Experiment set2S111 for Escherichia coli ECRC102

Compare to:

L-Arabinose

200 most important genes:

  gene name fitness t score description  
NIAGMN_08580 leuD -6.6 -4.3 3-isopropylmalate dehydratase small subunit compare
NIAGMN_08195 dksA -5.6 -8.8 RNA polymerase-binding protein DksA compare
NIAGMN_22465 hisG -5.5 -1.8 ATP phosphoribosyltransferase compare
NIAGMN_19700 purC -5.4 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
NIAGMN_05890 purE -5.3 -2.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
NIAGMN_23470 -5.2 -0.9 DUF826 domain-containing protein compare
NIAGMN_06550 secD -5.1 -0.9 Protein translocase subunit SecD compare
NIAGMN_08575 leuC1 -5.1 -13.6 3-isopropylmalate dehydratase large subunit 1 compare
NIAGMN_26115 -5.1 -0.9 Endopeptidase of prophage CP-933N compare
NIAGMN_00365 mdtI -5.1 -0.9 multidrug/spermidine efflux SMR transporter subunit MdtI compare
NIAGMN_11555 yiiR -5.1 -0.9 Uncharacterized protein YiiR compare
NIAGMN_11210 tuf -5.0 -1.5 elongation factor Tu compare
NIAGMN_22410 perB -5.0 -1.7 GDP-perosamine N-acetyltransferase compare
NIAGMN_04610 -5.0 -0.8 holin compare
NIAGMN_22655 nac -5.0 -0.8 nitrogen assimilation transcriptional regulator NAC compare
NIAGMN_03205 aroA -4.9 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
NIAGMN_22445 hisH -4.9 -1.7 imidazole glycerol phosphate synthase subunit HisH compare
NIAGMN_23640 -4.9 -0.8 protein hokC compare
NIAGMN_06290 ybaA -4.8 -0.8 Uncharacterized protein YbaA compare
NIAGMN_09050 serB -4.8 -7.8 phosphoserine phosphatase compare
NIAGMN_19420 iscX -4.7 -0.8 Fe-S cluster assembly protein IscX compare
NIAGMN_19600 arsC -4.6 -0.8 arsenate reductase (glutaredoxin) compare
NIAGMN_04870 tolQ -4.6 -1.3 Tol-Pal system protein TolQ compare
NIAGMN_08570 leuB -4.6 -12.9 3-isopropylmalate dehydrogenase compare
NIAGMN_23805 eAL -4.6 -0.8 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
NIAGMN_26200 -4.5 -0.8 hypothetical protein compare
NIAGMN_04975 sucA -4.4 -1.1 2-oxoglutarate dehydrogenase E1 component compare
NIAGMN_07660 -4.4 -0.7 dCTP deaminase compare
NIAGMN_22405 cpsG -4.3 -0.7 colanic acid biosynthesis phosphomannomutase CpsG compare
NIAGMN_17225 serA -4.3 -10.6 phosphoglycerate dehydrogenase compare
NIAGMN_26720 pyrF -4.2 -2.2 orotidine-5'-phosphate decarboxylase compare
NIAGMN_21440 yehW -4.2 -1.2 glycine betaine ABC transporter permease YehW compare
NIAGMN_19280 glyA -4.1 -3.9 serine hydroxymethyltransferase compare
NIAGMN_24170 flgE -4.1 -1.2 flagellar hook protein FlgE compare
NIAGMN_11420 metF -4.1 -11.6 methylenetetrahydrofolate reductase compare
NIAGMN_03210 serC -4.1 -2.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
NIAGMN_26245 ydaV -4.0 -1.5 Uncharacterized protein YdaV compare
NIAGMN_08950 thrC -4.0 -7.9 threonine synthase compare
NIAGMN_08640 araD -4.0 -8.9 L-ribulose-5-phosphate 4-epimerase compare
NIAGMN_01140 astE -4.0 -0.9 succinylglutamate desuccinylase compare
NIAGMN_03340 -3.9 -0.7 toxin compare
NIAGMN_20390 aroC -3.9 -5.1 chorismate synthase compare
NIAGMN_25195 ftrA -3.9 -1.1 transcriptional regulator FtrA compare
NIAGMN_15325 aroE -3.9 -12.5 shikimate dehydrogenase compare
NIAGMN_01105 chbB -3.8 -0.9 PTS N,N'-diacetylchitobiose transporter subunit IIB compare
NIAGMN_17510 araC -3.7 -1.7 AraC family transcriptional regulator compare
NIAGMN_04600 -3.7 -1.1 lysis protein compare
NIAGMN_22450 hisB -3.7 -3.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
NIAGMN_07530 proA -3.7 -11.8 glutamate-5-semialdehyde dehydrogenase compare
