Experiment set2IT094 for Pseudomonas simiae WCS417

Compare to:

L-Arginine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -8.8 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02510 -6.8 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27040 -6.7 -4.3 3-phosphoglycerate dehydrogenase compare
PS417_01855 -6.7 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_23805 -6.5 -6.3 acetolactate synthase 3 regulatory subunit compare
PS417_21690 -6.1 -6.0 N-succinylarginine dihydrolase compare
PS417_18600 -5.9 -4.9 isopropylmalate isomerase compare
PS417_04415 -5.8 -11.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -5.6 -14.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_21700 -5.5 -6.5 arginine N-succinyltransferase compare
PS417_25725 -5.4 -16.8 anthranilate synthase component I compare
PS417_18585 -5.2 -8.0 3-isopropylmalate dehydrogenase compare
PS417_26740 -5.2 -11.1 homoserine acetyltransferase compare
PS417_23800 -5.0 -14.8 ketol-acid reductoisomerase compare
PS417_16465 -4.9 -13.0 sirohydrochlorin ferrochelatase compare
PS417_04420 -4.8 -12.2 histidinol dehydrogenase compare
PS417_01850 -4.7 -10.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25715 -4.6 -7.6 anthranilate phosphoribosyltransferase compare
PS417_23810 -4.5 -12.0 acetolactate synthase 3 catalytic subunit compare
PS417_20985 -4.5 -5.2 porin compare
PS417_18530 -4.3 -5.5 O-succinylhomoserine sulfhydrylase compare
PS417_20125 -4.3 -6.5 phosphoribosylglycinamide formyltransferase compare
PS417_00185 -4.2 -6.4 tryptophan synthase subunit beta compare
PS417_12855 -4.1 -7.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25710 -4.0 -2.5 indole-3-glycerol-phosphate synthase compare
PS417_23110 -3.9 -8.6 2-isopropylmalate synthase compare
PS417_21745 -3.8 -13.1 ABC transporter for L-Arginine, substrate-binding component (from data) conserved
PS417_26745 -3.8 -5.3 methionine biosynthesis protein MetW compare
PS417_00180 -3.8 -4.4 tryptophan synthase subunit alpha compare
PS417_23995 -3.7 -1.6 preprotein translocase subunit SecG compare
PS417_27795 -3.6 -2.2 orotate phosphoribosyltransferase compare
PS417_18595 -3.6 -5.3 3-isopropylmalate dehydratase compare
PS417_21710 -3.6 -4.6 Succinylornithine transaminase (EC 2.6.1.81) (from data) conserved
PS417_02415 -3.6 -6.3 phosphoserine phosphatase compare
PS417_01605 -3.4 -3.3 phosphoglycerate mutase compare
PS417_12290 -3.4 -6.9 sulfite reductase compare
PS417_21740 -3.4 -8.5 ABC transporter for L-Arginine, permease component 1 (from data) conserved
PS417_26890 -3.3 -5.6 dihydroxy-acid dehydratase compare
PS417_07640 -3.3 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01580 -3.2 -2.5 imidazole glycerol phosphate synthase compare
PS417_26995 -3.1 -9.6 phosphoserine phosphatase compare
PS417_21680 -3.1 -2.3 succinylglutamate desuccinylase compare
PS417_24155 -3.1 -4.3 ATP-binding protein compare
PS417_21695 -2.8 -2.7 succinylglutamate-semialdehyde dehydrogenase compare
PS417_21655 -2.7 -1.9 aspartate kinase compare
PS417_26985 -2.7 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01565 -2.4 -3.0 imidazole glycerol phosphate synthase compare
PS417_21705 -2.4 -7.5 arginine N-succinyltransferase compare
PS417_26040 -2.4 -5.0 malate synthase compare
PS417_21735 -2.4 -9.1 ABC transporter for L-Arginine, permease component 2 (from data) conserved
PS417_23900 -2.2 -13.0 poly(A) polymerase compare
PS417_21210 -2.1 -3.5 amidotransferase compare
PS417_25720 -2.1 -4.1 anthranilate synthase component II compare
PS417_01570 -2.1 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_18690 -2.1 -5.8 aromatic amino acid aminotransferase compare
PS417_24710 -2.0 -10.0 lipoprotein compare
PS417_20160 -2.0 -2.8 cysteine synthase compare
PS417_08125 -1.9 -1.7 prephenate dehydratase compare
PS417_01560 -1.8 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_17420 -1.8 -5.7 ethanol oxidation regulatory protein ercA (from data) compare
PS417_08220 -1.8 -1.6 epimerase compare
