Experiment set2IT095 for Variovorax sp. OAS795

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS06575 -5.7 -6.2 trehalose-phosphatase compare
ABID97_RS01565 -5.6 -11.2 DNA starvation/stationary phase protection protein compare
ABID97_RS05250 -5.3 -3.6 anthranilate synthase component I compare
ABID97_RS05260 -4.9 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS09180 -4.7 -4.5 DNA polymerase I compare
ABID97_RS08425 -4.7 -4.5 tryptophan synthase subunit alpha compare
ABID97_RS04960 -4.1 -1.8 ATP-binding protein compare
ABID97_RS11290 -4.1 -1.8 DNA repair protein RadC compare
ABID97_RS06345 -4.0 -2.8 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS20425 -4.0 -4.1 DUF2818 family protein compare
ABID97_RS13860 -3.9 -6.9 hypothetical protein compare
ABID97_RS02510 -3.8 -20.6 NADP-dependent malic enzyme compare
ABID97_RS05275 -3.7 -2.5 anthranilate phosphoribosyltransferase compare
ABID97_RS07850 -3.5 -6.7 ABC transporter ATP-binding protein compare
ABID97_RS07500 -3.5 -3.4 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS07430 -3.5 -7.6 pantoate--beta-alanine ligase compare
ABID97_RS23320 -3.4 -8.3 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS05280 -3.4 -2.4 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS23455 -3.4 -3.3 hypothetical protein compare
ABID97_RS07775 -3.3 -4.7 phosphoribosylglycinamide formyltransferase compare
ABID97_RS23450 -3.2 -4.9 MBOAT family protein compare
ABID97_RS07840 -3.2 -8.6 branched-chain amino acid ABC transporter permease compare
ABID97_RS05755 -3.2 -2.2 glycosyltransferase compare
ABID97_RS23325 -3.1 -7.4 cytochrome c biogenesis protein ResB compare
ABID97_RS08435 -3.0 -2.1 phosphoribosylanthranilate isomerase compare
ABID97_RS05765 -3.0 -2.1 UDP-glucose 4-epimerase GalE compare
ABID97_RS21150 -3.0 -11.2 FAD-dependent oxidoreductase compare
ABID97_RS23915 -2.9 -4.0 heme o synthase compare
ABID97_RS24920 -2.8 -1.9 Holliday junction branch migration protein RuvA compare
ABID97_RS14160 -2.8 -7.1 cell division protein ZapE compare
ABID97_RS12180 -2.8 -2.7 hypothetical protein compare
ABID97_RS07435 -2.8 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS14665 -2.8 -3.3 UvrD-helicase domain-containing protein compare
ABID97_RS07845 -2.8 -10.7 ABC transporter ATP-binding protein compare
ABID97_RS06450 -2.7 -1.9 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS20980 -2.7 -1.7 transcriptional repressor compare
ABID97_RS07855 -2.7 -1.7 ABC transporter ATP-binding protein compare
ABID97_RS16690 -2.7 -5.2 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS04480 -2.7 -2.6 magnesium/cobalt transporter CorA compare
ABID97_RS05925 -2.6 -8.0 LysR substrate-binding domain-containing protein compare
ABID97_RS17850 -2.6 -1.3 tetratricopeptide repeat protein compare
ABID97_RS04500 -2.6 -1.8 HPr(Ser) kinase/phosphatase compare
ABID97_RS23425 -2.5 -2.0 tRNA-Pro compare
ABID97_RS16565 -2.4 -10.9 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS06520 -2.4 -1.7 SAM-dependent methyltransferase compare
ABID97_RS08430 -2.4 -1.7 tryptophan synthase subunit beta compare
ABID97_RS05750 -2.4 -2.8 glycosyltransferase compare
ABID97_RS08775 -2.4 -2.1 ribosome small subunit-dependent GTPase A compare
ABID97_RS06275 -2.3 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS03805 -2.3 -1.9 ATP-binding protein compare
