Experiment set2S11 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Cytosine 0.9 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS13805 -2.0 -2.3 HAD family hydrolase compare
A4249_RS10815 -1.8 -4.0 Do family serine endopeptidase compare
A4249_RS09035 -1.5 -2.2 redox-regulated ATPase YchF compare
A4249_RS01230 -1.4 -2.6 hypothetical protein compare
A4249_RS10295 -1.3 -1.7 hypothetical protein compare
A4249_RS06665 -1.2 -2.2 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS02325 -0.9 -1.4 23S ribosomal RNA compare
A4249_RS10965 -0.9 -1.2 response regulator compare
A4249_RS01460 -0.9 -1.6 signal peptide peptidase SppA compare
A4249_RS08495 -0.9 -1.4 Na+/H+ antiporter subunit E compare
A4249_RS13560 -0.9 -2.4 glutaredoxin 3 compare
A4249_RS16585 -0.9 -2.9 hypothetical protein compare
A4249_RS00895 -0.9 -2.0 DUF1476 domain-containing protein compare
A4249_RS11125 -0.8 -5.8 glycosyltransferase family 9 protein compare
A4249_RS17075 -0.8 -1.4 energy transducer TonB compare
A4249_RS06465 -0.8 -1.9 hypothetical protein compare
A4249_RS07610 -0.8 -1.4 methyltransferase type 11 compare
A4249_RS07020 -0.8 -1.8 hypothetical protein compare
A4249_RS06230 -0.8 -1.3 OmpH family outer membrane protein compare
A4249_RS11560 -0.7 -1.3 peroxiredoxin compare
A4249_RS01590 -0.7 -1.4 site-specific DNA-methyltransferase compare
A4249_RS06525 -0.7 -0.9 SCP2 sterol-binding domain-containing protein compare
A4249_RS15110 -0.7 -2.3 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS12970 -0.7 -2.8 glycosyltransferase family 61 protein compare
A4249_RS01905 -0.7 -1.0 TrbC/VirB2 family protein compare
A4249_RS00720 -0.7 -1.4 DUF1294 domain-containing protein compare
A4249_RS01965 -0.6 -2.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
A4249_RS10990 -0.6 -1.6 ATP-dependent protease ATPase subunit HslU compare
A4249_RS12400 -0.6 -0.9 hypothetical protein compare
A4249_RS11805 -0.6 -1.1 SOS response-associated peptidase compare
A4249_RS05620 -0.6 -3.6 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS06780 -0.6 -1.2 YicC family protein compare
A4249_RS13025 -0.6 -5.0 hypothetical protein compare
A4249_RS15470 -0.6 -1.9 cold-shock protein compare
A4249_RS02820 -0.6 -1.6 Ppx/GppA phosphatase family protein compare
A4249_RS09620 -0.6 -1.6 flagellar basal-body rod protein FlgF compare
A4249_RS03820 -0.6 -2.5 DUF1489 domain-containing protein compare
A4249_RS08775 -0.6 -1.3 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
A4249_RS16085 -0.6 -1.0 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS07995 -0.6 -1.0 type II 3-dehydroquinate dehydratase compare
A4249_RS05625 -0.6 -4.4 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS04020 -0.6 -1.6 energy transducer TonB compare
A4249_RS07145 -0.6 -1.7 hypothetical protein compare
A4249_RS10430 -0.5 -3.3 S1/P1 Nuclease compare
A4249_RS13175 -0.5 -1.0 Rrf2 family transcriptional regulator compare
A4249_RS01610 -0.5 -0.9 TetR/AcrR family transcriptional regulator compare
A4249_RS00265 -0.5 -1.9 peroxiredoxin compare
A4249_RS07195 -0.5 -1.8 hypothetical protein compare
