Experiment set2S10 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Cytosine 0.9 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS01590 -1.4 -2.4 site-specific DNA-methyltransferase compare
A4249_RS08535 -1.1 -1.8 flagellar assembly protein FliX compare
A4249_RS13805 -1.0 -1.4 HAD family hydrolase compare
A4249_RS05620 -1.0 -5.7 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS04475 -0.9 -2.0 response regulator transcription factor compare
A4249_RS06665 -0.8 -1.7 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS09075 -0.8 -1.5 hypothetical protein compare
A4249_RS15560 -0.8 -1.5 response regulator compare
A4249_RS11125 -0.8 -6.9 glycosyltransferase family 9 protein compare
A4249_RS01610 -0.8 -0.9 TetR/AcrR family transcriptional regulator compare
A4249_RS13025 -0.8 -6.2 hypothetical protein compare
A4249_RS12280 -0.7 -2.5 esterase-like activity of phytase family protein compare
A4249_RS01325 -0.7 -1.8 hypothetical protein compare
A4249_RS13030 -0.7 -5.1 glycosyltransferase family 1 protein compare
A4249_RS12085 -0.7 -1.8 DUF883 family protein compare
A4249_RS01355 -0.7 -1.6 hypothetical protein compare
A4249_RS12970 -0.7 -3.2 glycosyltransferase family 61 protein compare
A4249_RS13200 -0.7 -1.7 thiamine pyrophosphate-dependent enzyme compare
A4249_RS12305 -0.7 -2.7 glycosyltransferase family 1 protein compare
A4249_RS04620 -0.6 -1.8 hypothetical protein compare
A4249_RS10965 -0.6 -1.0 response regulator compare
A4249_RS01190 -0.6 -1.5 hypothetical protein compare
A4249_RS05625 -0.6 -5.1 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS13060 -0.6 -5.0 AGE family epimerase/isomerase compare
A4249_RS08510 -0.6 -2.2 hypothetical protein compare
A4249_RS12980 -0.6 -5.5 GDP-mannose 4,6-dehydratase compare
A4249_RS13125 -0.6 -2.2 ribonuclease PH compare
A4249_RS13070 -0.6 -4.6 phosphomannomutase/phosphoglucomutase compare
A4249_RS02325 -0.6 -1.0 23S ribosomal RNA compare
A4249_RS12640 -0.6 -1.3 hypothetical protein compare
A4249_RS10430 -0.6 -3.5 S1/P1 Nuclease compare
A4249_RS08550 -0.6 -1.8 flagellar basal-body protein FlbY compare
A4249_RS07910 -0.6 -1.1 2-hydroxyacid dehydrogenase compare
A4249_RS06525 -0.6 -0.9 SCP2 sterol-binding domain-containing protein compare
A4249_RS13045 -0.6 -4.5 glycosyltransferase family 1 protein compare
A4249_RS04080 -0.6 -2.3 M48 family metalloprotease compare
A4249_RS13560 -0.5 -1.7 glutaredoxin 3 compare
A4249_RS10105 -0.5 -0.8 DUF2460 domain-containing protein compare
A4249_RS08025 -0.5 -1.2 DUF2155 domain-containing protein compare
A4249_RS16585 -0.5 -1.0 hypothetical protein compare
A4249_RS13495 -0.5 -1.7 organic hydroperoxide resistance protein compare
A4249_RS13020 -0.5 -3.4 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS14835 -0.5 -2.9 S41 family peptidase compare
A4249_RS13190 -0.5 -1.9 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS11285 -0.5 -1.7 double-strand break repair protein AddB compare
A4249_RS05595 -0.5 -1.6 dicarboxylate/amino acid:cation symporter compare
A4249_RS11150 -0.5 -2.8 capsular biosynthesis protein compare
A4249_RS07610 -0.5 -1.0 methyltransferase type 11 compare
