Experiment set2S1 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Adenine 0.74 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS02325 -2.2 -2.6 23S ribosomal RNA compare
A4249_RS08855 -1.8 -3.4 L,D-transpeptidase family protein compare
A4249_RS10095 -1.8 -1.8 NlpC/P60 family protein compare
A4249_RS08510 -1.8 -3.9 hypothetical protein compare
A4249_RS01590 -1.7 -2.4 site-specific DNA-methyltransferase compare
A4249_RS12970 -1.6 -5.6 glycosyltransferase family 61 protein compare
A4249_RS10430 -1.6 -7.6 S1/P1 Nuclease compare
A4249_RS05620 -1.5 -6.3 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS04080 -1.4 -4.4 M48 family metalloprotease compare
A4249_RS06230 -1.4 -2.3 OmpH family outer membrane protein compare
A4249_RS11125 -1.4 -8.7 glycosyltransferase family 9 protein compare
A4249_RS16085 -1.3 -2.0 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS10360 -1.2 -1.9 HAMP domain-containing sensor histidine kinase compare
A4249_RS04125 -1.2 -2.3 mechanosensitive ion channel family protein compare
A4249_RS12085 -1.1 -2.4 DUF883 family protein compare
A4249_RS08300 -1.1 -1.6 cold-shock protein compare
A4249_RS08535 -1.1 -2.0 flagellar assembly protein FliX compare
A4249_RS12305 -1.0 -3.2 glycosyltransferase family 1 protein compare
A4249_RS00105 -1.0 -6.4 cytochrome c oxidase subunit II compare
A4249_RS00110 -1.0 -8.0 cytochrome c oxidase subunit I compare
A4249_RS11285 -1.0 -2.8 double-strand break repair protein AddB compare
A4249_RS00290 -1.0 -1.8 histidine phosphatase family protein compare
A4249_RS07105 -1.0 -1.3 hypothetical protein compare
A4249_RS06665 -1.0 -1.7 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS06780 -0.9 -1.7 YicC family protein compare
A4249_RS02645 -0.9 -1.2 cobalamin biosynthesis protein CbiG compare
A4249_RS16585 -0.9 -1.4 hypothetical protein compare
A4249_RS04635 -0.9 -7.6 cyclic nucleotide-binding domain-containing protein compare
A4249_RS10815 -0.9 -2.3 Do family serine endopeptidase compare
A4249_RS09275 -0.9 -3.7 DUF3035 domain-containing protein compare
A4249_RS05625 -0.9 -6.6 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS13060 -0.8 -6.7 AGE family epimerase/isomerase compare
A4249_RS07290 -0.8 -2.0 ribonuclease E/G compare
A4249_RS14025 -0.8 -1.8 CHAP domain-containing protein compare
A4249_RS13200 -0.8 -1.9 thiamine pyrophosphate-dependent enzyme compare
A4249_RS07665 -0.8 -1.2 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS11805 -0.8 -1.2 SOS response-associated peptidase compare
A4249_RS11225 -0.8 -2.2 fumarylacetoacetate hydrolase family protein compare
A4249_RS10965 -0.8 -1.1 response regulator compare
A4249_RS12980 -0.8 -7.0 GDP-mannose 4,6-dehydratase compare
A4249_RS13025 -0.8 -5.7 hypothetical protein compare
A4249_RS13020 -0.8 -4.3 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS13070 -0.7 -5.5 phosphomannomutase/phosphoglucomutase compare
A4249_RS10105 -0.7 -0.8 DUF2460 domain-containing protein compare
A4249_RS06370 -0.7 -1.3 hypothetical protein compare
A4249_RS13030 -0.7 -4.7 glycosyltransferase family 1 protein compare
A4249_RS14625 -0.6 -1.9 hypothetical protein compare
