Experiment set2S14 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Guanosine 0.35306 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS02645 -2.1 -2.0 cobalamin biosynthesis protein CbiG compare
A4249_RS00100 -2.0 -2.7 PadR family transcriptional regulator compare
A4249_RS01590 -1.7 -2.0 site-specific DNA-methyltransferase compare
A4249_RS09075 -1.6 -2.4 hypothetical protein compare
A4249_RS12260 -1.5 -2.0 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS12470 -1.5 -1.8 histidinol-phosphatase compare
A4249_RS09035 -1.4 -1.9 redox-regulated ATPase YchF compare
A4249_RS07060 -1.4 -1.4 single-stranded DNA-binding protein compare
A4249_RS08865 -1.3 -1.6 DUF1192 domain-containing protein compare
A4249_RS10990 -1.3 -2.1 ATP-dependent protease ATPase subunit HslU compare
A4249_RS04215 -1.3 -2.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS10390 -1.3 -1.9 translation elongation factor 4 compare
A4249_RS13760 -1.2 -1.8 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS04450 -1.2 -2.4 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS08855 -1.2 -2.3 L,D-transpeptidase family protein compare
A4249_RS06230 -1.2 -1.6 OmpH family outer membrane protein compare
A4249_RS12795 -1.2 -1.4 DsbE family thiol:disulfide interchange protein compare
A4249_RS07645 -1.2 -2.3 fumarylacetoacetate hydrolase family protein compare
A4249_RS14905 -1.2 -2.1 phosphonate ABC transporter ATP-binding protein compare
A4249_RS16155 -1.1 -1.3 tRNA-Glu compare
A4249_RS15865 -1.1 -1.5 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS11125 -1.1 -5.8 glycosyltransferase family 9 protein compare
A4249_RS06785 -1.1 -2.2 endolytic transglycosylase MltG compare
A4249_RS07320 -1.1 -2.0 hypothetical protein compare
A4249_RS03440 -1.1 -1.4 hypothetical protein compare
A4249_RS01610 -1.1 -1.1 TetR/AcrR family transcriptional regulator compare
A4249_RS17085 -1.1 -1.1 sugar O-acetyltransferase compare
A4249_RS04080 -1.1 -3.1 M48 family metalloprotease compare
A4249_RS06435 -1.0 -1.0 tRNA-Asp compare
A4249_RS00925 -1.0 -1.8 multidrug efflux SMR transporter compare
A4249_RS16585 -1.0 -2.1 hypothetical protein compare
A4249_RS05900 -0.9 -1.6 hypothetical protein compare
A4249_RS01635 -0.9 -1.5 ABC transporter ATP-binding protein compare
A4249_RS10245 -0.9 -2.8 MucR family transcriptional regulator compare
A4249_RS08300 -0.9 -1.4 cold-shock protein compare
A4249_RS04350 -0.8 -1.8 lipopolysaccharide biosynthesis protein compare
A4249_RS05620 -0.8 -4.2 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS13060 -0.8 -5.9 AGE family epimerase/isomerase compare
A4249_RS02905 -0.8 -1.3 tRNA guanosine(34) transglycosylase Tgt compare
A4249_RS08685 -0.8 -2.3 hypothetical protein compare
A4249_RS07895 -0.8 -1.5 VOC family protein compare
A4249_RS04085 -0.8 -1.6 ribonuclease E/G compare
A4249_RS12205 -0.8 -0.9 DUF484 family protein compare
A4249_RS11720 -0.7 -0.9 strawberry notch C-terminal domain-containing protein compare
A4249_RS05405 -0.7 -2.6 hypothetical protein compare
A4249_RS09605 -0.7 -1.1 DUF6468 domain-containing protein compare
A4249_RS08885 -0.7 -1.7 DUF465 domain-containing protein compare