A4249_RS09255 -0.5 -0.4 phosphoribosylamine--glycine ligase compare
A4249_RS11290 -0.5 -1.4 double-strand break repair helicase AddA compare
A4249_RS12210 -0.5 -1.3 tyrosine recombinase XerC compare
A4249_RS14395 -0.5 -1.7 hypothetical protein compare
A4249_RS07405 -0.5 -1.5 hypothetical protein compare
A4249_RS01010 -0.4 -3.0 capsular polysaccharide biosynthesis protein compare
A4249_RS06485 -0.4 -1.8 hypothetical protein compare
A4249_RS01290 -0.4 -3.1 S49 family peptidase compare
A4249_RS13850 -0.4 -1.6 twin transmembrane helix small protein compare
A4249_RS08865 -0.4 -1.4 DUF1192 domain-containing protein compare
A4249_RS14545 -0.4 -1.5 metallophosphoesterase compare
A4249_RS01220 -0.4 -1.8 hypothetical protein compare
A4249_RS12330 -0.4 -1.4 hypothetical protein compare
A4249_RS14165 -0.4 -1.8 prolyl-tRNA synthetase associated domain-containing protein compare
A4249_RS12830 -0.4 -0.9 YkvA family protein compare
A4249_RS01075 -0.4 -1.9 DNA-binding domain-containing protein compare
A4249_RS00100 -0.4 -1.2 PadR family transcriptional regulator compare
A4249_RS02395 -0.4 -1.8 FecR domain-containing protein compare
A4249_RS12455 -0.4 -1.1 hypothetical protein compare
A4249_RS15865 -0.4 -0.7 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS01615 -0.4 -1.4 GNAT family N-acetyltransferase compare
A4249_RS04125 -0.4 -0.8 mechanosensitive ion channel family protein compare
A4249_RS07190 -0.4 -1.9 hypothetical protein compare
A4249_RS06680 -0.4 -1.1 tipN compare
A4249_RS10115 -0.4 -0.9 phage tail tape measure protein compare
A4249_RS14905 -0.4 -1.1 phosphonate ABC transporter ATP-binding protein compare
A4249_RS14625 -0.4 -1.1 hypothetical protein compare
A4249_RS01555 -0.4 -1.0 response regulator compare
A4249_RS07895 -0.4 -1.1 VOC family protein compare
A4249_RS05745 -0.4 -1.9 ImmA/IrrE family metallo-endopeptidase compare
A4249_RS02650 -0.4 -1.0 hypothetical protein compare
A4249_RS14780 -0.4 -1.8 NepR family anti-sigma factor compare
A4249_RS12635 -0.4 -1.9 phosphatase PAP2 family protein compare
A4249_RS01905 -0.4 -0.5 TrbC/VirB2 family protein compare
A4249_RS01460 -0.4 -0.7 signal peptide peptidase SppA compare
A4249_RS07335 -0.4 -1.4 peptide-methionine (R)-S-oxide reductase MsrB compare
A4249_RS13035 -0.4 -2.0 hypothetical protein compare
A4249_RS14695 -0.4 -1.7 transcription elongation factor GreA compare
A4249_RS14825 -0.4 -2.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS14105 -0.4 -1.3 hypothetical protein compare
A4249_RS16695 -0.3 -1.1 potassium-transporting ATPase subunit F compare
A4249_RS00895 -0.3 -1.0 DUF1476 domain-containing protein compare
A4249_RS08705 -0.3 -1.7 response regulator compare
A4249_RS15595 -0.3 -1.1 hypothetical protein compare
A4249_RS10990 -0.3 -0.8 ATP-dependent protease ATPase subunit HslU compare
A4249_RS04450 -0.3 -1.1 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS00720 -0.3 -0.8 DUF1294 domain-containing protein compare
A4249_RS02765 -0.3 -0.8 hypothetical protein compare
A4249_RS15140 -0.3 -1.3 TraB/GumN family protein compare
A4249_RS10815 -0.3 -1.1 Do family serine endopeptidase compare
A4249_RS03370 -0.3 -0.5 copper-binding protein compare