ABID97_RS20095 -2.3 -2.7 DNA topoisomerase IV subunit B compare
ABID97_RS06460 -2.3 -1.6 sigma 54-interacting transcriptional regulator compare
ABID97_RS16535 -2.3 -7.3 arginine/lysine/ornithine decarboxylase compare
ABID97_RS03680 -2.3 -6.9 lysophospholipid transporter LplT compare
ABID97_RS01650 -2.2 -1.5 orotidine-5'-phosphate decarboxylase compare
ABID97_RS20520 -2.2 -2.3 polyribonucleotide nucleotidyltransferase compare
ABID97_RS02455 -2.2 -3.6 nucleotidyltransferase family protein compare
ABID97_RS03800 -2.2 -2.9 O-antigen ligase family protein compare
ABID97_RS04505 -2.2 -2.5 ferric iron uptake transcriptional regulator compare
ABID97_RS01120 -2.2 -1.7 citrate synthase compare
ABID97_RS05370 -2.1 -5.1 ATP-binding protein compare
ABID97_RS25100 -2.1 -7.6 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS16985 -2.1 -2.8 transcriptional repressor LexA compare
ABID97_RS00255 -2.1 -10.4 type IV pilus twitching motility protein PilT compare
ABID97_RS05670 -2.0 -2.0 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS07405 -2.0 -9.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS29270 -2.0 -1.2 cytochrome b561 domain-containing protein compare
ABID97_RS18625 -2.0 -1.2 alpha/beta hydrolase compare
ABID97_RS08480 -1.9 -1.8 citrate synthase compare
ABID97_RS10885 -1.9 -2.5 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS19375 -1.9 -4.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS24370 -1.9 -2.7 DUF1841 family protein compare
ABID97_RS07610 -1.8 -1.3 response regulator transcription factor compare
ABID97_RS25405 -1.8 -8.3 16S ribosomal RNA compare
ABID97_RS20265 -1.8 -2.5 site-specific tyrosine recombinase XerD compare
ABID97_RS06150 -1.7 -5.8 tyrosine recombinase XerC compare
ABID97_RS09595 -1.7 -1.7 Arc family DNA-binding protein compare
ABID97_RS08710 -1.7 -4.9 polynucleotide adenylyltransferase PcnB compare
ABID97_RS23485 -1.7 -2.3 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS17590 -1.7 -9.0 endopeptidase La compare
ABID97_RS02110 -1.7 -9.9 type IV pilus modification protein PilV compare
ABID97_RS08445 -1.7 -7.8 FimV/HubP family polar landmark protein compare
ABID97_RS02125 -1.7 -12.9 PilC/PilY family type IV pilus protein compare
ABID97_RS23440 -1.7 -7.2 A24 family peptidase compare
ABID97_RS29375 -1.7 -1.6 VOC family protein compare
ABID97_RS27720 -1.7 -1.7 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS02115 -1.6 -7.9 PilW family protein compare
ABID97_RS17600 -1.6 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS02120 -1.6 -9.0 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02140 -1.6 -8.6 sugar transferase compare
ABID97_RS14625 -1.6 -4.0 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS25115 -1.6 -8.9 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABID97_RS14265 -1.6 -6.0 protease modulator HflC compare
ABID97_RS02145 -1.6 -7.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS19695 -1.6 -1.6 alpha/beta fold hydrolase compare
ABID97_RS24690 -1.6 -7.2 methyl-accepting chemotaxis protein compare
ABID97_RS14115 -1.6 -4.6 dihydrolipoyl dehydrogenase compare
ABID97_RS09830 -1.6 -1.1 hypothetical protein compare
ABID97_RS14260 -1.5 -5.6 FtsH protease activity modulator HflK compare
ABID97_RS25015 -1.5 -3.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS21165 -1.5 -2.4 energy-dependent translational throttle protein EttA compare
