Experiment set2S13 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Guanosine 0.35306 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS12640 -2.2 -2.3 hypothetical protein compare
A4249_RS12210 -2.0 -3.0 tyrosine recombinase XerC compare
A4249_RS01590 -1.8 -2.1 site-specific DNA-methyltransferase compare
A4249_RS02325 -1.8 -2.0 23S ribosomal RNA compare
A4249_RS10295 -1.5 -1.6 hypothetical protein compare
A4249_RS08510 -1.5 -3.3 hypothetical protein compare
A4249_RS15865 -1.4 -1.9 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS08495 -1.4 -1.3 Na+/H+ antiporter subunit E compare
A4249_RS07050 -1.3 -1.9 hypothetical protein compare
A4249_RS01460 -1.3 -1.5 signal peptide peptidase SppA compare
A4249_RS08855 -1.3 -2.4 L,D-transpeptidase family protein compare
A4249_RS02905 -1.3 -1.7 tRNA guanosine(34) transglycosylase Tgt compare
A4249_RS01415 -1.2 -1.5 phage Gp37/Gp68 family protein compare
A4249_RS09075 -1.2 -2.2 hypothetical protein compare
A4249_RS01190 -1.2 -2.4 hypothetical protein compare
A4249_RS16455 -1.2 -1.5 helix-turn-helix transcriptional regulator compare
A4249_RS08025 -1.2 -2.4 DUF2155 domain-containing protein compare
A4249_RS10360 -1.2 -1.3 HAMP domain-containing sensor histidine kinase compare
A4249_RS03690 -1.1 -1.0 hypothetical protein compare
A4249_RS14905 -1.1 -2.0 phosphonate ABC transporter ATP-binding protein compare
A4249_RS13200 -1.1 -2.2 thiamine pyrophosphate-dependent enzyme compare
A4249_RS11225 -1.1 -2.3 fumarylacetoacetate hydrolase family protein compare
A4249_RS01815 -1.1 -3.4 DNA mismatch endonuclease Vsr compare
A4249_RS06230 -1.1 -1.5 OmpH family outer membrane protein compare
A4249_RS04475 -1.0 -1.6 response regulator transcription factor compare
A4249_RS13535 -1.0 -2.7 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS04220 -1.0 -2.9 low molecular weight phosphotyrosine protein phosphatase compare
A4249_RS02635 -1.0 -0.8 RNA polymerase sigma factor compare
A4249_RS11125 -0.9 -5.5 glycosyltransferase family 9 protein compare
A4249_RS11795 -0.9 -1.4 DUF2493 domain-containing protein compare
A4249_RS13195 -0.9 -2.9 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS04490 -0.9 -1.6 cobaltochelatase subunit CobS compare
A4249_RS11285 -0.9 -2.1 double-strand break repair protein AddB compare
A4249_RS10125 -0.9 -1.6 phage major tail protein, TP901-1 family compare
A4249_RS05620 -0.9 -4.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS14025 -0.8 -1.4 CHAP domain-containing protein compare
A4249_RS07665 -0.8 -1.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS16725 -0.8 -1.1 hypothetical protein compare
A4249_RS14740 -0.8 -1.4 NifU family protein compare
A4249_RS16425 -0.8 -1.2 hypothetical protein compare
A4249_RS07290 -0.8 -1.7 ribonuclease E/G compare
A4249_RS16280 -0.8 -1.9 general stress protein compare
A4249_RS12970 -0.8 -2.9 glycosyltransferase family 61 protein compare
A4249_RS13060 -0.8 -5.8 AGE family epimerase/isomerase compare
A4249_RS16155 -0.8 -0.8 tRNA-Glu compare
A4249_RS16085 -0.8 -1.2 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS13960 -0.8 -1.5 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