PS417_17415 -1.7 -4.4 histidine kinase compare
PS417_16570 -1.7 -10.1 isocitrate lyase compare
PS417_06375 -1.6 -1.7 deoxycytidine triphosphate deaminase compare
PS417_27140 -1.5 -5.3 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
PS417_23950 -1.5 -4.5 polynucleotide phosphorylase/polyadenylase compare
PS417_02555 -1.4 -11.1 exoribonuclease R compare
PS417_08230 -1.4 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08155 -1.3 -2.9 integration host factor subunit beta compare
PS417_23775 -1.3 -3.3 exodeoxyribonuclease V subunit beta compare
PS417_27290 -1.2 -2.4 hypothetical protein compare
PS417_27585 -1.2 -2.4 diaminopimelate epimerase compare
PS417_17455 -1.2 -2.9 cytochrome C compare
PS417_26990 -1.2 -1.6 RNA pyrophosphohydrolase compare
PS417_17460 -1.2 -7.0 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) compare
PS417_15095 -1.2 -3.8 hypothetical protein compare
PS417_27835 -1.1 -5.8 endoribonuclease compare
PS417_21750 -1.1 -9.1 acetyl-CoA synthetase compare
PS417_08225 -1.1 -5.1 acetolactate synthase compare
PS417_19095 -1.1 -1.9 hypothetical protein compare
PS417_20665 -1.1 -5.4 hypothetical protein compare
PS417_22570 -1.1 -1.3 H-NS histone compare
PS417_13255 -1.1 -2.6 ABC transporter compare
PS417_04180 -1.1 -4.3 GntR family transcriptional regulator compare
PS417_23315 -1.1 -1.8 transcriptional regulator compare
PS417_16715 -1.1 -2.2 DoxX family protein compare
PS417_22385 -1.1 -7.7 quinolinate synthase A compare
PS417_02485 -1.1 -4.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27435 -1.1 -4.5 polyphosphate kinase compare
PS417_03925 -1.1 -6.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_06530 -1.0 -2.6 membrane protein compare
PS417_17475 -1.0 -7.0 histidine kinase compare
PS417_17505 -1.0 -2.0 LuxR family transcriptional regulator compare
PS417_25645 -1.0 -4.6 peptidase M23 compare
PS417_03100 -1.0 -1.4 pilus assembly protein compare
PS417_05985 -1.0 -2.9 chemotaxis protein CheY compare
PS417_08205 -1.0 -3.6 acetyltransferase compare
PS417_06780 -0.9 -3.3 TetR family transcriptional regulator compare
PS417_14515 -0.9 -2.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_20610 -0.9 -1.7 hypothetical protein compare
PS417_12565 -0.9 -2.2 2-dehydro-3-deoxygluconokinase compare
PS417_00045 -0.9 -2.6 glycerol acyltransferase compare
PS417_24765 -0.9 -3.5 membrane protein compare
PS417_08245 -0.9 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_11925 -0.9 -1.8 hypothetical protein compare
PS417_22450 -0.9 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_27745 -0.9 -3.2 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_15305 -0.9 -2.2 type VI secretion protein compare
PS417_15470 -0.8 -3.2 saccharopine dehydrogenase compare
PS417_08200 -0.8 -2.9 hypothetical protein compare
PS417_20720 -0.8 -2.3 cbb3-type cytochrome c oxidase subunit I compare
PS417_02950 -0.8 -1.7 tRNA-dihydrouridine synthase B compare
PS417_17035 -0.8 -1.4 Cro/Cl family transcriptional regulator compare
PS417_16490 -0.8 -1.4 cell division protein FtsK compare
PS417_08195 -0.8 -5.0 hypothetical protein compare
PS417_10010 -0.8 -2.4 Replication protein P compare
PS417_00660 -0.8 -2.4 DSBA oxidoreductase compare
PS417_24745 -0.8 -3.4 gamma-glutamyl phosphate reductase compare
PS417_08730 -0.8 -1.8 cytochrome C compare
PS417_24810 -0.8 -5.7 aldehyde dehydrogenase compare
PS417_24835 -0.8 -3.0 hypothetical protein compare
PS417_24840 -0.8 -2.2 hypothetical protein compare
PS417_10535 -0.8 -3.9 hypothetical protein compare
PS417_00390 -0.8 -3.4 ABC transporter substrate-binding protein compare
PS417_07985 -0.8 -1.2 AbrB family transcriptional regulator compare
PS417_27035 -0.7 -2.2 FAD-linked oxidase compare
PS417_11845 -0.7 -3.4 RpiR family transcriptional regulator compare
PS417_04425 -0.7 -3.3 histidinol-phosphate aminotransferase compare
PS417_01210 -0.7 -4.3 hypothetical protein compare
PS417_27010 -0.7 -5.4 threonine dehydratase compare
PS417_08540 -0.7 -2.5 RNA helicase compare