A4249_RS08270 -0.5 -1.7 DedA family protein compare
A4249_RS08300 -0.5 -1.3 cold-shock protein compare
A4249_RS01085 -0.5 -0.9 DUF2282 domain-containing protein compare
A4249_RS13020 -0.5 -3.0 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS12980 -0.5 -4.5 GDP-mannose 4,6-dehydratase compare
A4249_RS11285 -0.5 -1.6 double-strand break repair protein AddB compare
A4249_RS05900 -0.5 -1.1 hypothetical protein compare
A4249_RS14205 -0.4 -0.8 response regulator compare
A4249_RS06325 -0.4 -1.8 ribonuclease J compare
A4249_RS07105 -0.4 -1.3 hypothetical protein compare
A4249_RS13030 -0.4 -3.4 glycosyltransferase family 1 protein compare
A4249_RS15360 -0.4 -0.8 DNA replication/repair protein RecF compare
A4249_RS09285 -0.4 -1.6 Tat pathway signal sequence domain protein compare
A4249_RS16150 -0.4 -0.9 hypothetical protein compare
A4249_RS12260 -0.4 -1.1 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS13070 -0.4 -3.2 phosphomannomutase/phosphoglucomutase compare
A4249_RS07090 -0.4 -1.2 hypothetical protein compare
A4249_RS13060 -0.4 -3.4 AGE family epimerase/isomerase compare
A4249_RS15455 -0.4 -0.8 Rieske (2Fe-2S) protein compare
A4249_RS04450 -0.4 -1.2 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS14565 -0.4 -1.7 DUF488 domain-containing protein compare
A4249_RS16615 -0.4 -1.3 hypothetical protein compare
A4249_RS13045 -0.4 -3.5 glycosyltransferase family 1 protein compare
A4249_RS08550 -0.4 -1.1 flagellar basal-body protein FlbY compare
A4249_RS15345 -0.4 -1.8 DUF6491 family protein compare
A4249_RS00260 -0.4 -0.8 YqgE/AlgH family protein compare
A4249_RS13535 -0.4 -1.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS14155 -0.4 -2.0 thioredoxin compare
A4249_RS09075 -0.4 -0.7 hypothetical protein compare
A4249_RS12330 -0.4 -1.4 hypothetical protein compare
A4249_RS14230 -0.4 -1.3 hypothetical protein compare
A4249_RS05285 -0.4 -1.8 hypothetical protein compare
A4249_RS00240 -0.4 -1.2 rhodanese family protein compare
A4249_RS11100 -0.4 -1.9 response regulator compare
A4249_RS15140 -0.4 -1.5 TraB/GumN family protein compare
A4249_RS14680 -0.3 -1.2 PAS domain-containing sensor histidine kinase compare
A4249_RS04080 -0.3 -1.5 M48 family metalloprotease compare
A4249_RS08685 -0.3 -1.5 hypothetical protein compare
A4249_RS04635 -0.3 -3.0 cyclic nucleotide-binding domain-containing protein compare
A4249_RS11180 -0.3 -1.5 YqaA family protein compare
A4249_RS13400 -0.3 -1.2 DUF2939 domain-containing protein compare
A4249_RS04565 -0.3 -1.2 Rrf2 family transcriptional regulator compare
A4249_RS01415 -0.3 -0.6 phage Gp37/Gp68 family protein compare
A4249_RS04200 -0.3 -1.5 pseudouridine synthase compare
A4249_RS07165 -0.3 -2.8 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS08885 -0.3 -0.9 DUF465 domain-containing protein compare
A4249_RS01675 -0.3 -1.1 DMT family transporter compare
A4249_RS01120 -0.3 -1.0 uracil-DNA glycosylase compare
A4249_RS07030 -0.3 -1.4 hypothetical protein compare
A4249_RS03040 -0.3 -1.4 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase compare
A4249_RS08535 -0.3 -0.7 flagellar assembly protein FliX compare
