Experiment set2IT093 for Variovorax sp. OAS795

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS13870 -6.9 -4.8 hypothetical protein compare
ABID97_RS23225 -5.1 -12.0 glutamate synthase-related protein compare
ABID97_RS08860 -4.8 -3.3 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS20615 -4.7 -6.0 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS01565 -4.5 -10.1 DNA starvation/stationary phase protection protein compare
ABID97_RS09405 -4.3 -1.9 xanthine dehydrogenase family protein subunit M compare
ABID97_RS05260 -4.3 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS11115 -4.1 -13.0 isocitrate lyase compare
ABID97_RS24045 -4.1 -4.9 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS25190 -4.1 -15.7 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABID97_RS08855 -4.1 -4.7 thiolase family protein compare
ABID97_RS28635 -3.9 -3.6 IclR family transcriptional regulator compare
ABID97_RS14920 -3.9 -11.5 IclR family transcriptional regulator compare
ABID97_RS08425 -3.8 -2.6 tryptophan synthase subunit alpha compare
ABID97_RS09180 -3.6 -2.5 DNA polymerase I compare
ABID97_RS16600 -3.6 -7.7 CysB family HTH-type transcriptional regulator compare
ABID97_RS11545 -3.6 -1.6 branched-chain amino acid ABC transporter permease compare
ABID97_RS13750 -3.5 -1.6 hypothetical protein compare
ABID97_RS05250 -3.4 -5.3 anthranilate synthase component I compare
ABID97_RS04710 -3.4 -7.9 malate synthase G compare
ABID97_RS13860 -3.4 -5.4 hypothetical protein compare
ABID97_RS03680 -3.4 -6.8 lysophospholipid transporter LplT compare
ABID97_RS23425 -3.3 -2.3 tRNA-Pro compare
ABID97_RS23220 -3.2 -1.9 glutamate synthase subunit beta compare
ABID97_RS24920 -3.2 -2.2 Holliday junction branch migration protein RuvA compare
ABID97_RS00255 -3.1 -11.9 type IV pilus twitching motility protein PilT compare
ABID97_RS10885 -3.0 -5.5 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS25085 -3.0 -3.0 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS02600 -3.0 -2.1 homoserine O-acetyltransferase compare
ABID97_RS03805 -2.9 -1.8 ATP-binding protein compare
ABID97_RS16535 -2.8 -6.1 arginine/lysine/ornithine decarboxylase compare
ABID97_RS16595 -2.8 -2.9 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS06575 -2.7 -5.8 trehalose-phosphatase compare
ABID97_RS07430 -2.7 -6.8 pantoate--beta-alanine ligase compare
ABID97_RS14160 -2.6 -5.0 cell division protein ZapE compare
ABID97_RS17600 -2.6 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS13990 -2.6 -2.5 amino acid aminotransferase compare
ABID97_RS07405 -2.4 -8.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS05275 -2.4 -1.7 anthranilate phosphoribosyltransferase compare
ABID97_RS25015 -2.4 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS02110 -2.4 -10.3 type IV pilus modification protein PilV compare
ABID97_RS14285 -2.4 -4.0 phosphoribosyltransferase compare
ABID97_RS15360 -2.4 -5.9 GTP-binding protein compare
ABID97_RS02115 -2.4 -10.7 PilW family protein compare
ABID97_RS17590 -2.3 -10.3 endopeptidase La compare
ABID97_RS02120 -2.3 -8.9 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS21150 -2.3 -8.9 FAD-dependent oxidoreductase compare
ABID97_RS15380 -2.3 -7.0 nitrite/sulfite reductase compare
ABID97_RS02125 -2.3 -15.7 PilC/PilY family type IV pilus protein compare
