Experiment set2S142 for Rhodanobacter sp000427505 FW510-R12

Compare to:

Biofilm; Day2; SGW; pH7

200 most detrimental genes:

  gene name fitness t score description  
LRK53_RS06035 +1.3 2.3 helix-turn-helix domain-containing protein compare
LRK53_RS03635 +1.3 2.4 50S ribosomal protein L33 compare
LRK53_RS16510 +1.1 1.6 DUF4124 domain-containing protein compare
LRK53_RS10270 +1.0 1.7 alpha/beta fold hydrolase compare
LRK53_RS17005 +0.9 1.9 hypothetical protein compare
LRK53_RS09420 +0.9 1.3 YidB family protein compare
LRK53_RS13100 +0.9 1.5 AzlC family ABC transporter permease compare
LRK53_RS13020 +0.9 1.4 sulfur transferase domain-containing protein compare
LRK53_RS04625 +0.9 1.2 peptide chain release factor 3 compare
LRK53_RS16345 +0.9 1.4 hypothetical protein compare
LRK53_RS08100 +0.8 2.0 MBL fold metallo-hydrolase compare
LRK53_RS07695 +0.8 1.5 enoyl-CoA hydratase-related protein compare
LRK53_RS16860 +0.8 0.9 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS01120 +0.8 2.6 VanZ family protein compare
LRK53_RS15675 +0.8 1.4 BolA/IbaG family iron-sulfur metabolism protein compare
LRK53_RS06570 +0.8 1.4 DUF615 domain-containing protein compare
LRK53_RS14990 +0.8 1.5 chemotaxis response regulator CheY compare
LRK53_RS16675 +0.8 1.2 DUF58 domain-containing protein compare
LRK53_RS07600 +0.8 1.7 ABC transporter ATP-binding protein compare
LRK53_RS04110 +0.8 2.2 LytTR family transcriptional regulator DNA-binding domain-containing protein compare
LRK53_RS09090 +0.8 6.0 polyribonucleotide nucleotidyltransferase compare
LRK53_RS05740 +0.7 1.5 chemotaxis protein CheW compare
LRK53_RS10160 +0.7 1.2 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS03865 +0.7 3.5 DsbA family oxidoreductase compare
LRK53_RS04100 +0.7 1.6 DUF3247 family protein compare
LRK53_RS00690 +0.7 1.3 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS07200 +0.7 2.8 hypothetical protein compare
LRK53_RS00645 +0.7 1.5 GTP cyclohydrolase I FolE compare
LRK53_RS06500 +0.7 1.0 disulfide bond formation protein B compare
LRK53_RS14035 +0.7 3.6 formate-dependent phosphoribosylglycinamide formyltransferase compare
LRK53_RS19125 +0.7 2.3 GPI inositol-deacylase compare
LRK53_RS08695 +0.7 5.1 amidophosphoribosyltransferase compare
LRK53_RS14890 +0.7 1.9 hypothetical protein compare
LRK53_RS13060 +0.7 1.5 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS02945 +0.7 4.7 phosphoribosylamine--glycine ligase compare
LRK53_RS08795 +0.7 2.0 MBL fold metallo-hydrolase compare
LRK53_RS10980 +0.7 1.7 hypothetical protein compare
LRK53_RS02255 +0.7 1.4 3-oxoacyl-ACP reductase FabG compare
LRK53_RS18025 +0.6 1.2 hypothetical protein compare
LRK53_RS14980 +0.6 2.0 chemotaxis protein CheA compare
LRK53_RS07420 +0.6 1.8 DNA repair protein RadA compare
LRK53_RS01140 +0.6 2.8 complex I NDUFA9 subunit family protein compare
LRK53_RS15955 +0.6 1.3 PhzF family phenazine biosynthesis protein compare
LRK53_RS02150 +0.6 1.7 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS06025 +0.6 1.5 nucleotidyltransferase domain-containing protein compare
LRK53_RS06930 +0.6 1.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS12245 +0.6 1.2 ribosome assembly RNA-binding protein YhbY compare