A4249_RS12795 -0.6 -1.2 DsbE family thiol:disulfide interchange protein compare
A4249_RS13035 -0.6 -3.2 hypothetical protein compare
A4249_RS15875 -0.6 -2.3 hypothetical protein compare
A4249_RS05595 -0.6 -1.8 dicarboxylate/amino acid:cation symporter compare
A4249_RS02565 -0.6 -4.5 cytochrome b N-terminal domain-containing protein compare
A4249_RS11825 -0.6 -1.1 DUF6521 family protein compare
A4249_RS11150 -0.6 -3.5 capsular biosynthesis protein compare
A4249_RS12860 -0.6 -0.9 DUF350 domain-containing protein compare
A4249_RS00170 -0.6 -0.8 TetR/AcrR family transcriptional regulator compare
A4249_RS01355 -0.6 -1.2 hypothetical protein compare
A4249_RS04475 -0.6 -1.2 response regulator transcription factor compare
A4249_RS06435 -0.6 -1.3 tRNA-Asp compare
A4249_RS03190 -0.6 -1.7 ATPase, T2SS/T4P/T4SS family compare
A4249_RS13760 -0.6 -1.2 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS01010 -0.5 -3.3 capsular polysaccharide biosynthesis protein compare
A4249_RS13045 -0.5 -4.2 glycosyltransferase family 1 protein compare
A4249_RS08255 -0.5 -1.5 serine O-acetyltransferase compare
A4249_RS01265 -0.5 -2.6 hypothetical protein compare
A4249_RS09550 -0.5 -3.0 AMP-binding protein compare
A4249_RS07610 -0.5 -0.9 methyltransferase type 11 compare
A4249_RS14950 -0.5 -1.0 ParD-like family protein compare
A4249_RS14255 -0.5 -0.8 ribonuclease P protein component compare
A4249_RS08500 -0.5 -1.4 K+/H+ antiporter subunit F compare
A4249_RS07320 -0.5 -1.3 hypothetical protein compare
A4249_RS15150 -0.5 -1.3 hypothetical protein compare
A4249_RS13175 -0.5 -1.1 Rrf2 family transcriptional regulator compare
A4249_RS16570 -0.5 -2.0 hypothetical protein compare
A4249_RS02570 -0.5 -3.5 cytochrome c1 compare
A4249_RS00130 -0.5 -2.4 hypothetical protein compare
A4249_RS16460 -0.5 -1.7 hypothetical protein compare
A4249_RS09055 -0.5 -1.8 hypothetical protein compare
A4249_RS00080 -0.5 -2.0 DUF3298 and DUF4163 domain-containing protein compare
A4249_RS13745 -0.5 -2.9 DUF3576 domain-containing protein compare
A4249_RS03175 -0.5 -1.7 ParB N-terminal domain-containing protein compare
A4249_RS16280 -0.5 -2.1 general stress protein compare
A4249_RS12260 -0.4 -1.0 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS13010 -0.4 -2.3 FkbM family methyltransferase compare
A4249_RS07995 -0.4 -0.9 type II 3-dehydroquinate dehydratase compare
A4249_RS13750 -0.4 -1.0 hypothetical protein compare
A4249_RS00065 -0.4 -2.4 hypothetical protein compare
A4249_RS12140 -0.4 -1.8 ATP-binding protein compare
A4249_RS09330 -0.4 -0.9 glycine cleavage system protein GcvH compare
A4249_RS16725 -0.4 -1.2 hypothetical protein compare
A4249_RS14830 -0.4 -1.1 peptidoglycan DD-metalloendopeptidase family protein compare
A4249_RS06895 -0.4 -1.3 hypothetical protein compare
A4249_RS02675 -0.4 -2.0 N-acetyltransferase compare
A4249_RS15360 -0.4 -0.9 DNA replication/repair protein RecF compare
A4249_RS08720 -0.4 -1.9 PaaI family thioesterase compare
A4249_RS14780 -0.4 -1.6 NepR family anti-sigma factor compare
A4249_RS04215 -0.4 -1.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS07125 -0.4 -2.2 hypothetical protein compare
