Experiment set2IT093 for Pseudomonas simiae WCS417

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.7 -5.3 isopropylmalate isomerase compare
PS417_27040 -6.7 -4.0 3-phosphoglycerate dehydrogenase compare
PS417_01855 -6.6 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_28220 -6.2 -4.3 LysR family transcriptional regulator compare
PS417_18585 -5.6 -7.6 3-isopropylmalate dehydrogenase compare
PS417_23800 -5.5 -12.2 ketol-acid reductoisomerase compare
PS417_01575 -5.4 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_12855 -5.2 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26740 -5.2 -14.1 homoserine acetyltransferase compare
PS417_24745 -5.1 -6.1 gamma-glutamyl phosphate reductase compare
PS417_25720 -5.0 -6.7 anthranilate synthase component II compare
PS417_25725 -5.0 -16.7 anthranilate synthase component I compare
PS417_26745 -4.9 -7.7 methionine biosynthesis protein MetW compare
PS417_04415 -4.9 -12.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01850 -4.9 -9.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -4.9 -16.7 acetolactate synthase 3 catalytic subunit compare
PS417_01565 -4.8 -6.6 imidazole glycerol phosphate synthase compare
PS417_18530 -4.8 -8.7 O-succinylhomoserine sulfhydrylase compare
PS417_23545 -4.7 -4.6 gamma-glutamyl kinase compare
PS417_23805 -4.7 -7.7 acetolactate synthase 3 regulatory subunit compare
PS417_02005 -4.6 -13.0 glutamate synthase compare
PS417_04420 -4.5 -12.7 histidinol dehydrogenase compare
PS417_02510 -4.5 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18560 -4.3 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18595 -4.2 -4.9 3-isopropylmalate dehydratase compare
PS417_00185 -4.1 -6.2 tryptophan synthase subunit beta compare
PS417_23050 -4.0 -4.3 trehalose PTS system, EII-BC components TreB (from data) conserved
PS417_02000 -4.0 -15.2 glutamate synthase compare
PS417_23035 -3.9 -6.2 D-trehalose PTS system, I, HPr, and IIA components (from data) conserved
PS417_16465 -3.9 -14.3 sirohydrochlorin ferrochelatase compare
PS417_25715 -3.9 -5.8 anthranilate phosphoribosyltransferase compare
PS417_24155 -3.7 -4.3 ATP-binding protein compare
PS417_23995 -3.6 -1.5 preprotein translocase subunit SecG compare
PS417_01560 -3.6 -4.2 imidazoleglycerol-phosphate dehydratase compare
PS417_23040 -3.6 -13.3 D-trehalose outer membrane porin (from data) conserved
PS417_12290 -3.6 -8.8 sulfite reductase compare
PS417_05595 -3.6 -7.5 ornithine carbamoyltransferase compare
PS417_27795 -3.6 -2.1 orotate phosphoribosyltransferase compare
PS417_06375 -3.5 -2.0 deoxycytidine triphosphate deaminase compare
PS417_22690 -3.4 -5.5 phosphogluconate dehydratase compare
PS417_23045 -3.4 -4.8 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) conserved
PS417_22685 -3.3 -15.4 Glucokinase (EC 2.7.1.2) (from data) conserved
PS417_26995 -3.3 -10.9 phosphoserine phosphatase compare
PS417_25710 -3.3 -2.7 indole-3-glycerol-phosphate synthase compare
PS417_01210 -3.3 -9.8 hypothetical protein compare
PS417_23110 -3.2 -6.8 2-isopropylmalate synthase compare
PS417_26730 -3.2 -1.8 pyrroline-5-carboxylate reductase compare
PS417_20125 -3.2 -4.5 phosphoribosylglycinamide formyltransferase compare
PS417_00180 -3.1 -4.6 tryptophan synthase subunit alpha compare
PS417_26890 -3.0 -5.5 dihydroxy-acid dehydratase compare
PS417_02415 -3.0 -7.4 phosphoserine phosphatase compare
PS417_01605 -2.9 -2.9 phosphoglycerate mutase compare
PS417_27195 -2.7 -2.2 N-acetylglutamate synthase compare
PS417_27835 -2.7 -9.5 endoribonuclease compare
PS417_22695 -2.7 -13.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_08230 -2.6 -3.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_20160 -2.5 -4.0 cysteine synthase compare
PS417_16570 -2.5 -9.3 isocitrate lyase compare
PS417_26040 -2.4 -7.5 malate synthase compare
PS417_04365 -2.4 -1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21705 -2.3 -6.9 arginine N-succinyltransferase compare
PS417_23770 -2.3 -3.6 exodeoxyribonuclease V subunit alpha compare