LRK53_RS19140 +0.6 1.3 hypothetical protein compare
LRK53_RS08575 +0.6 1.8 RNA-binding S4 domain-containing protein compare
LRK53_RS10275 +0.6 2.0 2-oxopent-4-enoate hydratase compare
LRK53_RS17150 +0.6 1.5 ferredoxin family protein compare
LRK53_RS02085 +0.6 2.9 hypothetical protein compare
LRK53_RS12265 +0.6 1.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK53_RS00740 +0.6 1.6 MarR family transcriptional regulator compare
LRK53_RS09590 +0.6 0.8 hypothetical protein compare
LRK53_RS18695 +0.6 3.0 hypothetical protein compare
LRK53_RS16900 +0.6 1.4 ribose-5-phosphate isomerase RpiA compare
LRK53_RS00485 +0.6 2.4 glycosyltransferase compare
LRK53_RS05295 +0.5 5.0 phosphoribosylformylglycinamidine synthase compare
LRK53_RS06925 +0.5 1.4 MtnX-like HAD-IB family phosphatase compare
LRK53_RS14100 +0.5 2.1 response regulator transcription factor compare
LRK53_RS11335 +0.5 1.4 acyl-CoA-binding protein compare
LRK53_RS12970 +0.5 0.9 RNA 2',3'-cyclic phosphodiesterase compare
LRK53_RS14435 +0.5 1.8 hypothetical protein compare
LRK53_RS05565 +0.5 0.7 H-NS histone family protein compare
LRK53_RS18600 +0.5 2.5 MFS transporter compare
LRK53_RS04265 +0.5 2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS11265 +0.5 0.9 hypothetical protein compare
LRK53_RS03165 +0.5 0.9 homoserine dehydrogenase compare
LRK53_RS12420 +0.5 2.1 SgcJ/EcaC family oxidoreductase compare
LRK53_RS07395 +0.5 1.0 iron-sulfur cluster assembly accessory protein compare
LRK53_RS14060 +0.5 2.0 DUF423 domain-containing protein compare
LRK53_RS18830 +0.5 1.0 TraV family lipoprotein compare
LRK53_RS01160 +0.5 2.7 endonuclease/exonuclease/phosphatase family protein compare
LRK53_RS00345 +0.5 1.8 sorbitol dehydrogenase family protein compare
LRK53_RS00405 +0.5 1.1 trimeric intracellular cation channel family protein compare
LRK53_RS02415 +0.5 2.8 carbohydrate ABC transporter permease compare
LRK53_RS13795 +0.5 1.5 cytochrome c compare
LRK53_RS03810 +0.5 1.6 thiazole synthase compare
LRK53_RS02095 +0.5 1.0 helix-turn-helix domain-containing protein compare
LRK53_RS18300 +0.5 1.8 hypothetical protein compare
LRK53_RS06840 +0.5 1.8 tRNA guanosine(34) transglycosylase Tgt compare
LRK53_RS15995 +0.5 1.6 DUF58 domain-containing protein compare
LRK53_RS17185 +0.5 1.3 copper-containing nitrite reductase compare
LRK53_RS13165 +0.5 2.0 alkyl hydroperoxide reductase compare
LRK53_RS15460 +0.5 1.3 FHA domain-containing protein compare
LRK53_RS03245 +0.4 2.0 glycerophosphodiester phosphodiesterase compare
LRK53_RS14390 +0.4 2.7 universal stress protein compare
LRK53_RS13380 +0.4 0.8 hypothetical protein compare
LRK53_RS01995 +0.4 2.9 ATP-binding protein compare
LRK53_RS15630 +0.4 1.6 RNA methyltransferase compare
LRK53_RS05965 +0.4 2.7 glycosyltransferase family 2 protein compare
LRK53_RS04650 +0.4 3.0 M20/M25/M40 family metallo-hydrolase compare
LRK53_RS11815 +0.4 2.0 hypothetical protein compare
LRK53_RS16635 +0.4 0.5 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS11620 +0.4 1.1 hypothetical protein compare
LRK53_RS02315 +0.4 2.4 tyrosine recombinase XerC compare
LRK53_RS15655 +0.4 2.0 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS03225 +0.4 1.5 hypothetical protein compare