ABID97_RS26375 -2.3 -1.7 LysR substrate-binding domain-containing protein compare
ABID97_RS04685 -2.2 -1.6 LysR substrate-binding domain-containing protein compare
ABID97_RS07435 -2.2 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS23435 -2.2 -9.2 type II secretion system F family protein compare
ABID97_RS05280 -2.2 -1.5 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS00340 -2.1 -8.7 DUF2946 family protein compare
ABID97_RS13865 -2.1 -5.3 hypothetical protein compare
ABID97_RS02130 -2.1 -7.5 type IV pilin protein compare
ABID97_RS23450 -2.1 -2.8 MBOAT family protein compare
ABID97_RS22705 -2.1 -8.4 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS02135 -2.0 -3.6 GspH/FimT family pseudopilin compare
ABID97_RS28245 -2.0 -1.1 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS02420 -2.0 -6.4 protealysin inhibitor emfourin compare
ABID97_RS15370 -2.0 -9.5 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS10295 -2.0 -1.7 winged helix-turn-helix transcriptional regulator compare
ABID97_RS24690 -1.9 -7.2 methyl-accepting chemotaxis protein compare
ABID97_RS06380 -1.8 -1.6 50S ribosomal protein L11 methyltransferase compare
ABID97_RS23650 -1.8 -11.2 serine/threonine-protein kinase compare
ABID97_RS23440 -1.8 -9.3 A24 family peptidase compare
ABID97_RS01200 -1.8 -1.6 L-idonate 5-dehydrogenase compare
ABID97_RS03915 -1.8 -4.9 DUF4124 domain-containing protein compare
ABID97_RS22375 -1.8 -1.4 OsmC family protein compare
ABID97_RS03610 -1.8 -2.2 pentapeptide repeat-containing protein compare
ABID97_RS05765 -1.8 -1.2 UDP-glucose 4-epimerase GalE compare
ABID97_RS05750 -1.8 -1.7 glycosyltransferase compare
ABID97_RS23430 -1.7 -6.8 type IV-A pilus assembly ATPase PilB compare
ABID97_RS17850 -1.7 -0.9 tetratricopeptide repeat protein compare
ABID97_RS24705 -1.7 -3.4 response regulator compare
ABID97_RS07855 -1.7 -2.4 ABC transporter ATP-binding protein compare
ABID97_RS02140 -1.7 -4.9 sugar transferase compare
ABID97_RS08435 -1.7 -1.2 phosphoribosylanthranilate isomerase compare
ABID97_RS18565 -1.7 -1.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS06600 -1.7 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS06175 -1.6 -9.8 STAS domain-containing protein compare
ABID97_RS23230 -1.6 -7.3 transposase compare
ABID97_RS15995 -1.6 -3.5 PilZ domain-containing protein compare
ABID97_RS09935 -1.6 -4.4 hypothetical protein compare
ABID97_RS22860 -1.6 -1.6 MurR/RpiR family transcriptional regulator compare
ABID97_RS13245 -1.6 -1.0 XRE family transcriptional regulator compare
ABID97_RS01825 -1.6 -8.1 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS08220 -1.6 -7.7 phosphoenolpyruvate carboxylase compare
ABID97_RS25525 -1.6 -3.3 LacI family DNA-binding transcriptional regulator compare
ABID97_RS18820 -1.6 -1.5 PrpF domain-containing protein compare
ABID97_RS23280 -1.6 -4.8 PilN domain-containing protein compare
ABID97_RS23360 -1.6 -1.0 hypothetical protein compare
ABID97_RS16910 -1.6 -6.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS19220 -1.6 -1.4 DNA polymerase Y family protein compare
ABID97_RS16915 -1.6 -5.0 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS06315 -1.6 -8.5 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS06620 -1.5 -3.5 Crp/Fnr family transcriptional regulator compare
ABID97_RS07000 -1.5 -6.2 threonine ammonia-lyase, biosynthetic compare