A4249_RS14065 -0.4 -1.3 MFS transporter compare
A4249_RS14825 -0.4 -2.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS14680 -0.4 -1.3 PAS domain-containing sensor histidine kinase compare
A4249_RS01905 -0.4 -0.4 TrbC/VirB2 family protein compare
A4249_RS00425 -0.4 -1.5 VOC family protein compare
A4249_RS15560 -0.4 -0.8 response regulator compare
A4249_RS11435 -0.4 -3.9 YdcF family protein compare
A4249_RS05845 -0.4 -0.8 sigma-70 family RNA polymerase sigma factor compare
A4249_RS07050 -0.4 -0.8 hypothetical protein compare
A4249_RS02575 -0.4 -1.7 hypothetical protein compare
A4249_RS16420 -0.4 -1.8 hypothetical protein compare
A4249_RS12825 -0.4 -0.8 SDR family oxidoreductase compare
A4249_RS14580 -0.4 -1.4 hypothetical protein compare
A4249_RS13450 -0.4 -1.3 PilZ domain-containing protein compare
A4249_RS13535 -0.4 -1.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS02820 -0.4 -0.7 Ppx/GppA phosphatase family protein compare
A4249_RS16165 -0.4 -1.4 homoserine O-succinyltransferase compare
A4249_RS08730 -0.4 -2.7 hypothetical protein compare
A4249_RS14010 -0.4 -2.3 DUF2141 domain-containing protein compare
A4249_RS10735 -0.4 -1.4 phosphogluconate dehydratase compare
A4249_RS00120 -0.4 -2.0 cytochrome c oxidase assembly protein compare
A4249_RS07170 -0.4 -1.8 hypothetical protein compare
A4249_RS15870 -0.4 -2.6 alpha/beta fold hydrolase compare
A4249_RS06510 -0.4 -2.0 hypothetical protein compare
A4249_RS10750 -0.4 -1.9 hypothetical protein compare
A4249_RS15285 -0.4 -1.5 hypothetical protein compare
A4249_RS10160 -0.4 -1.3 HK97 family phage prohead protease compare
A4249_RS02935 -0.4 -2.9 MFS transporter compare
A4249_RS06550 -0.4 -1.1 chorismate mutase compare
A4249_RS00050 -0.4 -0.5 type 1 glutamine amidotransferase compare
A4249_RS06485 -0.4 -1.4 hypothetical protein compare
A4249_RS12275 -0.4 -1.6 cobaltochelatase subunit CobT compare
A4249_RS01555 -0.4 -0.9 response regulator compare
A4249_RS00125 -0.3 -1.9 NUDIX domain-containing protein compare
A4249_RS01220 -0.3 -1.3 hypothetical protein compare
A4249_RS09735 -0.3 -2.0 NUDIX domain-containing protein compare
A4249_RS10990 -0.3 -0.9 ATP-dependent protease ATPase subunit HslU compare
A4249_RS09295 -0.3 -2.7 adenosine deaminase compare
A4249_RS01230 -0.3 -0.6 hypothetical protein compare
A4249_RS16765 -0.3 -0.8 hypothetical protein compare
A4249_RS12455 -0.3 -0.7 hypothetical protein compare
A4249_RS05590 -0.3 -1.1 amino acid ABC transporter substrate-binding protein compare
A4249_RS08705 -0.3 -1.9 response regulator compare
A4249_RS03480 -0.3 -1.9 SRPBCC family protein compare
A4249_RS14835 -0.3 -1.7 S41 family peptidase compare
A4249_RS03645 -0.3 -1.7 TonB-dependent receptor compare
A4249_RS11575 -0.3 -1.0 YeeE/YedE family protein compare
A4249_RS01285 -0.3 -1.4 head decoration protein compare
A4249_RS13495 -0.3 -1.4 organic hydroperoxide resistance protein compare
A4249_RS07155 -0.3 -2.8 hypothetical protein compare
A4249_RS04565 -0.3 -1.1 Rrf2 family transcriptional regulator compare
A4249_RS01120 -0.3 -1.4 uracil-DNA glycosylase compare
A4249_RS08520 -0.3 -1.3 hypothetical protein compare