A4249_RS07020 -0.3 -0.8 hypothetical protein compare
A4249_RS10295 -0.3 -0.7 hypothetical protein compare
A4249_RS07645 -0.3 -1.2 fumarylacetoacetate hydrolase family protein compare
A4249_RS04635 -0.3 -3.1 cyclic nucleotide-binding domain-containing protein compare
A4249_RS11720 -0.3 -0.7 strawberry notch C-terminal domain-containing protein compare
A4249_RS01285 -0.3 -1.3 head decoration protein compare
A4249_RS04790 -0.3 -1.0 sulfurtransferase TusA family protein compare
A4249_RS02780 -0.3 -1.7 DMT family transporter compare
A4249_RS16845 -0.3 -1.5 hypothetical protein compare
A4249_RS02735 -0.3 -1.7 flagellin compare
A4249_RS07940 -0.3 -1.6 hypothetical protein compare
A4249_RS15485 -0.3 -1.5 biliverdin-producing heme oxygenase compare
A4249_RS15755 -0.3 -1.7 amino acid racemase compare
A4249_RS02620 -0.3 -2.0 DNA repair protein RecN compare
A4249_RS08725 -0.3 -1.7 hypothetical protein compare
A4249_RS12825 -0.3 -0.9 SDR family oxidoreductase compare
A4249_RS03590 -0.3 -2.8 enoyl-CoA hydratase/isomerase family protein compare
A4249_RS09275 -0.3 -1.2 DUF3035 domain-containing protein compare
A4249_RS15345 -0.3 -1.5 DUF6491 family protein compare
A4249_RS14445 -0.3 -1.0 hypothetical protein compare
A4249_RS14715 -0.3 -2.1 PhoH family protein compare
A4249_RS14830 -0.3 -0.9 peptidoglycan DD-metalloendopeptidase family protein compare
A4249_RS11425 -0.3 -0.9 ATP-binding cassette domain-containing protein compare
A4249_RS13010 -0.3 -2.0 FkbM family methyltransferase compare
A4249_RS12000 -0.3 -2.3 type II secretion system F family protein compare
A4249_RS05000 -0.3 -1.7 YccF domain-containing protein compare
A4249_RS04995 -0.3 -1.1 DUF2171 domain-containing protein compare
A4249_RS11825 -0.3 -0.6 DUF6521 family protein compare
A4249_RS16630 -0.3 -0.9 DUF2474 family protein compare
A4249_RS06655 -0.3 -1.7 TPM domain-containing protein compare
A4249_RS03440 -0.3 -1.0 hypothetical protein compare
A4249_RS10975 -0.3 -1.8 DUF599 family protein compare
A4249_RS06165 -0.3 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS12090 -0.3 -1.7 fumarylacetoacetate hydrolase family protein compare
A4249_RS07995 -0.3 -0.7 type II 3-dehydroquinate dehydratase compare
A4249_RS10200 -0.3 -1.5 YcgN family cysteine cluster protein compare
A4249_RS02820 -0.3 -0.9 Ppx/GppA phosphatase family protein compare
A4249_RS07165 -0.3 -2.6 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS08730 -0.3 -2.3 hypothetical protein compare
A4249_RS07480 -0.3 -1.8 hypothetical protein compare
A4249_RS00360 -0.3 -1.2 type II toxin-antitoxin system prevent-host-death family antitoxin compare
A4249_RS10460 -0.3 -2.5 ATP-binding protein compare
A4249_RS08805 -0.3 -2.1 HAMP domain-containing sensor histidine kinase compare
A4249_RS16825 -0.3 -1.8 helix-turn-helix transcriptional regulator compare
A4249_RS02645 -0.3 -0.6 cobalamin biosynthesis protein CbiG compare
A4249_RS07200 -0.3 -1.2 hypothetical protein compare
A4249_RS08885 -0.3 -0.9 DUF465 domain-containing protein compare
A4249_RS01405 -0.3 -1.4 hypothetical protein compare
A4249_RS08855 -0.3 -0.9 L,D-transpeptidase family protein compare