ABID97_RS06345 -1.5 -2.9 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23275 -1.5 -7.1 type 4a pilus biogenesis protein PilO compare
ABID97_RS15505 -1.5 -0.9 ATP-binding cassette domain-containing protein compare
ABID97_RS02200 -1.5 -11.6 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS23265 -1.5 -5.7 type IV pilus secretin PilQ compare
ABID97_RS20025 -1.5 -1.6 D-glycerate dehydrogenase compare
ABID97_RS16560 -1.5 -5.4 response regulator compare
ABID97_RS23455 -1.5 -2.4 hypothetical protein compare
ABID97_RS12180 -1.5 -1.4 hypothetical protein compare
ABID97_RS05755 -1.5 -1.4 glycosyltransferase compare
ABID97_RS02145 -1.4 -3.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS06415 -1.4 -8.4 sigma-54 dependent transcriptional regulator compare
ABID97_RS11110 -1.4 -3.4 gamma-glutamylcyclotransferase family protein compare
ABID97_RS23285 -1.4 -6.5 pilus assembly protein PilM compare
ABID97_RS03800 -1.4 -1.4 O-antigen ligase family protein compare
ABID97_RS02455 -1.4 -2.8 nucleotidyltransferase family protein compare
ABID97_RS15665 -1.4 -3.1 [protein-PII] uridylyltransferase compare
ABID97_RS26830 -1.4 -1.4 hypothetical protein compare
ABID97_RS23380 -1.4 -6.5 lytic transglycosylase domain-containing protein compare
ABID97_RS24190 -1.4 -1.8 3-oxoadipyl-CoA thiolase compare
ABID97_RS18335 -1.3 -1.2 hypothetical protein compare
ABID97_RS22885 -1.3 -1.4 ABC transporter permease compare
ABID97_RS10695 -1.3 -4.1 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS12150 -1.3 -2.6 hypothetical protein compare
ABID97_RS07840 -1.3 -5.4 branched-chain amino acid ABC transporter permease compare
ABID97_RS15375 -1.3 -3.1 DUF934 domain-containing protein compare
ABID97_RS04505 -1.3 -1.5 ferric iron uptake transcriptional regulator compare
ABID97_RS09595 -1.3 -1.6 Arc family DNA-binding protein compare
ABID97_RS23270 -1.3 -5.4 pilus assembly protein PilP compare
ABID97_RS11960 -1.3 -1.1 hypothetical protein compare
ABID97_RS17970 -1.3 -3.0 protein TolQ compare
ABID97_RS11105 -1.3 -3.3 DMT family transporter compare
ABID97_RS04630 -1.3 -3.3 glutathione synthase compare
ABID97_RS11760 -1.3 -1.2 hypothetical protein compare
ABID97_RS15395 -1.3 -1.6 glutathione ABC transporter permease GsiD compare
ABID97_RS01070 -1.3 -2.1 Crp/Fnr family transcriptional regulator compare
ABID97_RS22620 -1.3 -4.7 response regulator transcription factor compare
ABID97_RS08710 -1.3 -3.7 polynucleotide adenylyltransferase PcnB compare
ABID97_RS04825 -1.3 -5.0 hypothetical protein compare
ABID97_RS01840 -1.2 -3.3 DUF1631 family protein compare
ABID97_RS15365 -1.2 -3.3 sulfate adenylyltransferase subunit CysD compare
ABID97_RS08445 -1.2 -5.2 FimV/HubP family polar landmark protein compare
ABID97_RS12590 -1.2 -0.8 triphosphoribosyl-dephospho-CoA synthase compare
ABID97_RS07610 -1.2 -0.9 response regulator transcription factor compare
ABID97_RS03655 -1.2 -1.8 glycolate oxidase subunit GlcE compare
ABID97_RS08775 -1.2 -1.2 ribosome small subunit-dependent GTPase A compare
ABID97_RS16770 -1.2 -1.3 hydroxymyristoyl-ACP dehydratase compare
ABID97_RS12995 -1.2 -1.5 hypothetical protein compare
ABID97_RS14090 -1.2 -0.9 response regulator transcription factor compare
ABID97_RS07845 -1.2 -5.8 ABC transporter ATP-binding protein compare
ABID97_RS12020 -1.2 -1.2 polysaccharide pyruvyl transferase family protein compare