NIAGMN_12080 metE -3.6 -16.7 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase compare
NIAGMN_22460 hisD -3.6 -2.6 Histidinol dehydrogenase compare
NIAGMN_02955 ompA -3.6 -9.1 outer membrane protein A compare
NIAGMN_00655 mepH -3.6 -0.8 peptidoglycan DD-endopeptidase MepH compare
NIAGMN_16725 metC -3.5 -10.5 cystathionine beta-lyase compare
NIAGMN_22565 -3.5 -1.0 DUF932 domain-containing protein compare
NIAGMN_08565 -3.5 -12.2 2-isopropylmalate synthase compare
NIAGMN_25315 lsrA -3.5 -0.8 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
NIAGMN_23380 -3.5 -0.6 phage N-6-adenine-methyltransferase compare
NIAGMN_08955 thrB -3.5 -8.6 homoserine kinase compare
NIAGMN_28695 tap -3.4 -0.6 RepA leader peptide Tap compare
NIAGMN_20675 yfbM -3.4 -2.6 Protein YfbM compare
NIAGMN_25805 -3.4 -1.0 Regulatory protein mokB compare
NIAGMN_28935 -3.4 -1.0 Plasmid replication region DNA-binding N-term compare
NIAGMN_09490 -3.4 -0.8 Transposase compare
NIAGMN_09715 pyrB -3.4 -11.3 aspartate carbamoyltransferase compare
NIAGMN_18995 pheA -3.3 -8.8 bifunctional chorismate mutase/prephenate dehydratase compare
NIAGMN_12380 ilvC -3.3 -15.2 ketol-acid reductoisomerase compare
NIAGMN_22435 hisF -3.3 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
NIAGMN_09885 cysQ -3.3 -9.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
NIAGMN_14885 aroB -3.2 -7.7 3-dehydroquinate synthase compare
NIAGMN_04860 tolA -3.2 -1.3 cell envelope integrity protein TolA compare
NIAGMN_11060 purH -3.2 -13.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
NIAGMN_11855 glnA -3.2 -2.0 glutamate--ammonia ligase compare
NIAGMN_10080 purA -3.1 -12.1 adenylosuccinate synthase compare
NIAGMN_08790 carB -3.1 -13.3 carbamoyl-phosphate synthase large subunit compare
NIAGMN_19530 guaB -3.1 -7.1 IMP dehydrogenase compare
NIAGMN_00890 -3.1 -0.9 hypothetical protein compare
NIAGMN_12395 ilvD -3.1 -14.9 dihydroxy-acid dehydratase compare
NIAGMN_19580 purM -3.1 -8.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
NIAGMN_11325 argH -3.0 -10.3 argininosuccinate lyase compare
NIAGMN_13055 escS -3.0 -2.5 type III secretion system LEE export apparatus protein EscS compare
NIAGMN_27180 -2.9 -0.7 hypothetical protein compare
NIAGMN_07895 gmhB -2.9 -1.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
NIAGMN_22455 hisC -2.9 -3.5 histidinol-phosphate transaminase compare
NIAGMN_02535 tccP -2.9 -1.0 Tir-cytoskeleton coupling protein TccP compare
NIAGMN_26845 trpA -2.9 -1.0 tryptophan synthase subunit alpha compare
NIAGMN_12195 cyaY -2.9 -1.2 iron donor protein CyaY compare
NIAGMN_11065 purD -2.9 -10.1 Phosphoribosylamine--glycine ligase compare
NIAGMN_18990 tyrA -2.8 -9.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
NIAGMN_03900 ybjS -2.8 -1.7 Uncharacterized protein YbjS compare
NIAGMN_01415 yeaQ -2.8 -0.7 UPF0410 protein YeaQ compare
NIAGMN_23780 pgaD -2.8 -0.7 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
NIAGMN_23790 pgaB -2.8 -0.7 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB compare
NIAGMN_18140 cysJ -2.8 -12.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
NIAGMN_00770 fumD -2.8 -2.4 fumarate hydratase FumD compare
NIAGMN_01955 flhC -2.8 -1.4 flagellar transcriptional regulator FlhC compare
NIAGMN_04570 -2.7 -3.8 phage portal protein compare
NIAGMN_27870 fepC -2.7 -1.3 ABC transporter ATP-binding protein compare
NIAGMN_20605 -2.7 -0.6 hypothetical protein compare
NIAGMN_11430 metB -2.7 -10.5 cystathionine gamma-synthase compare
NIAGMN_08795 carA -2.7 -6.5 carbamoyl phosphate synthase small subunit compare
