase compare
HEPCGN_24740 fadR -2.8 -5.9 fatty acid metabolism transcriptional regulator FadR compare
HEPCGN_19305 recB -2.7 -6.9 exodeoxyribonuclease V subunit beta compare
HEPCGN_07100 -2.7 -1.6 Putative virulence protein compare
HEPCGN_02315 -2.6 -0.8 MarR family transcriptional regulator compare
HEPCGN_22930 trxB -2.4 -3.7 thioredoxin-disulfide reductase compare
HEPCGN_21370 ptsI -2.4 -4.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_08480 aceE -2.4 -8.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_16680 zapG -2.3 -1.4 Z-ring associated protein ZapG compare
HEPCGN_16670 degS -2.3 -1.5 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_15945 dam -2.3 -4.2 adenine-specific DNA-methyltransferase compare
HEPCGN_25600 cysB -2.2 -2.7 HTH-type transcriptional regulator CysB compare
HEPCGN_21995 pta -2.2 -4.9 phosphate acetyltransferase compare
HEPCGN_00885 lipB -2.2 -3.1 lipoyl(octanoyl) transferase LipB compare
HEPCGN_13320 rep -2.1 -5.3 DNA helicase Rep compare
HEPCGN_13595 pstC -2.0 -4.2 phosphate ABC transporter permease PstC compare
HEPCGN_20125 -2.0 -1.4 hypothetical protein compare
HEPCGN_20780 hscA -2.0 -3.5 Fe-S protein assembly chaperone HscA compare
HEPCGN_20765 iscU -2.0 -1.9 Iron-sulfur cluster assembly scaffold protein IscU compare
HEPCGN_13250 wzxE -2.0 -6.7 lipid III flippase WzxE compare
HEPCGN_03710 -1.9 -2.8 Uncharacterized protein Rem compare
HEPCGN_13500 mnmG -1.8 -8.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_13605 pstB -1.8 -2.1 phosphate ABC transporter ATP-binding protein PstB compare
HEPCGN_04595 flhe -1.8 -3.0 flagellar protein FlhE compare
HEPCGN_12340 metL -1.8 -7.1 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_03335 -1.8 -1.3 restriction endonuclease compare
HEPCGN_23880 yceD -1.8 -3.3 23S rRNA accumulation protein YceD compare
HEPCGN_20525 rseA -1.7 -3.8 anti-sigma-E factor RseA compare
HEPCGN_01305 sucA -1.7 -5.6 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_19255 rppH -1.7 -2.0 RNA pyrophosphohydrolase compare
HEPCGN_04720 lpxM -1.6 -3.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HEPCGN_19295 recC -1.6 -5.6 exodeoxyribonuclease V subunit gamma compare
HEPCGN_00215 -1.6 -2.1 DNA-binding protein compare
HEPCGN_16500 fis -1.6 -2.3 DNA-binding transcriptional regulator Fis compare
HEPCGN_25670 yciZ -1.6 -2.5 UPF0509 protein YciZ compare
HEPCGN_17495 Ile2_trna -1.6 -1.5 tRNA-Ile2(cat) compare
HEPCGN_19505 mazE -1.5 -2.2 type II toxin-antitoxin system antitoxin MazE compare
HEPCGN_16770 arcB -1.5 -3.7 aerobic respiration two-component sensor histidine kinase ArcB compare
HEPCGN_22940 ftsK -1.5 -4.6 DNA translocase FtsK compare
HEPCGN_26545 ydeO -1.5 -2.1 acid stress response transcriptional regulator YdeO compare
HEPCGN_03670 -1.5 -2.3 Putative bacterial toxin ydaT compare
HEPCGN_01460 tolA -1.5 -5.1 cell envelope integrity protein TolA compare
HEPCGN_22000 ackA -1.5 -2.6 acetate kinase compare
HEPCGN_19900 recA -1.4 -3.1 recombinase RecA compare
HEPCGN_08835 apaH -1.4 -7.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_13680 -1.4 -2.3 tRNA modification GTPase MnmE compare
HEPCGN_16325 yhdN -1.4 -2.3 Uncharacterized protein YhdN compare
HEPCGN_21875 truA -1.4 -3.5 aspartate-semialdehyde dehydrogenase compare