PS417_09325 -0.7 -3.7 peptidase S41 compare
PS417_08685 -0.7 -1.3 flagellar hook-length control protein FliK compare
PS417_05650 -0.7 -2.9 leucyl-tRNA synthetase compare
PS417_10405 -0.7 -1.0 filamentous hemagglutinin compare
PS417_17500 -0.7 -2.9 sulfurtransferase compare
PS417_19425 -0.7 -0.9 allantoicase compare
PS417_13165 -0.7 -1.5 peroxidase compare
PS417_09440 -0.7 -1.9 MerR family transcriptional regulator compare
PS417_01950 -0.7 -2.7 malate dehydrogenase compare
PS417_04860 -0.7 -4.1 ATPase compare
PS417_20595 -0.7 -4.1 hypothetical protein compare
PS417_17425 -0.6 -2.0 hypothetical protein compare
PS417_24115 -0.6 -1.2 hypothetical protein compare
PS417_23770 -0.6 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_17390 -0.6 -1.8 DSBA oxidoreductase compare
PS417_03300 -0.6 -1.8 alanine acetyltransferase compare
PS417_00845 -0.6 -1.3 transcriptional regulator compare
PS417_27305 -0.6 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_18435 -0.6 -2.2 hypothetical protein compare
PS417_19620 -0.6 -1.4 hypothetical protein compare
PS417_24265 -0.6 -3.0 ABC transporter ATP-binding protein compare
PS417_03465 -0.6 -0.8 type III secretion protein compare
PS417_18755 -0.6 -1.7 CrtK compare
PS417_17795 -0.6 -1.5 ABC transporter permease compare
PS417_27870 -0.6 -2.2 ATP-dependent DNA helicase RecG compare
PS417_24030 -0.6 -1.6 MFS transporter compare
PS417_06355 -0.6 -2.1 protein-L-isoaspartate O-methyltransferase compare
PS417_07175 -0.6 -2.5 beta-lactamase compare
PS417_12745 -0.6 -2.7 multidrug transporter compare
PS417_07575 -0.6 -1.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_20645 -0.6 -5.0 membrane protein compare
PS417_18590 -0.6 -2.3 SAM-dependent methyltransferase compare
PS417_10245 -0.6 -1.3 hypothetical protein compare
PS417_12310 -0.6 -4.2 methionine synthase compare
PS417_11455 -0.6 -2.7 hypothetical protein compare
PS417_20635 -0.6 -0.8 ABC transporter ATP-binding protein compare
PS417_15465 -0.6 -1.9 carboxynorspermidine decarboxylase compare
PS417_02720 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_04305 -0.6 -0.9 aspartate ammonia-lyase compare
PS417_20025 -0.6 -1.2 alpha-ribazole phosphatase compare
PS417_12755 -0.6 -1.7 RND transporter compare
PS417_14075 -0.6 -1.5 hypothetical protein compare
PS417_13085 -0.6 -1.2 FMN-dependent NADH-azoreductase compare
PS417_19555 -0.6 -2.6 RNA polymerase sigma70 compare
PS417_18780 -0.6 -1.0 flavin reductase compare
PS417_25920 -0.6 -3.6 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_00220 -0.6 -1.0 hypothetical protein compare
PS417_28510 -0.6 -2.2 chromosome partitioning protein compare
PS417_08380 -0.6 -3.4 ABC transporter ATP-binding protein compare
PS417_01915 -0.6 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00490 -0.6 -2.5 iron ABC transporter ATP-binding protein compare
PS417_27005 -0.6 -0.9 membrane protein compare
PS417_07470 -0.6 -0.7 hypothetical protein compare
PS417_01715 -0.6 -1.1 hypothetical protein compare
PS417_00375 -0.6 -2.4 membrane protein compare
PS417_04075 -0.6 -2.8 peptide ABC transporter substrate-binding protein compare
PS417_20310 -0.6 -1.8 hypothetical protein compare
PS417_20755 -0.6 -2.6 membrane protein compare
PS417_10205 -0.6 -2.5 hypothetical protein compare
PS417_04270 -0.5 -2.7 ribonuclease G compare
PS417_11180 -0.5 -1.9 TetR family transcriptional regulator compare
PS417_28515 -0.5 -2.4 16S rRNA methyltransferase compare
PS417_18070 -0.5 -0.8 general secretion pathway protein GspH compare
PS417_02280 -0.5 -1.8 GlcNAc-PI de-N-acetylase compare
PS417_06245 -0.5 -1.5 zinc metallopeptidase RseP compare
PS417_02705 -0.5 -1.4 urease accessory protein UreF compare
PS417_09235 -0.5 -0.7 molecular chaperone compare
PS417_19075 -0.5 -3.6 ABC transporter ATP-binding protein compare
PS417_17470 -0.5 -1.2 LuxR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Arginine in Pseudomonas simiae WCS417

For carbon source L-Arginine across organisms