ABID97_RS08440 -1.2 -4.1 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS07245 -1.2 -1.0 HIT family protein compare
ABID97_RS10920 -1.2 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
ABID97_RS21770 -1.2 -5.7 aminopeptidase N compare
ABID97_RS03910 -1.2 -0.8 orotate phosphoribosyltransferase compare
ABID97_RS14985 -1.2 -1.0 hypothetical protein compare
ABID97_RS17570 -1.2 -2.5 DUF6806 family protein compare
ABID97_RS07775 -1.2 -2.9 phosphoribosylglycinamide formyltransferase compare
ABID97_RS03630 -1.2 -2.6 P-II family nitrogen regulator compare
ABID97_RS16695 -1.2 -6.1 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS16565 -1.2 -6.2 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS18620 -1.2 -1.4 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein compare
ABID97_RS23485 -1.2 -1.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS04740 -1.2 -1.1 DUF2214 family protein compare
ABID97_RS14260 -1.2 -4.0 FtsH protease activity modulator HflK compare
ABID97_RS10560 -1.2 -2.3 3-hydroxyacyl-CoA dehydrogenase compare
ABID97_RS19495 -1.1 -2.8 glucan biosynthesis protein D compare
ABID97_RS27265 -1.1 -1.2 fumarylacetoacetate hydrolase family protein compare
ABID97_RS22060 -1.1 -0.9 MFS transporter compare
ABID97_RS02205 -1.1 -8.2 Wzy polymerase domain-containing protein compare
ABID97_RS06095 -1.1 -6.6 MBL fold metallo-hydrolase compare
ABID97_RS14665 -1.1 -1.5 UvrD-helicase domain-containing protein compare
ABID97_RS15465 -1.1 -6.7 sulfate ABC transporter substrate-binding protein compare
ABID97_RS03720 -1.1 -1.0 4-hydroxy-2-oxoheptanedioate aldolase compare
ABID97_RS05515 -1.1 -1.1 AEC family transporter compare
ABID97_RS17595 -1.1 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS12620 -1.1 -1.1 DUF447 domain-containing protein compare
ABID97_RS15695 -1.1 -2.6 peptide-methionine (R)-S-oxide reductase MsrB compare
ABID97_RS19385 -1.1 -2.0 short-chain fatty acyl-CoA regulator family protein compare
ABID97_RS27970 -1.1 -1.3 C-terminal binding protein compare
ABID97_RS12660 -1.1 -1.1 formylmethanofuran--tetrahydromethanopterin N-formyltransferase compare
ABID97_RS02460 -1.1 -6.9 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS08480 -1.1 -0.7 citrate synthase compare
ABID97_RS09620 -1.1 -2.0 hypothetical protein compare
ABID97_RS14975 -1.1 -2.7 hypothetical protein compare
ABID97_RS03205 -1.1 -4.8 acyl-CoA dehydrogenase compare
ABID97_RS14265 -1.0 -3.3 protease modulator HflC compare
ABID97_RS18080 -1.0 -1.0 alpha/beta hydrolase compare
ABID97_RS19730 -1.0 -2.7 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS22905 -1.0 -2.0 hypothetical protein compare
ABID97_RS07085 -1.0 -4.4 HAD family phosphatase compare
ABID97_RS18205 -1.0 -3.0 XRE family transcriptional regulator compare
ABID97_RS01755 -1.0 -3.9 pyruvate kinase compare
ABID97_RS13735 -1.0 -1.9 hypothetical protein compare
ABID97_RS09630 -1.0 -1.1 hypothetical protein compare
ABID97_RS12155 -1.0 -3.9 glycogen debranching protein GlgX compare
ABID97_RS13465 -1.0 -1.4 VOC family protein compare
ABID97_RS06020 -1.0 -2.2 hypothetical protein compare
ABID97_RS15495 -1.0 -2.2 aliphatic sulfonate ABC transporter permease SsuC compare


Specific Phenotypes

For 30 genes in this experiment

For carbon source Sodium butyrate in Variovorax sp. OAS795

For carbon source Sodium butyrate across organisms