A4249_RS01010 -0.3 -2.1 capsular polysaccharide biosynthesis protein compare
A4249_RS10735 -0.3 -1.0 phosphogluconate dehydratase compare
A4249_RS02650 -0.3 -0.6 hypothetical protein compare
A4249_RS14905 -0.3 -0.8 phosphonate ABC transporter ATP-binding protein compare
A4249_RS15605 -0.3 -1.6 hypothetical protein compare
A4249_RS12915 -0.3 -1.2 hypothetical protein compare
A4249_RS14970 -0.3 -1.5 phasin compare
A4249_RS06180 -0.3 -1.1 transcriptional repressor LexA compare
A4249_RS14985 -0.3 -1.2 DHA2 family efflux MFS transporter permease subunit compare
A4249_RS03115 -0.3 -0.7 signal peptidase II compare
A4249_RS12140 -0.3 -1.1 ATP-binding protein compare
A4249_RS08730 -0.3 -2.2 hypothetical protein compare
A4249_RS02740 -0.3 -1.8 flagellin compare
A4249_RS02250 -0.3 -2.1 M23 family metallopeptidase compare
A4249_RS07205 -0.3 -2.1 hypothetical protein compare
A4249_RS11930 -0.3 -1.0 YcxB family protein compare
A4249_RS15595 -0.3 -1.0 hypothetical protein compare
A4249_RS16540 -0.3 -1.6 hypothetical protein compare
A4249_RS14895 -0.3 -1.0 phosphonate ABC transporter, permease protein PhnE compare
A4249_RS10360 -0.3 -0.7 HAMP domain-containing sensor histidine kinase compare
A4249_RS10915 -0.3 -0.8 hypothetical protein compare
A4249_RS00015 -0.3 -1.7 CsbD family protein compare
A4249_RS16570 -0.3 -1.6 hypothetical protein compare
A4249_RS15555 -0.3 -1.7 STAS domain-containing protein compare
A4249_RS10750 -0.3 -1.2 hypothetical protein compare
A4249_RS08725 -0.3 -1.4 hypothetical protein compare
A4249_RS09415 -0.3 -1.5 deoxyguanosinetriphosphate triphosphohydrolase compare
A4249_RS11150 -0.3 -1.8 capsular biosynthesis protein compare
A4249_RS09725 -0.3 -0.9 hypothetical protein compare
A4249_RS09195 -0.3 -1.4 TldD/PmbA family protein compare
A4249_RS05220 -0.3 -1.5 hypothetical protein compare
A4249_RS13620 -0.3 -2.0 dienelactone hydrolase family protein compare
A4249_RS09265 -0.3 -0.6 exodeoxyribonuclease VII large subunit compare
A4249_RS11995 -0.3 -2.0 type II secretion system F family protein compare
A4249_RS06855 -0.3 -1.3 hypothetical protein compare
A4249_RS08705 -0.3 -1.4 response regulator compare
A4249_RS10085 -0.3 -1.5 DnaJ C-terminal domain-containing protein compare
A4249_RS13590 -0.3 -1.4 [protein-PII] uridylyltransferase compare
A4249_RS10460 -0.3 -2.3 ATP-binding protein compare
A4249_RS05800 -0.3 -1.0 MerC domain-containing protein compare
A4249_RS04690 -0.3 -2.0 hemerythrin domain-containing protein compare
A4249_RS13745 -0.3 -1.7 DUF3576 domain-containing protein compare
A4249_RS11665 -0.3 -1.6 NAD(P)/FAD-dependent oxidoreductase compare
A4249_RS11835 -0.3 -1.8 hypothetical protein compare
A4249_RS09735 -0.3 -1.4 NUDIX domain-containing protein compare
A4249_RS01970 -0.3 -1.8 2-dehydro-3-deoxygalactonokinase compare
A4249_RS03590 -0.3 -2.3 enoyl-CoA hydratase/isomerase family protein compare
A4249_RS01555 -0.3 -0.8 response regulator compare
A4249_RS00755 -0.3 -0.9 YbdD/YjiX family protein compare
A4249_RS07140 -0.3 -1.8 hypothetical protein compare