PS417_01580 -2.2 -1.9 imidazole glycerol phosphate synthase compare
PS417_22385 -2.2 -12.0 quinolinate synthase A compare
PS417_03925 -2.2 -9.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_01570 -2.1 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21700 -2.1 -6.0 arginine N-succinyltransferase compare
PS417_08205 -1.8 -4.7 acetyltransferase compare
PS417_21125 -1.8 -9.7 phosphoadenosine phosphosulfate reductase compare
PS417_27010 -1.8 -7.6 threonine dehydratase compare
PS417_01710 -1.8 -7.6 histidine utilization repressor compare
PS417_21035 -1.8 -9.7 multidrug transporter compare
PS417_08225 -1.7 -6.7 acetolactate synthase compare
PS417_04180 -1.6 -2.8 GntR family transcriptional regulator compare
PS417_22520 -1.6 -3.5 histidine kinase compare
PS417_03100 -1.6 -1.9 pilus assembly protein compare
PS417_06200 -1.6 -5.1 protein-PII uridylyltransferase compare
PS417_08125 -1.6 -1.4 prephenate dehydratase compare
PS417_07170 -1.6 -3.1 hypothetical protein compare
PS417_20985 -1.5 -3.2 porin compare
PS417_13510 -1.5 -1.9 polyketide cyclase compare
PS417_26990 -1.5 -1.9 RNA pyrophosphohydrolase compare
PS417_23900 -1.4 -8.7 poly(A) polymerase compare
PS417_24835 -1.4 -5.0 hypothetical protein compare
PS417_06680 -1.4 -8.7 nuclease PIN compare
PS417_18690 -1.4 -4.6 aromatic amino acid aminotransferase compare
PS417_24765 -1.4 -4.1 membrane protein compare
PS417_17945 -1.4 -1.4 hypothetical protein compare
PS417_28100 -1.3 -6.1 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) conserved
PS417_18590 -1.3 -2.2 SAM-dependent methyltransferase compare
PS417_27300 -1.3 -1.4 cell division protein ZapA compare
PS417_00650 -1.2 -1.1 LysR family transcriptional regulator compare
PS417_08195 -1.2 -5.8 hypothetical protein compare
PS417_27035 -1.2 -2.7 FAD-linked oxidase compare
PS417_03380 -1.2 -1.8 hypothetical protein compare
PS417_21690 -1.1 -5.5 N-succinylarginine dihydrolase compare
PS417_07115 -1.1 -8.6 L-aspartate oxidase compare
PS417_05365 -1.1 -1.8 FAD-binding protein compare
PS417_06645 -1.1 -6.2 RNA polymerase-associated protein RapA compare
PS417_24935 -1.1 -1.0 hypothetical protein compare
PS417_26005 -1.1 -6.6 biotin synthase compare
PS417_23775 -1.1 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_08220 -1.0 -1.0 epimerase compare
PS417_19805 -1.0 -1.7 flagellar M-ring protein FliF compare
PS417_00295 -1.0 -5.0 hypothetical protein compare
PS417_00485 -1.0 -2.2 ABC transporter permease compare
PS417_26695 -1.0 -1.5 uracil phosphoribosyltransferase compare
PS417_10535 -1.0 -3.3 hypothetical protein compare
PS417_21655 -1.0 -1.6 aspartate kinase compare
PS417_08130 -1.0 -1.9 aspartate aminotransferase compare
PS417_16990 -1.0 -4.7 acyl-CoA dehydrogenase compare
PS417_13620 -0.9 -1.9 thermostable hemolysin compare
PS417_00810 -0.9 -2.4 RNA polymerase sigma factor compare
PS417_23650 -0.9 -4.6 Kynureninase (EC 3.7.1.3) (from data) compare
PS417_08200 -0.9 -2.7 hypothetical protein compare
PS417_06620 -0.9 -2.7 hypothetical protein compare
PS417_17925 -0.9 -2.1 acyl-CoA dehydrogenase compare
PS417_06685 -0.9 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_08155 -0.9 -2.2 integration host factor subunit beta compare
PS417_19790 -0.9 -2.0 ATP synthase compare
PS417_23950 -0.9 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_05815 -0.9 -4.0 recombinase RecA compare
PS417_17000 -0.9 -1.4 MerR family transcriptional regulator compare
PS417_20665 -0.9 -4.6 hypothetical protein compare
PS417_03935 -0.9 -2.4 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_14980 -0.8 -1.3 universal stress protein UspA compare
PS417_15910 -0.8 -2.4 lysine transporter LysE compare
PS417_08580 -0.8 -4.0 histidine kinase compare
PS417_10245 -0.8 -1.7 hypothetical protein compare
PS417_27875 -0.8 -4.8 histidine kinase compare
PS417_01915 -0.8 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_05905 -0.8 -1.0 hypothetical protein compare
PS417_15480 -0.8 -1.9 ABC transporter substrate-binding protein compare