HEPCGN_07985 gmhB -1.4 -4.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
HEPCGN_01470 pal -1.4 -3.5 peptidoglycan-associated lipoprotein Pal compare
HEPCGN_14570 envC -1.4 -4.7 murein hydrolase activator EnvC compare
HEPCGN_05670 lpp -1.4 -3.6 murein lipoprotein Lpp compare
HEPCGN_17025 yrbN -1.3 -2.2 Uncharacterized protein YrbN compare
HEPCGN_01450 tolQ -1.3 -4.5 Tol-Pal system protein TolQ compare
HEPCGN_14520 rfaJ -1.3 -3.5 UDP-galactose--(galactosyl) LPS alpha1,2-galactosyltransferase compare
HEPCGN_13100 corA -1.3 -4.8 magnesium/cobalt transporter CorA compare
HEPCGN_01455 tolR -1.3 -2.0 colicin uptake protein TolR compare
HEPCGN_15745 glpD -1.3 -5.2 glycerol-3-phosphate dehydrogenase compare
HEPCGN_20870 -1.3 -2.1 zinc-ribbons compare
HEPCGN_01465 tolB -1.3 -4.9 Tol-Pal system protein TolB compare
HEPCGN_20860 bamB -1.3 -3.6 outer membrane protein assembly factor BamB compare
HEPCGN_01100 uof -1.3 -1.0 fur leader peptide compare
HEPCGN_10550 asd -1.3 -1.4 archaetidylserine decarboxylase compare
HEPCGN_15355 pitA -1.2 -6.2 inorganic phosphate transporter PitA compare
HEPCGN_21275 amiA -1.2 -5.9 N-acetylmuramoyl-L-alanine amidase AmiA compare
HEPCGN_21870 usg -1.2 -3.5 aspartate-semialdehyde dehydrogenase compare
HEPCGN_14495 rfaJ -1.2 -4.4 lipopolysaccharide 1,2-glucosyltransferase compare
HEPCGN_24800 ldcA -1.2 -3.0 muramoyltetrapeptide carboxypeptidase compare
HEPCGN_26105 azoR -1.2 -3.8 FMN-dependent NADH-azoreductase compare
HEPCGN_16920 greA -1.1 -1.2 transcription elongation factor GreA compare
HEPCGN_25230 -1.1 -2.5 DUF1627 domain-containing protein compare
HEPCGN_06785 apt -1.1 -2.5 adenine phosphoribosyltransferase compare
HEPCGN_03435 -1.1 -1.2 Uncharacterized deacetylase YaiS compare
HEPCGN_08295 dksA -1.1 -4.2 RNA polymerase-binding protein DksA compare
HEPCGN_18630 tkt -1.1 -2.4 transketolase compare
HEPCGN_25595 -1.1 -2.7 type I DNA topoisomerase compare
HEPCGN_15950 rpe -1.1 -1.9 ribulose-phosphate 3-epimerase compare
HEPCGN_03635 -1.0 -1.2 DUF1482 domain-containing protein compare
HEPCGN_04305 -1.0 -2.3 holin compare
HEPCGN_04750 kdgA -1.0 -2.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HEPCGN_11080 cbtA -1.0 -1.2 type IV toxin-antitoxin system toxin CbtA compare
HEPCGN_12115 Thr_trna -1.0 -1.6 tRNA-Thr(ggt) compare
HEPCGN_04695 ruvB -1.0 -1.2 Holliday junction branch migration DNA helicase RuvB compare
HEPCGN_13550 atpC -1.0 -1.8 F0F1 ATP synthase subunit epsilon compare
HEPCGN_20545 lepA -1.0 -4.8 translation elongation factor 4 compare
HEPCGN_20770 iscA -1.0 -1.6 iron-sulfur cluster assembly protein IscA compare
HEPCGN_13590 pstS -1.0 -5.4 phosphate ABC transporter substrate-binding protein PstS compare
HEPCGN_01120 seqA -1.0 -1.4 replication initiation negative regulator SeqA compare
HEPCGN_04320 -1.0 -4.1 terminase compare
HEPCGN_15535 ftsE -0.9 -3.5 cell division ATP-binding protein FtsE compare
HEPCGN_04315 -0.9 -1.4 capsid assembly protein compare
HEPCGN_04865 prc -0.9 -5.7 carboxy terminal-processing peptidase compare
HEPCGN_24120 -0.9 -3.1 DUF4222 domain-containing protein compare
HEPCGN_20505 srmB -0.9 -5.2 ATP-dependent RNA helicase SrmB compare