A4249_RS16325 -0.2 -1.0 helix-turn-helix transcriptional regulator compare
A4249_RS02345 -0.2 -1.4 alpha/beta hydrolase compare
A4249_RS02395 -0.2 -1.1 FecR domain-containing protein compare
A4249_RS04390 -0.2 -1.5 ABC transporter ATP-binding protein compare
A4249_RS06990 -0.2 -1.4 MT-A70 family methyltransferase compare
A4249_RS06125 -0.2 -1.2 hypothetical protein compare
A4249_RS00505 -0.2 -0.9 GNAT family N-acetyltransferase compare
A4249_RS15090 -0.2 -1.4 NAD(+) diphosphatase compare
A4249_RS03570 -0.2 -0.9 TonB family protein compare
A4249_RS01715 -0.2 -1.0 GNAT family N-acetyltransferase compare
A4249_RS07395 -0.2 -0.7 hypothetical protein compare
A4249_RS13125 -0.2 -0.8 ribonuclease PH compare
A4249_RS03645 -0.2 -1.3 TonB-dependent receptor compare
A4249_RS06165 -0.2 -1.2 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS07400 -0.2 -1.6 hypothetical protein compare
A4249_RS14780 -0.2 -1.4 NepR family anti-sigma factor compare
A4249_RS00395 -0.2 -0.8 DUF2975 domain-containing protein compare
A4249_RS01145 -0.2 -1.3 OsmC family protein compare
A4249_RS07420 -0.2 -1.6 hypothetical protein compare
A4249_RS14900 -0.2 -1.4 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS00880 -0.2 -1.4 YbhB/YbcL family Raf kinase inhibitor-like protein compare
A4249_RS03170 -0.2 -0.4 hypothetical protein compare
A4249_RS10205 -0.2 -1.4 SMR family transporter compare
A4249_RS04215 -0.2 -0.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS13480 -0.2 -1.3 protein-export chaperone SecB compare
A4249_RS09595 -0.2 -1.1 DUF3297 family protein compare
A4249_RS16520 -0.2 -1.1 hypothetical protein compare
A4249_RS11245 -0.2 -1.4 AsmA family protein compare
A4249_RS04875 -0.2 -1.6 4,5-DOPA dioxygenase extradiol compare
A4249_RS03065 -0.2 -0.8 arsenate reductase (glutaredoxin) compare
A4249_RS02430 -0.2 -1.6 DUF808 domain-containing protein compare
A4249_RS09840 -0.2 -1.1 pyrroline-5-carboxylate reductase dimerization domain-containing protein compare
A4249_RS12015 -0.2 -1.8 CpaD family pilus assembly protein compare
A4249_RS16465 -0.2 -1.3 hypothetical protein compare
A4249_RS03745 -0.2 -1.6 DNA repair protein RadA compare
A4249_RS02085 -0.2 -1.7 pectate lyase compare
A4249_RS02540 -0.2 -1.6 LysR family transcriptional regulator compare
A4249_RS09565 -0.2 -1.1 hypothetical protein compare
A4249_RS06950 -0.2 -0.9 hypothetical protein compare
A4249_RS07220 -0.2 -1.1 HAD-IA family hydrolase compare
A4249_RS10630 -0.2 -1.1 FAD:protein FMN transferase compare
A4249_RS02220 -0.2 -0.7 MaoC family dehydratase compare
A4249_RS04945 -0.2 -1.0 glutathione peroxidase compare
A4249_RS06370 -0.2 -0.5 hypothetical protein compare
A4249_RS15850 -0.2 -1.1 MgtC/SapB family protein compare
A4249_RS08285 -0.2 -0.6 preQ(1) synthase compare
A4249_RS09015 -0.2 -0.8 hypothetical protein compare
A4249_RS00830 -0.2 -1.3 hypothetical protein compare
A4249_RS11900 -0.2 -1.8 hypothetical protein compare
A4249_RS13010 -0.2 -1.2 FkbM family methyltransferase compare
A4249_RS04210 -0.2 -1.1 TMEM175 family protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Cytosine across organisms