PS417_08135 -0.8 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22570 -0.8 -1.0 H-NS histone compare
PS417_04585 -0.8 -1.2 hypothetical protein compare
PS417_24615 -0.8 -1.2 hypothetical protein compare
PS417_17855 -0.8 -3.0 major facilitator transporter compare
PS417_25650 -0.8 -2.9 anhydro-N-acetylmuramic acid kinase compare
PS417_12840 -0.8 -2.2 TetR family transcriptional regulator compare
PS417_22300 -0.8 -1.4 LTXXQ domain protein compare
PS417_05695 -0.8 -3.5 transcriptional regulator compare
PS417_19835 -0.7 -1.5 flagellar biosynthesis protein FliS compare
PS417_11180 -0.7 -1.6 TetR family transcriptional regulator compare
PS417_26540 -0.7 -5.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_08430 -0.7 -3.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_04375 -0.7 -1.8 ABC transporter ATP-binding protein compare
PS417_00190 -0.7 -2.3 LysR family transcriptional regulator compare
PS417_07165 -0.7 -2.5 dihydrodipicolinate synthase compare
PS417_11400 -0.7 -0.9 phosphoglycerate mutase compare
PS417_05025 -0.7 -2.0 maleylacetoacetate isomerase compare
PS417_10010 -0.7 -2.7 Replication protein P compare
PS417_17515 -0.7 -3.3 GfdT protein compare
PS417_27005 -0.7 -1.0 membrane protein compare
PS417_00160 -0.7 -1.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_06095 -0.7 -1.7 energy transducer TonB compare
PS417_14515 -0.7 -1.6 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_11440 -0.7 -1.2 hypothetical protein compare
PS417_25270 -0.7 -2.7 NrdR family transcriptional regulator compare
PS417_23500 -0.7 -4.8 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_01095 -0.7 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_10810 -0.7 -1.1 hypothetical protein compare
PS417_24235 -0.7 -2.1 hypothetical protein compare
PS417_03705 -0.7 -1.4 2-alkenal reductase compare
PS417_12310 -0.7 -4.7 methionine synthase compare
PS417_08245 -0.7 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18445 -0.7 -1.6 glycerol-3-phosphatase compare
PS417_21360 -0.7 -1.0 termination factor Rho compare
PS417_11585 -0.7 -1.2 LuxR family transcriptional regulator compare
PS417_04410 -0.6 -1.0 hypothetical protein compare
PS417_17755 -0.6 -1.0 hypothetical protein compare
PS417_05455 -0.6 -3.6 XRE family transcriptional regulator compare
PS417_20610 -0.6 -1.1 hypothetical protein compare
PS417_23830 -0.6 -4.1 hypothetical protein compare
PS417_26000 -0.6 -4.0 8-amino-7-oxononanoate synthase compare
PS417_21430 -0.6 -1.8 3-oxoacyl-ACP synthase compare
PS417_23580 -0.6 -0.8 peptidylprolyl isomerase compare
PS417_20660 -0.6 -3.9 hypothetical protein compare
PS417_09545 -0.6 -1.8 aldehyde-activating protein compare
PS417_03560 -0.6 -1.2 GTP-binding protein compare
PS417_07950 -0.6 -2.2 MFS transporter compare
PS417_21480 -0.6 -1.4 23S rRNA pseudouridylate synthase compare
PS417_27305 -0.6 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_06195 -0.6 -3.3 succinyldiaminopimelate aminotransferase compare
PS417_02800 -0.6 -1.5 acetyltransferase compare
PS417_22450 -0.6 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_12355 -0.6 -1.9 magnesium chelatase compare
PS417_04270 -0.6 -3.5 ribonuclease G compare
PS417_06895 -0.6 -2.2 DNA-binding protein compare
PS417_12375 -0.6 -1.1 serine/threonine protein phosphatase compare
PS417_03200 -0.6 -2.3 ArsR family transcriptional regulator compare
PS417_21750 -0.6 -5.0 acetyl-CoA synthetase compare
PS417_14940 -0.6 -1.4 LysR family transcriptional regulator compare
PS417_18755 -0.6 -1.6 CrtK compare
PS417_26720 -0.6 -2.2 twitching motility protein PilT compare
PS417_20080 -0.6 -1.9 peptidase P60 compare
PS417_24100 -0.6 -3.5 transcriptional regulator PdhR compare
PS417_17565 -0.6 -2.2 branched-chain amino acid aminotransferase compare
PS417_11615 -0.6 -1.2 urea ABC transporter ATP-binding protein compare
PS417_11430 -0.6 -2.3 EamA compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Trehalose dihydrate in Pseudomonas simiae WCS417

For carbon source D-Trehalose dihydrate across organisms