HEPCGN_10095 treC -0.9 -3.0 alpha,alpha-phosphotrehalase compare
HEPCGN_15695 yhgO -0.9 -1.0 Protein YhgO compare
HEPCGN_09240 -0.9 -1.6 Glycine radical enzyme, YjjI family compare
HEPCGN_00045 -0.9 -1.3 Arginyl-tRNA synthetase compare
HEPCGN_08665 cra -0.9 -4.0 catabolite repressor/activator compare
HEPCGN_00460 yjdB -0.9 -1.0 phage tail protein compare
HEPCGN_07085 nrdR -0.9 -2.9 transcriptional regulator NrdR compare
HEPCGN_20585 shoB -0.9 -0.9 Small toxic protein ShoB compare
HEPCGN_12475 pfkA -0.9 -3.0 6-phosphofructokinase compare
HEPCGN_03340 -0.9 -0.9 DUF945 domain-containing protein compare
HEPCGN_01560 galT -0.9 -3.9 galactose-1-phosphate uridylyltransferase compare
HEPCGN_08205 degP -0.8 -4.7 serine endoprotease DegP compare
HEPCGN_24700 hlyE -0.8 -2.0 hemolysin HlyE compare
HEPCGN_23415 gnsA -0.8 -1.4 Protein GnsA compare
HEPCGN_11980 hupA -0.8 -2.5 DNA-binding protein HU-alpha compare
HEPCGN_26770 -0.8 -2.7 Bacteriophage holin family HP1 compare
HEPCGN_25795 pspB -0.8 -0.8 envelope stress response membrane protein PspB compare
HEPCGN_26335 pptA -0.8 -0.9 tautomerase PptA compare
HEPCGN_26610 lsrF -0.8 -2.3 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase compare
HEPCGN_18880 lysS -0.8 -3.2 lysine--tRNA ligase compare
HEPCGN_10840 tetR(B -0.8 -2.0 tetracycline resistance transcriptional repressor TetR(B) compare
HEPCGN_25680 rnb -0.8 -3.1 exoribonuclease II compare
HEPCGN_22100 nuoM -0.8 -3.5 NADH-quinone oxidoreductase subunit M compare
HEPCGN_02205 yohF -0.8 -2.2 SDR family oxidoreductase compare
HEPCGN_01690 moaE -0.8 -2.2 molybdopterin synthase catalytic subunit MoaE compare
HEPCGN_16505 dusB -0.8 -4.1 tRNA dihydrouridine synthase DusB compare
HEPCGN_15930 aroK -0.8 -0.8 shikimate kinase AroK compare
HEPCGN_22085 nuoJ -0.8 -2.0 NADH-quinone oxidoreductase subunit J compare
HEPCGN_25720 sapF -0.8 -1.0 peptide ABC transporter ATP-binding protein SapF compare
HEPCGN_10490 miaA -0.8 -2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HEPCGN_17695 cpdA -0.8 -3.7 3',5'-cyclic-AMP phosphodiesterase compare
HEPCGN_08825 rsmA -0.8 -2.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
HEPCGN_25485 -0.8 -1.1 Ybl63 compare
HEPCGN_04405 -0.8 -0.7 DUF4754 domain-containing protein compare
HEPCGN_25335 -0.7 -1.9 Lysis protein compare
HEPCGN_06325 ynfS -0.7 -1.5 Protein YnfS compare
HEPCGN_10565 epmA -0.7 -1.9 elongation factor P--(R)-beta-lysine ligase compare
HEPCGN_12720 typA -0.7 -5.2 ribosome-dependent GTPase TypA compare
HEPCGN_05825 nemR -0.7 -1.7 DNA-binding transcriptional regulator NemR compare
HEPCGN_16115 slyD -0.7 -2.9 peptidylprolyl isomerase compare
HEPCGN_06895 decR -0.7 -0.9 DNA-binding transcriptional regulator DecR compare
HEPCGN_05440 pheM -0.7 -0.7 pheST operon leader peptide PheM compare
HEPCGN_09795 -0.7 -1.3 KpLE2 phage-like element compare
HEPCGN_18580 gshB -0.7 -3.6 glutathione synthase compare
HEPCGN_01875 ldtB -0.7 -3.8 L,D-transpeptidase compare
HEPCGN_25365 nu1 -0.7 -2.0 terminase compare
HEPCGN_17760 mqsA -0.7 -1.6 type II toxin-antitoxin system antitoxin MqsA compare
HEPCGN_17735 qseC -0.7 -3.7 two-component system sensor histidine kinase QseC compare
HEPCGN_14380 rpoZ -0.7 -1.8 DNA-directed RNA polymerase subunit omega compare