A4249_RS10915 -0.7 -1.2 hypothetical protein compare
A4249_RS14895 -0.7 -1.7 phosphonate ABC transporter, permease protein PhnE compare
A4249_RS09275 -0.7 -2.0 DUF3035 domain-containing protein compare
A4249_RS05960 -0.7 -1.9 MerR family transcriptional regulator compare
A4249_RS01230 -0.7 -0.8 hypothetical protein compare
A4249_RS04475 -0.7 -1.3 response regulator transcription factor compare
A4249_RS11150 -0.7 -3.0 capsular biosynthesis protein compare
A4249_RS13200 -0.7 -1.5 thiamine pyrophosphate-dependent enzyme compare
A4249_RS12390 -0.7 -1.8 ATP-dependent protease subunit HslV compare
A4249_RS15660 -0.7 -1.6 hypothetical protein compare
A4249_RS10115 -0.7 -1.3 phage tail tape measure protein compare
A4249_RS13190 -0.6 -1.7 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS10050 -0.6 -3.3 fructose-bisphosphate aldolase class II compare
A4249_RS04020 -0.6 -1.6 energy transducer TonB compare
A4249_RS14025 -0.6 -1.1 CHAP domain-containing protein compare
A4249_RS14840 -0.6 -2.1 carboxynorspermidine decarboxylase compare
A4249_RS05625 -0.6 -5.1 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS13560 -0.6 -1.5 glutaredoxin 3 compare
A4249_RS00260 -0.6 -1.5 YqgE/AlgH family protein compare
A4249_RS10375 -0.6 -2.3 DUF1491 family protein compare
A4249_RS10965 -0.6 -0.7 response regulator compare
A4249_RS06165 -0.6 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS07665 -0.6 -1.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS07610 -0.6 -0.7 methyltransferase type 11 compare
A4249_RS08805 -0.6 -3.4 HAMP domain-containing sensor histidine kinase compare
A4249_RS12830 -0.6 -1.6 YkvA family protein compare
A4249_RS08825 -0.6 -1.9 tryptophan-rich sensory protein compare
A4249_RS12210 -0.6 -1.1 tyrosine recombinase XerC compare
A4249_RS04810 -0.6 -2.8 tRNA dihydrouridine synthase DusB compare
A4249_RS11805 -0.6 -0.7 SOS response-associated peptidase compare
A4249_RS15875 -0.6 -1.0 hypothetical protein compare
A4249_RS16790 -0.6 -1.6 hypothetical protein compare
A4249_RS12085 -0.6 -1.1 DUF883 family protein compare
A4249_RS12825 -0.6 -1.1 SDR family oxidoreductase compare
A4249_RS11575 -0.6 -1.1 YeeE/YedE family protein compare
A4249_RS16685 -0.6 -0.6 tRNA-Arg compare
A4249_RS06465 -0.5 -1.2 hypothetical protein compare
A4249_RS05730 -0.5 -0.9 uracil-DNA glycosylase compare
A4249_RS07920 -0.5 -2.1 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS04635 -0.5 -4.4 cyclic nucleotide-binding domain-containing protein compare
A4249_RS04210 -0.5 -2.0 TMEM175 family protein compare
A4249_RS12295 -0.5 -1.2 trehalose-phosphatase compare
A4249_RS12980 -0.5 -4.7 GDP-mannose 4,6-dehydratase compare
A4249_RS07115 -0.5 -1.7 hypothetical protein compare
A4249_RS13590 -0.5 -2.3 [protein-PII] uridylyltransferase compare
A4249_RS13070 -0.5 -3.4 phosphomannomutase/phosphoglucomutase compare
A4249_RS16150 -0.5 -1.1 hypothetical protein compare
A4249_RS14700 -0.5 -1.4 helix-turn-helix transcriptional regulator compare
A4249_RS13030 -0.5 -3.1 glycosyltransferase family 1 protein compare
A4249_RS01725 -0.5 -1.6 hypothetical protein compare