A4249_RS00790 -0.3 -1.3 cell division protein ZapA compare
A4249_RS14155 -0.3 -1.4 thioredoxin compare
A4249_RS15845 -0.3 -1.5 hemerythrin domain-containing protein compare
A4249_RS10245 -0.3 -1.4 MucR family transcriptional regulator compare
A4249_RS14695 -0.3 -0.6 transcription elongation factor GreA compare
A4249_RS06690 -0.3 -1.1 DUF423 domain-containing protein compare
A4249_RS11600 -0.3 -2.1 cytochrome d ubiquinol oxidase subunit II compare
A4249_RS00700 -0.3 -0.9 hypothetical protein compare
A4249_RS13310 -0.3 -1.4 transglutaminase family protein compare
A4249_RS07380 -0.3 -1.1 exopolysaccharide biosynthesis protein compare
A4249_RS15180 -0.3 -1.6 hypothetical protein compare
A4249_RS13980 -0.3 -2.0 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
A4249_RS05380 -0.3 -1.2 hypothetical protein compare
A4249_RS04490 -0.3 -0.8 cobaltochelatase subunit CobS compare
A4249_RS13195 -0.3 -1.1 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS09160 -0.3 -1.0 MmcQ/YjbR family DNA-binding protein compare
A4249_RS12135 -0.3 -2.1 response regulator compare
A4249_RS09040 -0.3 -2.0 hypothetical protein compare
A4249_RS11240 -0.3 -1.9 alpha/beta hydrolase compare
A4249_RS15930 -0.3 -1.9 DUF3667 domain-containing protein compare
A4249_RS07165 -0.3 -2.6 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS09285 -0.3 -1.2 Tat pathway signal sequence domain protein compare
A4249_RS12030 -0.3 -1.3 prepilin peptidase compare
A4249_RS12025 -0.3 -1.8 Flp pilus assembly protein CpaB compare
A4249_RS05300 -0.3 -0.7 hypothetical protein compare
A4249_RS15300 -0.3 -2.0 sulfate adenylyltransferase subunit CysN compare
A4249_RS14715 -0.3 -1.8 PhoH family protein compare
A4249_RS08405 -0.3 -0.9 TIGR01841 family phasin compare
A4249_RS04955 -0.3 -1.3 DUF3606 domain-containing protein compare
A4249_RS13165 -0.3 -1.5 RsmB/NOP family class I SAM-dependent RNA methyltransferase compare
A4249_RS04725 -0.3 -1.8 acyl-CoA dehydrogenase compare
A4249_RS12015 -0.3 -2.1 CpaD family pilus assembly protein compare
A4249_RS02755 -0.3 -2.1 flagellin compare
A4249_RS16010 -0.3 -0.9 flagellar type III secretion system pore protein FliP compare
A4249_RS01300 -0.3 -1.7 gpW family head-tail joining protein compare
A4249_RS08945 -0.3 -1.8 GGDEF domain-containing protein compare
A4249_RS15885 -0.3 -2.1 tol-pal system-associated acyl-CoA thioesterase compare
A4249_RS05610 -0.3 -2.0 deoxyribodipyrimidine photo-lyase compare
A4249_RS15595 -0.3 -0.9 hypothetical protein compare
A4249_RS13190 -0.3 -0.8 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS07480 -0.3 -2.1 hypothetical protein compare
A4249_RS07140 -0.3 -2.1 hypothetical protein compare
A4249_RS07145 -0.3 -0.7 hypothetical protein compare
A4249_RS15975 -0.3 -1.4 DMT family protein compare
A4249_RS00755 -0.3 -1.2 YbdD/YjiX family protein compare
A4249_RS04845 -0.3 -1.6 HAD-IA family hydrolase compare
A4249_RS14445 -0.3 -0.6 hypothetical protein compare
A4249_RS09210 -0.3 -0.4 hypothetical protein compare
A4249_RS15315 -0.3 -2.3 sorbosone dehydrogenase family protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Adenine across organisms