Experiment set2S135 for Escherichia coli ECRC102
Casamino-acids
Group: carbon sourceMedia: M9_plus_Casamino-acids + Casamino-acids (5 mg/mL)
Culturing: Ecoli_ECRC102_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/16/24
Specific Phenotypes
For 1 genes in this experiment
For carbon source Casamino-acids in Escherichia coli ECRC102
For carbon source Casamino-acids across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Coenzyme A Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Ascorbate and aldarate metabolism
- C21-Steroid hormone metabolism
- Glycine, serine and threonine metabolism
- Bisphenol A degradation
- Nucleotide sugars metabolism
- Polyketide sugar unit biosynthesis
- Aminosugars metabolism
- Linoleic acid metabolism
- Tetrachloroethene degradation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Pantothenate and CoA biosynthesis
- Retinol metabolism
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide products
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| phosphopantothenate biosynthesis I | 4 | 4 | 1 |
| phosphopantothenate biosynthesis III (archaea) | 4 | 2 | 1 |
| superpathway of coenzyme A biosynthesis I (bacteria) | 9 | 9 | 1 |
| superpathway of coenzyme A biosynthesis II (plants) | 10 | 5 | 1 |