NIAGMN_23190 yccJ -2.7 -0.6 Uncharacterized protein YccJ compare
NIAGMN_27165 -2.7 -0.9 T3SS effector protein NleG8 compare
NIAGMN_11025 metA -2.7 -8.0 homoserine O-succinyltransferase compare
NIAGMN_06665 proC -2.7 -4.9 pyrroline-5-carboxylate reductase compare
NIAGMN_17560 -2.7 -0.6 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
NIAGMN_00610 sodC -2.7 -1.1 superoxide dismutase [Cu-Zn] SodC compare
NIAGMN_12085 metR -2.6 -8.7 HTH-type transcriptional regulator MetR compare
NIAGMN_04855 tolB -2.6 -4.2 Tol-Pal system protein TolB compare
NIAGMN_11925 dsbA -2.6 -1.0 thiol:disulfide interchange protein DsbA compare
NIAGMN_03015 pyrD -2.6 -3.1 quinone-dependent dihydroorotate dehydrogenase compare
NIAGMN_19970 cysK -2.6 -8.6 cysteine synthase A compare
NIAGMN_13455 rfaF -2.5 -1.2 ADP-heptose--LPS heptosyltransferase RfaF compare
NIAGMN_18220 cysC -2.5 -9.0 Adenylyl-sulfate kinase compare
NIAGMN_22385 -2.5 -2.6 GDP-mannose 4,6-dehydratase compare
NIAGMN_23785 pgaC -2.5 -1.8 poly-beta-1,6-N-acetyl-D-glucosamine synthase compare
NIAGMN_19240 purL -2.5 -11.0 phosphoribosylformylglycinamidine synthase compare
NIAGMN_17590 -2.5 -0.7 type III secretion system needle complex protein compare
NIAGMN_17715 lysA -2.5 -10.6 diaminopimelate decarboxylase compare
NIAGMN_22440 hisA -2.5 -1.2 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
NIAGMN_26540 -2.5 -1.4 ABC transporter substrate-binding protein compare
NIAGMN_17710 lysR -2.5 -7.2 DNA-binding transcriptional regulator LysR compare
NIAGMN_26835 trpCF -2.5 -3.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
NIAGMN_12400 ilvE -2.4 -11.0 branched-chain-amino-acid transaminase compare
NIAGMN_18150 cysH -2.4 -4.7 phosphoadenosine phosphosulfate reductase compare
NIAGMN_13360 pyrE -2.4 -6.7 Orotate phosphoribosyltransferase compare
NIAGMN_00475 hdhA -2.3 -1.4 7-alpha-hydroxysteroid dehydrogenase compare
NIAGMN_22220 dcd -2.3 -2.1 dCTP deaminase compare
NIAGMN_01840 cmoB -2.3 -1.6 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
NIAGMN_14950 cysG -2.3 -8.9 siroheme synthase CysG compare
NIAGMN_08965 thrL -2.3 -2.7 thr operon leader peptide compare
NIAGMN_23220 -2.2 -1.5 DUF551 domain-containing protein compare
NIAGMN_17830 argA -2.2 -8.4 amino-acid N-acetyltransferase compare
NIAGMN_03295 lrp -2.2 -5.0 leucine-responsive transcriptional regulator Lrp compare
NIAGMN_15850 argG -2.2 -6.0 argininosuccinate synthase compare
NIAGMN_24830 -2.2 -0.7 HK97 family phage prohead protease compare
NIAGMN_27645 galU -2.2 -2.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
NIAGMN_08960 thrA -2.2 -12.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
NIAGMN_18145 cysI -2.2 -6.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
NIAGMN_11330 -2.2 -6.7 acetylglutamate kinase compare
NIAGMN_12390 ilvA -2.2 -9.7 threonine ammonia-lyase, biosynthetic compare
NIAGMN_20485 purF -2.2 -6.2 amidophosphoribosyltransferase compare
NIAGMN_11345 ppc -2.2 -9.8 phosphoenolpyruvate carboxylase compare
NIAGMN_07535 proB -2.2 -4.8 Glutamate 5-kinase compare
NIAGMN_12600 glmU -2.2 -3.3 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU compare
NIAGMN_11335 argC -2.2 -6.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
NIAGMN_02235 yecF -2.2 -0.9 DUF2594 domain-containing protein compare
NIAGMN_22750 -2.1 -0.5 DUF1391 domain-containing protein compare
NIAGMN_17040 gshB -2.1 -3.6 glutathione synthase compare
NIAGMN_28535 ehxC -2.1 -1.5 enterohemolysin-activating lysine-acyltransferase EhxC compare
NIAGMN_02780 -2.1 -1.1 hypothetical protein compare