LRK53_RS01630 +0.4 0.9 protein-disulfide reductase DsbD compare
LRK53_RS07145 +0.4 1.4 thioredoxin compare
LRK53_RS10530 +0.4 1.0 acyl-CoA dehydrogenase family protein compare
LRK53_RS15240 +0.4 1.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
LRK53_RS18970 +0.4 2.1 site-specific DNA-methyltransferase compare
LRK53_RS03770 +0.4 1.4 hypothetical protein compare
LRK53_RS00385 +0.4 1.9 aldehyde dehydrogenase family protein compare
LRK53_RS00995 +0.4 1.9 hypothetical protein compare
LRK53_RS13565 +0.4 0.6 isocitrate dehydrogenase compare
LRK53_RS02060 +0.4 3.3 DUF2779 domain-containing protein compare
LRK53_RS17450 +0.4 1.7 FAD/NAD(P)-binding protein compare
LRK53_RS04640 +0.4 1.0 helix-turn-helix domain-containing protein compare
LRK53_RS09240 +0.4 0.7 DUF4386 domain-containing protein compare
LRK53_RS13705 +0.4 1.1 response regulator compare
LRK53_RS17110 +0.4 3.5 transketolase compare
LRK53_RS18185 +0.4 1.6 PRTRC system protein E compare
LRK53_RS09340 +0.4 1.3 hypothetical protein compare
LRK53_RS16665 +0.4 1.7 VWA domain-containing protein compare
LRK53_RS16375 +0.4 2.7 3-isopropylmalate dehydratase large subunit compare
LRK53_RS17885 +0.4 0.6 orotate phosphoribosyltransferase compare
LRK53_RS16630 +0.4 1.2 hypothetical protein compare
LRK53_RS00810 +0.4 2.7 sugar MFS transporter compare
LRK53_RS14130 +0.4 1.0 hypothetical protein compare
LRK53_RS13635 +0.4 1.2 recombination regulator RecX compare
LRK53_RS08840 +0.4 2.3 DUF3488 and transglutaminase-like domain-containing protein compare
LRK53_RS09270 +0.4 1.3 hypothetical protein compare
LRK53_RS11960 +0.4 1.0 response regulator compare
LRK53_RS01220 +0.4 2.4 hypothetical protein compare
LRK53_RS13255 +0.4 1.6 hypothetical protein compare
LRK53_RS01105 +0.4 2.1 hypothetical protein compare
LRK53_RS02290 +0.4 0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK53_RS09925 +0.4 1.4 Hg(II)-responsive transcriptional regulator compare
LRK53_RS18980 +0.4 1.0 hypothetical protein compare
LRK53_RS00735 +0.4 2.8 efflux transporter outer membrane subunit compare
LRK53_RS09520 +0.4 0.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS08230 +0.4 1.5 DUF2147 domain-containing protein compare
LRK53_RS10340 +0.4 1.7 hypothetical protein compare
LRK53_RS19175 +0.4 0.8 hypothetical protein compare
LRK53_RS18835 +0.4 2.2 TraB/VirB10 family protein compare
LRK53_RS18285 +0.4 1.5 hypothetical protein compare
LRK53_RS10250 +0.4 0.8 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS18390 +0.4 0.9 hypothetical protein compare
LRK53_RS15005 +0.4 1.7 flagellar biosynthesis protein FlhF compare
LRK53_RS03730 +0.4 1.8 uracil-DNA glycosylase compare
LRK53_RS01170 +0.4 3.1 thiol:disulfide interchange protein DsbA/DsbL compare
LRK53_RS14405 +0.4 1.2 hypothetical protein compare
LRK53_RS10680 +0.4 1.1 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS01985 +0.4 3.0 DISARM system SNF2-like helicase DrmD compare
LRK53_RS12545 +0.4 1.0 hypothetical protein compare
LRK53_RS00905 +0.4 1.4 response regulator compare
LRK53_RS02030 +0.4 2.7 phospholipase D family protein compare
LRK53_RS03970 +0.4 1.3 hypothetical protein compare