A4249_RS12305 -0.7 -2.4 glycosyltransferase family 1 protein compare
A4249_RS10110 -0.7 -0.9 DUF805 domain-containing protein compare
A4249_RS00080 -0.7 -2.0 DUF3298 and DUF4163 domain-containing protein compare
A4249_RS05900 -0.7 -1.2 hypothetical protein compare
A4249_RS10710 -0.7 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
A4249_RS12225 -0.7 -1.0 SDR family oxidoreductase compare
A4249_RS09405 -0.7 -1.3 beta-N-acetylhexosaminidase compare
A4249_RS15875 -0.7 -1.8 hypothetical protein compare
A4249_RS04210 -0.7 -2.1 TMEM175 family protein compare
A4249_RS14205 -0.7 -1.4 response regulator compare
A4249_RS05980 -0.7 -1.1 DUF177 domain-containing protein compare
A4249_RS06665 -0.7 -0.9 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS02820 -0.7 -1.1 Ppx/GppA phosphatase family protein compare
A4249_RS02395 -0.7 -1.7 FecR domain-containing protein compare
A4249_RS13125 -0.7 -1.6 ribonuclease PH compare
A4249_RS08825 -0.7 -2.6 tryptophan-rich sensory protein compare
A4249_RS06855 -0.7 -2.1 hypothetical protein compare
A4249_RS02620 -0.6 -3.4 DNA repair protein RecN compare
A4249_RS13070 -0.6 -4.5 phosphomannomutase/phosphoglucomutase compare
A4249_RS10375 -0.6 -2.5 DUF1491 family protein compare
A4249_RS06680 -0.6 -1.2 tipN compare
A4249_RS07200 -0.6 -1.6 hypothetical protein compare
A4249_RS07470 -0.6 -0.7 hypothetical protein compare
A4249_RS00830 -0.6 -1.8 hypothetical protein compare
A4249_RS06180 -0.6 -2.2 transcriptional repressor LexA compare
A4249_RS05625 -0.6 -4.9 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS15275 -0.6 -2.0 peptide chain release factor 3 compare
A4249_RS16695 -0.6 -1.4 potassium-transporting ATPase subunit F compare
A4249_RS07920 -0.6 -2.5 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS11720 -0.6 -0.5 strawberry notch C-terminal domain-containing protein compare
A4249_RS01610 -0.6 -0.6 TetR/AcrR family transcriptional regulator compare
A4249_RS11150 -0.6 -2.9 capsular biosynthesis protein compare
A4249_RS09830 -0.6 -2.3 ATP-binding protein compare
A4249_RS05640 -0.6 -1.8 NfeD family protein compare
A4249_RS01010 -0.5 -3.0 capsular polysaccharide biosynthesis protein compare
A4249_RS04450 -0.5 -1.3 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS14780 -0.5 -2.1 NepR family anti-sigma factor compare
A4249_RS10915 -0.5 -1.2 hypothetical protein compare
A4249_RS08870 -0.5 -2.7 NAD(P)H-quinone oxidoreductase compare
A4249_RS14845 -0.5 -3.2 saccharopine dehydrogenase family protein compare
A4249_RS10815 -0.5 -1.2 Do family serine endopeptidase compare
A4249_RS01265 -0.5 -2.1 hypothetical protein compare
A4249_RS00895 -0.5 -1.0 DUF1476 domain-containing protein compare
A4249_RS06455 -0.5 -1.1 HU family DNA-binding protein compare
A4249_RS04960 -0.5 -1.7 UvrD-helicase domain-containing protein compare
A4249_RS03570 -0.5 -1.0 TonB family protein compare
A4249_RS00110 -0.5 -3.9 cytochrome c oxidase subunit I compare
A4249_RS03730 -0.5 -1.9 SDR family NAD(P)-dependent oxidoreductase compare
A4249_RS14135 -0.5 -0.5 ATP-binding protein compare
A4249_RS07190 -0.5 -1.6 hypothetical protein compare
A4249_RS12150 -0.5 -1.8 PTS sugar transporter subunit IIA compare