A4249_RS13450 -0.3 -1.0 PilZ domain-containing protein compare
A4249_RS08545 -0.3 -1.8 rod-binding protein compare
A4249_RS09640 -0.3 -1.4 hypothetical protein compare
A4249_RS12615 -0.3 -1.0 recombinase RecA compare
A4249_RS13400 -0.3 -0.9 DUF2939 domain-containing protein compare
A4249_RS14135 -0.3 -0.5 ATP-binding protein compare
A4249_RS04390 -0.3 -1.4 ABC transporter ATP-binding protein compare
A4249_RS08270 -0.3 -1.0 DedA family protein compare
A4249_RS06395 -0.3 -1.8 hypothetical protein compare
A4249_RS10035 -0.3 -1.6 hypothetical protein compare
A4249_RS14470 -0.3 -1.5 PEGA domain-containing protein compare
A4249_RS00270 -0.3 -0.6 very short patch repair endonuclease compare
A4249_RS04445 -0.3 -1.5 ubiquinol oxidase subunit II compare
A4249_RS15605 -0.3 -1.3 hypothetical protein compare
A4249_RS01710 -0.3 -1.6 hypothetical protein compare
A4249_RS05355 -0.3 -1.6 alpha/beta fold hydrolase compare
A4249_RS16650 -0.3 -1.8 hypothetical protein compare
A4249_RS10480 -0.3 -0.6 DUF1190 domain-containing protein compare
A4249_RS11230 -0.3 -1.4 DUF1453 family protein compare
A4249_RS15195 -0.3 -1.5 DcaP family trimeric outer membrane transporter compare
A4249_RS10790 -0.3 -1.4 RNA polymerase sigma factor compare
A4249_RS12650 -0.3 -1.6 LLM class flavin-dependent oxidoreductase compare
A4249_RS13745 -0.2 -1.7 DUF3576 domain-containing protein compare
A4249_RS06780 -0.2 -0.6 YicC family protein compare
A4249_RS10060 -0.2 -1.5 RluA family pseudouridine synthase compare
A4249_RS10750 -0.2 -1.4 hypothetical protein compare
A4249_RS15660 -0.2 -0.8 hypothetical protein compare
A4249_RS14025 -0.2 -0.5 CHAP domain-containing protein compare
A4249_RS07090 -0.2 -1.3 hypothetical protein compare
A4249_RS02825 -0.2 -1.2 heat shock protein HspQ compare
A4249_RS15180 -0.2 -1.4 hypothetical protein compare
A4249_RS07155 -0.2 -2.2 hypothetical protein compare
A4249_RS09795 -0.2 -1.9 uracil-DNA glycosylase family protein compare
A4249_RS00855 -0.2 -1.0 hypothetical protein compare
A4249_RS14565 -0.2 -1.0 DUF488 domain-containing protein compare
A4249_RS16130 -0.2 -1.7 ZIP family metal transporter compare
A4249_RS01785 -0.2 -1.7 DUF5681 domain-containing protein compare
A4249_RS00710 -0.2 -1.3 hypothetical protein compare
A4249_RS01990 -0.2 -1.8 dihydroxy-acid dehydratase family protein compare
A4249_RS10070 -0.2 -1.7 response regulator compare
A4249_RS04755 -0.2 -1.3 TatD family hydrolase compare
A4249_RS03570 -0.2 -0.8 TonB family protein compare
A4249_RS12375 -0.2 -1.1 hypothetical protein compare
A4249_RS07470 -0.2 -0.4 hypothetical protein compare
A4249_RS04725 -0.2 -1.7 acyl-CoA dehydrogenase compare
A4249_RS10660 -0.2 -1.5 peptidase compare
A4249_RS01315 -0.2 -1.0 hypothetical protein compare
A4249_RS01110 -0.2 -1.6 DUF305 domain-containing protein compare
A4249_RS05695 -0.2 -1.8 zinc-binding dehydrogenase compare
A4249_RS14875 -0.2 -0.7 benzoate/H(+) symporter BenE family transporter compare
A4249_RS05750 -0.2 -1.5 helix-turn-helix transcriptional regulator compare
A4249_RS08685 -0.2 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Cytosine across organisms