LRK53_RS13070 +0.4 0.8 OsmC family protein compare
LRK53_RS16450 +0.4 2.0 methyltransferase domain-containing protein compare
LRK53_RS06640 +0.4 1.1 ribonuclease HII compare
LRK53_RS01025 +0.4 1.4 hypothetical protein compare
LRK53_RS13960 +0.4 1.2 LysE family transporter compare
LRK53_RS10190 +0.4 1.4 chaperonin GroEL compare
LRK53_RS10760 +0.4 1.7 helix-turn-helix domain-containing protein compare
LRK53_RS10685 +0.4 1.6 hypothetical protein compare
LRK53_RS17990 +0.4 1.3 energy transducer TonB compare
LRK53_RS00935 +0.4 0.9 monovalent cation/H(+) antiporter subunit G compare
LRK53_RS02805 +0.3 1.8 TIGR03862 family flavoprotein compare
LRK53_RS04605 +0.3 0.9 DUF4442 domain-containing protein compare
LRK53_RS11715 +0.3 1.8 NADH-quinone oxidoreductase subunit H compare
LRK53_RS13670 +0.3 0.6 acetyl-CoA C-acetyltransferase compare
LRK53_RS05175 +0.3 0.9 7-cyano-7-deazaguanine synthase QueC compare
LRK53_RS08220 +0.3 2.2 HAD family phosphatase compare
LRK53_RS04795 +0.3 0.9 IS5 family transposase compare
LRK53_RS19035 +0.3 1.8 DUF72 domain-containing protein compare
LRK53_RS01165 +0.3 2.6 thiol:disulfide interchange protein DsbA/DsbL compare
LRK53_RS16830 +0.3 1.1 PilZ domain-containing protein compare
LRK53_RS12885 +0.3 0.7 GNAT family N-acetyltransferase compare
LRK53_RS01830 +0.3 0.8 hypothetical protein compare
LRK53_RS08150 +0.3 2.2 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS18415 +0.3 1.5 hypothetical protein compare
LRK53_RS18265 +0.3 0.9 hypothetical protein compare
LRK53_RS14810 +0.3 0.4 DUF3301 domain-containing protein compare
LRK53_RS10295 +0.3 1.2 YCF48-related protein compare
LRK53_RS07060 +0.3 1.6 hypothetical protein compare
LRK53_RS14210 +0.3 1.6 nucleotidyltransferase family protein compare
LRK53_RS02000 +0.3 3.0 DISARM system helicase DrmA compare
LRK53_RS12495 +0.3 2.0 PLP-dependent aminotransferase family protein compare
LRK53_RS04145 +0.3 1.2 hypothetical protein compare
LRK53_RS17525 +0.3 1.7 hypothetical protein compare
LRK53_RS11500 +0.3 1.8 SDR family oxidoreductase compare
LRK53_RS07810 +0.3 2.5 PilX N-terminal domain-containing pilus assembly protein compare
LRK53_RS13655 +0.3 0.7 SCP2 sterol-binding domain-containing protein compare
LRK53_RS10665 +0.3 2.1 hypothetical protein compare
LRK53_RS13860 +0.3 2.0 methionine ABC transporter ATP-binding protein compare
LRK53_RS16385 +0.3 1.9 isochorismatase family protein compare
LRK53_RS03110 +0.3 1.5 3-isopropylmalate dehydratase large subunit compare
LRK53_RS14350 +0.3 1.3 Spx/MgsR family RNA polymerase-binding regulatory protein compare
LRK53_RS02105 +0.3 2.2 hypothetical protein compare
LRK53_RS16800 +0.3 1.6 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase compare
LRK53_RS03620 +0.3 1.0 ABC transporter permease compare
LRK53_RS17735 +0.3 2.1 leucyl aminopeptidase family protein compare
LRK53_RS05925 +0.3 1.7 A24 family peptidase compare
LRK53_RS00295 +0.3 0.5 hypothetical protein compare
LRK53_RS02750 +0.3 1.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
LRK53_RS09105 +0.3 1.8 S-methyl-5-thioribose-1-phosphate isomerase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; biofilm sample experiments