A4249_RS04690 -0.5 -2.7 hemerythrin domain-containing protein compare
A4249_RS08520 -0.5 -1.0 hypothetical protein compare
A4249_RS11505 -0.5 -2.3 TlpA disulfide reductase family protein compare
A4249_RS16570 -0.5 -1.8 hypothetical protein compare
A4249_RS07940 -0.5 -1.4 hypothetical protein compare
A4249_RS04995 -0.5 -1.0 DUF2171 domain-containing protein compare
A4249_RS07145 -0.5 -1.0 hypothetical protein compare
A4249_RS00180 -0.5 -0.4 hypothetical protein compare
A4249_RS07335 -0.5 -1.4 peptide-methionine (R)-S-oxide reductase MsrB compare
A4249_RS14580 -0.5 -0.8 hypothetical protein compare
A4249_RS10185 -0.5 -2.1 hypothetical protein compare
A4249_RS02975 -0.5 -1.4 oligosaccharide flippase family protein compare
A4249_RS13630 -0.5 -2.6 hypothetical protein compare
A4249_RS06155 -0.5 -1.7 anthranilate synthase component I compare
A4249_RS04445 -0.5 -2.4 ubiquinol oxidase subunit II compare
A4249_RS08905 -0.4 -1.1 M23 family metallopeptidase compare
A4249_RS14155 -0.4 -1.2 thioredoxin compare
A4249_RS14255 -0.4 -0.6 ribonuclease P protein component compare
A4249_RS13030 -0.4 -2.6 glycosyltransferase family 1 protein compare
A4249_RS08375 -0.4 -0.7 hypothetical protein compare
A4249_RS05390 -0.4 -1.1 SOS response-associated peptidase family protein compare
A4249_RS00285 -0.4 -1.2 DUF952 domain-containing protein compare
A4249_RS14870 -0.4 -1.5 DUF3597 family protein compare
A4249_RS13760 -0.4 -0.8 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS05375 -0.4 -2.4 damage-inducible protein compare
A4249_RS09940 -0.4 -2.5 sugar MFS transporter compare
A4249_RS10785 -0.4 -0.6 hypothetical protein compare
A4249_RS02560 -0.4 -2.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
A4249_RS11030 -0.4 -1.5 hypothetical protein compare
A4249_RS12275 -0.4 -1.3 cobaltochelatase subunit CobT compare
A4249_RS02725 -0.4 -1.3 hypothetical protein compare
A4249_RS01285 -0.4 -1.5 head decoration protein compare
A4249_RS11985 -0.4 -1.4 hypothetical protein compare
A4249_RS04765 -0.4 -1.6 ATP-dependent DNA helicase RecG compare
A4249_RS14065 -0.4 -1.2 MFS transporter compare
A4249_RS06895 -0.4 -1.6 hypothetical protein compare
A4249_RS00270 -0.4 -0.7 very short patch repair endonuclease compare
A4249_RS15980 -0.4 -1.1 multidrug efflux SMR transporter compare
A4249_RS16585 -0.4 -0.9 hypothetical protein compare
A4249_RS07135 -0.4 -2.4 hypothetical protein compare
A4249_RS09500 -0.4 -1.9 3-oxoacyl-ACP reductase compare
A4249_RS07175 -0.4 -2.9 hypothetical protein compare
A4249_RS05595 -0.4 -1.1 dicarboxylate/amino acid:cation symporter compare
A4249_RS09730 -0.4 -1.9 CsbD family protein compare
A4249_RS16010 -0.4 -0.7 flagellar type III secretion system pore protein FliP compare
A4249_RS06550 -0.4 -1.5 chorismate mutase compare
A4249_RS10390 -0.4 -0.8 translation elongation factor 4 compare
A4249_RS14830 -0.4 -1.0 peptidoglycan DD-metalloendopeptidase family protein compare
A4249_RS04485 -0.4 -0.5 phage holin family protein compare
A4249_RS09195 -0.4 -1.3 TldD/PmbA family protein compare
A4249_RS00105 -0.4 -2.7 cytochrome c oxidase subunit II compare
A4249_RS12650 -0.4 -2.3 LLM class flavin-dependent oxidoreductase compare