A4249_RS09315 -0.5 -1.3 class 1 fructose-bisphosphatase compare
A4249_RS09405 -0.5 -0.9 beta-N-acetylhexosaminidase compare
A4249_RS09765 -0.5 -1.8 sigma-54 dependent transcriptional regulator compare
A4249_RS07170 -0.5 -2.3 hypothetical protein compare
A4249_RS00080 -0.5 -2.0 DUF3298 and DUF4163 domain-containing protein compare
A4249_RS11210 -0.5 -2.2 hypothetical protein compare
A4249_RS12315 -0.5 -1.1 hypothetical protein compare
A4249_RS01300 -0.5 -2.6 gpW family head-tail joining protein compare
A4249_RS14190 -0.5 -2.3 hypothetical protein compare
A4249_RS14715 -0.5 -1.8 PhoH family protein compare
A4249_RS12455 -0.5 -1.1 hypothetical protein compare
A4249_RS16265 -0.5 -0.8 helix-turn-helix domain-containing protein compare
A4249_RS12970 -0.5 -1.8 glycosyltransferase family 61 protein compare
A4249_RS06780 -0.5 -0.7 YicC family protein compare
A4249_RS03375 -0.5 -1.5 ferredoxin compare
A4249_RS10360 -0.5 -0.7 HAMP domain-containing sensor histidine kinase compare
A4249_RS11795 -0.5 -0.6 DUF2493 domain-containing protein compare
A4249_RS05160 -0.5 -1.1 response regulator compare
A4249_RS08510 -0.5 -1.2 hypothetical protein compare
A4249_RS07740 -0.4 -1.9 mannitol dehydrogenase family protein compare
A4249_RS00105 -0.4 -2.8 cytochrome c oxidase subunit II compare
A4249_RS07185 -0.4 -1.8 hypothetical protein compare
A4249_RS10815 -0.4 -1.1 Do family serine endopeptidase compare
A4249_RS00055 -0.4 -1.5 methyltransferase compare
A4249_RS10370 -0.4 -2.0 hypothetical protein compare
A4249_RS07120 -0.4 -0.7 hypothetical protein compare
A4249_RS01405 -0.4 -1.4 hypothetical protein compare
A4249_RS04460 -0.4 -1.4 cytochrome o ubiquinol oxidase subunit IV compare
A4249_RS14675 -0.4 -1.5 metallopeptidase family protein compare
A4249_RS09515 -0.4 -1.0 hypothetical protein compare
A4249_RS13575 -0.4 -1.8 GNAT family N-acetyltransferase compare
A4249_RS14515 -0.4 -3.2 enoyl-CoA hydratase-related protein compare
A4249_RS08775 -0.4 -1.0 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
A4249_RS08730 -0.4 -2.6 hypothetical protein compare
A4249_RS11230 -0.4 -1.7 DUF1453 family protein compare
A4249_RS04125 -0.4 -0.9 mechanosensitive ion channel family protein compare
A4249_RS13640 -0.4 -0.8 molecular chaperone DnaJ compare
A4249_RS14870 -0.4 -1.6 DUF3597 family protein compare
A4249_RS16520 -0.4 -1.6 hypothetical protein compare
A4249_RS02735 -0.4 -1.3 flagellin compare
A4249_RS13305 -0.4 -1.4 YraN family protein compare
A4249_RS00050 -0.4 -0.5 type 1 glutamine amidotransferase compare
A4249_RS08370 -0.4 -1.7 polysaccharide deacetylase family protein compare
A4249_RS04400 -0.4 -2.5 type 2 isopentenyl-diphosphate Delta-isomerase compare
A4249_RS01275 -0.4 -1.9 hypothetical protein compare
A4249_RS05555 -0.4 -1.7 DNA repair protein RecO compare
A4249_RS13180 -0.4 -0.6 SDR family oxidoreductase compare
A4249_RS01460 -0.4 -0.6 signal peptide peptidase SppA compare
A4249_RS14780 -0.4 -1.4 NepR family anti-sigma factor compare
A4249_RS12170 -0.4 -1.5 hypothetical protein compare
A4249_RS01815 -0.4 -0.9 DNA mismatch endonuclease Vsr compare
A4249_RS13025 -0.4 -2.8 hypothetical protein compare