ABID97_RS25125 -1.5 -6.4 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS23225 -1.5 -9.3 glutamate synthase-related protein compare
ABID97_RS05365 -1.5 -3.1 DUF4390 domain-containing protein compare
ABID97_RS13560 -1.5 -1.3 ATP-binding cassette domain-containing protein compare
ABID97_RS22705 -1.5 -7.9 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS02130 -1.5 -8.9 type IV pilin protein compare
ABID97_RS15665 -1.5 -5.5 [protein-PII] uridylyltransferase compare
ABID97_RS10295 -1.5 -1.3 winged helix-turn-helix transcriptional regulator compare
ABID97_RS10705 -1.4 -4.3 H-NS histone family protein compare
ABID97_RS23435 -1.4 -9.1 type II secretion system F family protein compare
ABID97_RS23430 -1.4 -7.6 type IV-A pilus assembly ATPase PilB compare
ABID97_RS11960 -1.4 -1.2 hypothetical protein compare
ABID97_RS24170 -1.4 -2.3 ATP-binding protein compare
ABID97_RS17895 -1.4 -5.5 transcriptional regulator NrdR compare
ABID97_RS12020 -1.4 -1.5 polysaccharide pyruvyl transferase family protein compare
ABID97_RS13950 -1.4 -5.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS23275 -1.3 -5.4 type 4a pilus biogenesis protein PilO compare
ABID97_RS02135 -1.3 -6.2 GspH/FimT family pseudopilin compare
ABID97_RS03915 -1.3 -4.0 DUF4124 domain-containing protein compare
ABID97_RS11070 -1.3 -1.5 enolase C-terminal domain-like protein compare
ABID97_RS13990 -1.3 -3.3 amino acid aminotransferase compare
ABID97_RS10720 -1.3 -3.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS08360 -1.3 -4.0 DUF4845 domain-containing protein compare
ABID97_RS27195 -1.3 -1.3 hypothetical protein compare
ABID97_RS26945 -1.3 -1.2 DUF3606 domain-containing protein compare
ABID97_RS14105 -1.3 -1.6 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS08220 -1.3 -6.9 phosphoenolpyruvate carboxylase compare
ABID97_RS23650 -1.3 -9.4 serine/threonine-protein kinase compare
ABID97_RS17635 -1.3 -2.8 presqualene diphosphate synthase HpnD compare
ABID97_RS24705 -1.3 -2.7 response regulator compare
ABID97_RS19065 -1.3 -4.6 GntR family transcriptional regulator compare
ABID97_RS26395 -1.3 -1.5 DUF2231 domain-containing protein compare
ABID97_RS04760 -1.3 -1.1 SPOR domain-containing protein compare
ABID97_RS06175 -1.2 -8.1 STAS domain-containing protein compare
ABID97_RS14975 -1.2 -3.1 hypothetical protein compare
ABID97_RS02275 -1.2 -4.5 recombinase RecA compare
ABID97_RS16695 -1.2 -8.6 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS12140 -1.2 -4.6 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS01840 -1.2 -8.2 DUF1631 family protein compare
ABID97_RS07930 -1.2 -2.1 LysR family transcriptional regulator compare
ABID97_RS14200 -1.2 -4.1 pseudouridine synthase compare
ABID97_RS13945 -1.2 -4.6 acyl-CoA carboxylase subunit beta compare
ABID97_RS23285 -1.2 -5.5 pilus assembly protein PilM compare
ABID97_RS07395 -1.2 -1.6 glutaredoxin 3 compare
ABID97_RS23270 -1.2 -5.3 pilus assembly protein PilP compare
ABID97_RS15995 -1.2 -4.1 PilZ domain-containing protein compare
ABID97_RS01825 -1.2 -7.7 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS04705 -1.2 -1.3 MFS transporter compare
ABID97_RS13865 -1.1 -3.0 hypothetical protein compare
ABID97_RS26990 -1.1 -1.2 ornithine carbamoyltransferase compare
ABID97_RS03440 -1.1 -4.6 formimidoylglutamate deiminase compare