NIAGMN_20005 -2.1 -1.4 LysR-substrate domain-containing protein compare
NIAGMN_18750 -2.1 -0.7 hypothetical protein compare
NIAGMN_22910 -2.1 -0.7 lysis protein compare
NIAGMN_08680 pdxA -2.1 -5.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
NIAGMN_23710 rutC -2.1 -2.9 pyrimidine utilization protein C compare
NIAGMN_27730 chaC -2.0 -0.7 glutathione-specific gamma-glutamylcyclotransferase compare
NIAGMN_27925 dadX -2.0 -1.7 catabolic alanine racemase DadX compare
NIAGMN_22020 -2.0 -2.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
NIAGMN_08635 araA -2.0 -7.5 L-arabinose isomerase compare
NIAGMN_19150 rseA -1.9 -2.7 anti-sigma-E factor RseA compare
NIAGMN_01065 ydjO -1.9 -1.4 Uncharacterized protein YdjO compare
NIAGMN_04515 -1.9 -0.7 phage minor tail protein L compare
NIAGMN_19550 yfgG -1.9 -1.0 Uncharacterized protein YfgG compare
NIAGMN_27980 ycgM -1.9 -1.3 fumarylacetoacetate hydrolase family protein compare
NIAGMN_20610 nuoA -1.9 -2.5 NADH-quinone oxidoreductase subunit NuoA compare
NIAGMN_09615 Leu_trna -1.9 -1.1 tRNA-Leu(caa) compare
NIAGMN_20435 pdxB -1.9 -4.8 4-phosphoerythronate dehydrogenase PdxB compare
NIAGMN_00930 aroH -1.9 -1.8 3-deoxy-7-phosphoheptulonate synthase AroH compare
NIAGMN_14960 nirD -1.9 -1.7 nitrite reductase small subunit NirD compare
NIAGMN_01585 yebQ -1.8 -0.9 Uncharacterized transporter YebQ compare
NIAGMN_09685 argF -1.8 -6.5 ornithine carbamoyltransferase compare
NIAGMN_21035 napH -1.8 -2.1 quinol dehydrogenase ferredoxin subunit NapH compare
NIAGMN_05895 purK -1.8 -4.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
NIAGMN_18215 cysN -1.8 -5.3 sulfate adenylyltransferase subunit CysN compare
NIAGMN_24140 flgN -1.8 -1.1 flagella biosynthesis chaperone FlgN compare
NIAGMN_17370 yqfG -1.8 -1.7 Uncharacterized protein YqfG compare
NIAGMN_08625 araC -1.8 -4.0 arabinose operon transcriptional regulator AraC compare
NIAGMN_24100 pyrC -1.8 -1.7 dihydroorotase compare
NIAGMN_18210 cysD -1.8 -7.2 sulfate adenylyltransferase subunit CysD compare
NIAGMN_00385 pntA -1.8 -1.4 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
NIAGMN_18710 -1.8 -0.6 DUF5508 domain-containing protein compare
NIAGMN_03010 zapC -1.8 -1.4 cell division protein ZapC compare
NIAGMN_27560 tonB -1.8 -2.0 TonB system transport protein TonB compare
NIAGMN_26830 trpD -1.8 -2.0 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
NIAGMN_23665 -1.8 -1.5 DUF4752 domain-containing protein compare
NIAGMN_11495 hslU -1.8 -0.9 HslU--HslV peptidase ATPase subunit compare
NIAGMN_09500 -1.8 -1.2 Orf compare
NIAGMN_05635 fepB -1.7 -6.0 ferrienterobactin ABC transporter periplasmic binding protein compare
NIAGMN_23735 -1.7 -0.7 hypothetical protein compare
NIAGMN_24435 ydaS -1.7 -0.7 transcriptional regulator compare
NIAGMN_19785 eutP -1.7 -1.6 ethanolamine utilization acetate kinase EutP compare
NIAGMN_17015 yggT -1.7 -1.4 osmotic shock tolerance protein YggT compare
NIAGMN_28120 -1.7 -0.6 tail assembly protein compare
NIAGMN_01710 purT -1.7 -2.1 formate-dependent phosphoribosylglycinamide formyltransferase compare
NIAGMN_04130 gsiD -1.7 -1.4 glutathione ABC transporter permease GsiD compare
NIAGMN_17490 Gly_trna -1.7 -0.6 tRNA-Gly(ccc) compare
NIAGMN_22790 -1.7 -2.2 Eae-like protein compare
NIAGMN_23205 -1.7 -1.7 DNA-binding protein compare
NIAGMN_20630 nuoF -1.7 -3.3 NADH-quinone oxidoreductase subunit NuoF compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC102 in carbon source experiments

For carbon source L-Arabinose across organisms