A4249_RS00110 -0.4 -3.1 cytochrome c oxidase subunit I compare
A4249_RS10430 -0.4 -2.0 S1/P1 Nuclease compare
A4249_RS02260 -0.4 -1.6 cation:proton antiporter compare
A4249_RS10630 -0.4 -1.6 FAD:protein FMN transferase compare
A4249_RS08550 -0.4 -0.5 flagellar basal-body protein FlbY compare
A4249_RS02380 -0.4 -1.9 HlyD family secretion protein compare
A4249_RS00605 -0.4 -0.6 host attachment protein compare
A4249_RS14975 -0.4 -1.4 creatininase family protein compare
A4249_RS11435 -0.4 -3.7 YdcF family protein compare
A4249_RS04190 -0.4 -1.2 MliC family protein compare
A4249_RS07190 -0.4 -1.3 hypothetical protein compare
A4249_RS14795 -0.4 -2.0 acyl dehydratase compare
A4249_RS06455 -0.4 -0.8 HU family DNA-binding protein compare
A4249_RS11285 -0.4 -0.9 double-strand break repair protein AddB compare
A4249_RS14740 -0.4 -0.7 NifU family protein compare
A4249_RS16420 -0.4 -1.1 hypothetical protein compare
A4249_RS00270 -0.4 -0.6 very short patch repair endonuclease compare
A4249_RS05040 -0.4 -2.0 NADH:flavin oxidoreductase compare
A4249_RS09830 -0.4 -1.6 ATP-binding protein compare
A4249_RS14605 -0.4 -1.6 glycosyltransferase family 2 protein compare
A4249_RS14545 -0.4 -1.3 metallophosphoesterase compare
A4249_RS13805 -0.4 -0.4 HAD family hydrolase compare
A4249_RS00525 -0.4 -2.1 molybdopterin-binding protein compare
A4249_RS16570 -0.4 -1.3 hypothetical protein compare
A4249_RS08820 -0.4 -1.6 bacterioferritin compare
A4249_RS00380 -0.4 -1.6 MerR family DNA-binding transcriptional regulator compare
A4249_RS07485 -0.4 -1.6 hypothetical protein compare
A4249_RS01785 -0.4 -1.8 DUF5681 domain-containing protein compare
A4249_RS16250 -0.4 -0.8 DUF3606 domain-containing protein compare
A4249_RS00395 -0.4 -1.0 DUF2975 domain-containing protein compare
A4249_RS04200 -0.4 -1.2 pseudouridine synthase compare
A4249_RS14825 -0.4 -1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS11905 -0.4 -1.0 hypothetical protein compare
A4249_RS11610 -0.4 -1.6 alginate export family protein compare
A4249_RS13615 -0.4 -1.0 Rrf2 family transcriptional regulator compare
A4249_RS06525 -0.4 -0.5 SCP2 sterol-binding domain-containing protein compare
A4249_RS08535 -0.4 -0.5 flagellar assembly protein FliX compare
A4249_RS07105 -0.4 -0.6 hypothetical protein compare
A4249_RS04445 -0.4 -2.2 ubiquinol oxidase subunit II compare
A4249_RS08355 -0.4 -2.0 response regulator compare
A4249_RS11675 -0.4 -1.3 hypothetical protein compare
A4249_RS00225 -0.4 -1.1 TetR family transcriptional regulator compare
A4249_RS05745 -0.3 -1.4 ImmA/IrrE family metallo-endopeptidase compare
A4249_RS00240 -0.3 -0.6 rhodanese family protein compare
A4249_RS10820 -0.3 -0.6 cytochrome c-type biogenesis protein CcmH compare
A4249_RS07135 -0.3 -1.8 hypothetical protein compare
A4249_RS14620 -0.3 -1.3 hypothetical protein compare
A4249_RS12375 -0.3 -0.6 hypothetical protein compare
A4249_RS13620 -0.3 -2.0 dienelactone hydrolase family protein compare
A4249_RS01705 -0.3 -0.7 hypothetical protein compare
A4249_RS01535 -0.3 -1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Guanosine across organisms