HEPCGN_06350 -0.7 -0.9 Uncharacterized protein YdfR compare
HEPCGN_19955 gshA -0.7 -4.0 glutamate--cysteine ligase compare
HEPCGN_00170 -0.7 -3.8 peptidyl-arginine deiminase compare
HEPCGN_16835 kdsC -0.7 -1.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HEPCGN_05475 btuD -0.7 -0.8 vitamin B12 ABC transporter ATP-binding protein BtuD compare
HEPCGN_22885 cspD -0.7 -1.1 cold shock-like protein CspD compare
HEPCGN_00100 ybcO -0.7 -2.1 Putative nuclease YbcO compare
HEPCGN_04015 fliR -0.7 -0.9 flagellar type III secretion system protein FliR compare
HEPCGN_26870 -0.7 -1.6 PTS cellobiose transporter subunit IIC compare
HEPCGN_17030 deaD -0.7 -2.9 ATP-dependent RNA helicase DeaD compare
HEPCGN_24425 -0.7 -1.9 phage tail assembly protein compare
HEPCGN_24250 -0.7 -2.6 Integrase compare
HEPCGN_03035 wcaE -0.7 -1.3 colanic acid biosynthesis glycosyltransferase WcaE compare
HEPCGN_19720 mopI -0.7 -2.0 transporter compare
HEPCGN_08980 espX1 -0.7 -1.5 type III secretion system effector EspX1 compare
HEPCGN_10485 hfq -0.7 -2.0 RNA chaperone Hfq compare
HEPCGN_26265 -0.7 -2.2 DUF2526 domain-containing protein compare
HEPCGN_00570 nrfB -0.6 -0.7 phage adsorption protein NrfB compare
HEPCGN_04480 yecJ -0.6 -1.2 Uncharacterized protein YecJ compare
HEPCGN_18640 cmtB -0.6 -1.7 PTS mannitol transporter subunit IIA compare
HEPCGN_17235 tdcB -0.6 -2.7 bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB compare
HEPCGN_15800 -0.6 -2.8 NfuA family Fe-S biogenesis protein compare
HEPCGN_03890 -0.6 -1.6 hypothetical protein compare
HEPCGN_19310 recD -0.6 -3.1 exodeoxyribonuclease V subunit alpha compare
HEPCGN_08545 zapD -0.6 -3.3 cell division protein ZapD compare
HEPCGN_17175 agaR -0.6 -2.3 aga operon transcriptional regulator AgaR compare
HEPCGN_21985 yfcD -0.6 -2.3 NUDIX hydrolase YfcD compare
HEPCGN_13165 cyaA -0.6 -2.9 class I adenylate cyclase compare
HEPCGN_21970 yfcG -0.6 -2.1 GSH-dependent disulfide bond oxidoreductase compare
HEPCGN_15540 ftsX -0.6 -3.4 permease-like cell division protein FtsX compare
HEPCGN_09895 -0.6 -0.7 Transposase compare
HEPCGN_08755 -0.6 -1.0 hypothetical protein compare
HEPCGN_01580 modA -0.6 -1.9 molybdate ABC transporter substrate-binding protein compare
HEPCGN_22090 nuoK -0.6 -1.0 NADH-quinone oxidoreductase subunit NuoK compare
HEPCGN_04665 -0.6 -1.9 putative transcriptional regulatory protein YebC compare
HEPCGN_03765 -0.6 -1.2 lysis protein compare
HEPCGN_13275 wecC -0.6 -2.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
HEPCGN_03755 -0.6 -0.8 DUF1327 domain-containing protein compare
HEPCGN_12385 hslU -0.6 -2.8 HslU--HslV peptidase ATPase subunit compare
HEPCGN_04505 otsB -0.6 -1.6 trehalose-phosphatase compare
HEPCGN_08305 pcnB -0.6 -3.1 polynucleotide adenylyltransferase PcnB compare
HEPCGN_00190 -0.6 -0.5 DUF2726 domain-containing protein compare
HEPCGN_04740 zwf -0.6 -2.8 glucose-6-phosphate dehydrogenase compare
HEPCGN_04575 cheY -0.6 -1.6 chemotaxis regulatory protein CheY compare
HEPCGN_02985 -0.6 -0.5 transcriptional regulator compare
HEPCGN_25930 ogt -0.6 -0.9 methylated-DNA--[protein]-cysteine S-methyltransferase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR38 in phage experiments

For phage Phage across organisms