A4249_RS10430 -0.4 -2.0 S1/P1 Nuclease compare
A4249_RS05985 -0.4 -1.8 ubiquinol-cytochrome C chaperone family protein compare
A4249_RS13610 -0.4 -1.3 NAD(P)/FAD-dependent oxidoreductase compare
A4249_RS12025 -0.4 -1.5 Flp pilus assembly protein CpaB compare
A4249_RS09600 -0.4 -1.7 hypothetical protein compare
A4249_RS02675 -0.4 -1.5 N-acetyltransferase compare
A4249_RS07895 -0.4 -0.7 VOC family protein compare
A4249_RS01765 -0.4 -1.3 DUF3489 domain-containing protein compare
A4249_RS07960 -0.4 -2.1 DUF1499 domain-containing protein compare
A4249_RS13545 -0.4 -0.9 Flp family type IVb pilin compare
A4249_RS10570 -0.4 -1.0 DUF1428 domain-containing protein compare
A4249_RS05790 -0.4 -1.5 transmembrane anchor protein compare
A4249_RS00225 -0.4 -1.5 TetR family transcriptional regulator compare
A4249_RS00100 -0.4 -0.7 PadR family transcriptional regulator compare
A4249_RS04080 -0.4 -1.2 M48 family metalloprotease compare
A4249_RS00600 -0.4 -1.6 LamG domain-containing protein compare
A4249_RS03175 -0.4 -1.4 ParB N-terminal domain-containing protein compare
A4249_RS00310 -0.4 -1.4 acetoacetyl-CoA reductase compare
A4249_RS03065 -0.4 -1.0 arsenate reductase (glutaredoxin) compare
A4249_RS12980 -0.4 -2.9 GDP-mannose 4,6-dehydratase compare
A4249_RS01645 -0.4 -1.7 crotonase/enoyl-CoA hydratase family protein compare
A4249_RS02840 -0.3 -1.3 N-succinylarginine dihydrolase compare
A4249_RS16520 -0.3 -1.5 hypothetical protein compare
A4249_RS07170 -0.3 -1.6 hypothetical protein compare
A4249_RS00950 -0.3 -1.4 tetratricopeptide repeat protein compare
A4249_RS00810 -0.3 -2.1 glycosyltransferase family 4 protein compare
A4249_RS03665 -0.3 -2.0 ArsC family reductase compare
A4249_RS14835 -0.3 -1.5 S41 family peptidase compare
A4249_RS11740 -0.3 -1.4 isoprenylcysteine carboxylmethyltransferase family protein compare
A4249_RS04635 -0.3 -2.9 cyclic nucleotide-binding domain-containing protein compare
A4249_RS01670 -0.3 -1.2 excinuclease ABC subunit UvrC compare
A4249_RS16550 -0.3 -1.1 hypothetical protein compare
A4249_RS15890 -0.3 -1.7 hypothetical protein compare
A4249_RS10855 -0.3 -1.8 hypothetical protein compare
A4249_RS13450 -0.3 -0.5 PilZ domain-containing protein compare
A4249_RS02485 -0.3 -1.0 methylmalonyl-CoA mutase family protein compare
A4249_RS14455 -0.3 -1.7 response regulator compare
A4249_RS09625 -0.3 -1.9 flagellar basal-body rod protein FlgG compare
A4249_RS08145 -0.3 -1.3 NAD(P)H-binding protein compare
A4249_RS07150 -0.3 -2.1 hypothetical protein compare
A4249_RS08705 -0.3 -1.4 response regulator compare
A4249_RS02380 -0.3 -1.8 HlyD family secretion protein compare
A4249_RS07110 -0.3 -2.0 DUF4043 family protein compare
A4249_RS03455 -0.3 -1.5 cysteine hydrolase compare
A4249_RS04215 -0.3 -0.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS11365 -0.3 -0.8 cation diffusion facilitator family transporter compare
A4249_RS12230 -0.3 -1.6 hypothetical protein compare
A4249_RS11435 -0.3 -3.0 YdcF family protein compare
A4249_RS12295 -0.3 -0.9 trehalose-phosphatase compare
A4249_RS13970 -0.3 -1.3 amidohydrolase family protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Guanosine across organisms