ABID97_RS12850 -1.1 -1.7 ribulose bisphosphate carboxylase small subunit compare
ABID97_RS06160 -1.1 -5.2 GTP-binding protein compare
ABID97_RS23950 -1.1 -6.0 cytochrome c oxidase assembly protein compare
ABID97_RS05640 -1.1 -1.9 PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein compare
ABID97_RS17425 -1.1 -7.0 TonB-dependent receptor compare
ABID97_RS25345 -1.1 -4.2 transporter associated domain-containing protein compare
ABID97_RS27500 -1.1 -1.3 AMP-binding protein compare
ABID97_RS09935 -1.1 -4.7 hypothetical protein compare
ABID97_RS17200 -1.1 -7.8 ribonuclease R compare
ABID97_RS18445 -1.1 -1.2 helix-turn-helix transcriptional regulator compare
ABID97_RS25130 -1.1 -5.2 carboxyl transferase domain-containing protein compare
ABID97_RS08570 -1.1 -3.8 ferrous iron transporter B compare
ABID97_RS28845 -1.1 -2.5 RNA polymerase sigma factor compare
ABID97_RS02210 -1.1 -5.7 pilin compare
ABID97_RS19025 -1.1 -0.8 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS01200 -1.1 -1.2 L-idonate 5-dehydrogenase compare
ABID97_RS04765 -1.1 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS23380 -1.1 -6.8 lytic transglycosylase domain-containing protein compare
ABID97_RS12415 -1.1 -7.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS06600 -1.1 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS16595 -1.1 -3.6 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS27795 -1.1 -0.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS23330 -1.1 -3.5 c-type cytochrome compare
ABID97_RS19645 -1.0 -1.9 glycine cleavage system aminomethyltransferase GcvT compare
ABID97_RS03910 -1.0 -1.4 orotate phosphoribosyltransferase compare
ABID97_RS23940 -1.0 -3.9 cytochrome c oxidase subunit 3 compare
ABID97_RS01105 -1.0 -1.8 AMP-binding protein compare
ABID97_RS19595 -1.0 -1.2 TRAP transporter small permease compare
ABID97_RS23185 -1.0 -1.1 ABC transporter ATP-binding protein compare
ABID97_RS02200 -1.0 -7.8 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS10690 -1.0 -5.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS17360 -1.0 -1.5 alpha/beta hydrolase compare
ABID97_RS25905 -1.0 -1.6 ABC transporter substrate-binding protein compare
ABID97_RS10695 -1.0 -4.2 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS06415 -1.0 -5.9 sigma-54 dependent transcriptional regulator compare
ABID97_RS22940 -1.0 -2.3 single-stranded-DNA-specific exonuclease RecJ compare
ABID97_RS14575 -1.0 -6.4 polyphosphate kinase 1 compare
ABID97_RS09630 -1.0 -1.3 hypothetical protein compare
ABID97_RS03785 -1.0 -1.5 recombination-associated protein RdgC compare
ABID97_RS22910 -1.0 -1.5 hypothetical protein compare
ABID97_RS22235 -1.0 -1.9 amino acid ABC transporter substrate-binding protein compare
ABID97_RS17595 -1.0 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS24750 -1.0 -3.7 redox-regulated ATPase YchF compare
ABID97_RS23655 -1.0 -3.4 YicC/YloC family endoribonuclease compare
ABID97_RS23665 -1.0 -1.2 DNA-directed RNA polymerase subunit omega compare
ABID97_RS17970 -1.0 -3.6 protein TolQ compare
ABID97_RS07260 -1.0 -2.9 TIM44-like domain-containing protein compare
ABID97_RS13995 -1.0 -6.7 excinuclease ABC subunit UvrB compare


Specific Phenotypes

None in this experiment

For Variovorax sp. OAS795 in carbon source experiments

For carbon source casamino acids across organisms