Experiment set2IT093 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Fusidic acid sodium salt 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_03635 +6.4 30.9 DoxX family protein compare
CA264_03190 +5.9 16.6 hypothetical protein compare
CA264_03640 +5.5 26.1 TetR family transcriptional regulator compare
CA264_07185 +3.9 10.9 TetR family transcriptional regulator compare
CA264_03630 +2.7 14.1 PAS domain-containing sensor histidine kinase compare
CA264_03625 +2.2 11.8 proline iminopeptidase compare
CA264_19685 +2.1 2.9 DNA-binding response regulator compare
CA264_17030 +1.8 13.7 hypothetical protein compare
CA264_17335 +1.8 12.9 HAD family hydrolase compare
CA264_17350 +1.7 12.3 hypothetical protein compare
CA264_13015 +1.7 12.0 sensor histidine kinase compare
CA264_17345 +1.6 8.7 ABC transporter ATP-binding protein compare
CA264_08090 +1.6 9.4 short-chain dehydrogenase compare
CA264_04605 +1.5 11.3 hypothetical protein compare
CA264_03195 +1.4 8.4 alpha-glucan family phosphorylase compare
CA264_19875 +1.4 4.0 RNA methyltransferase compare
CA264_17340 +1.4 11.8 hypothetical protein compare
CA264_04335 +1.4 1.5 restriction endonuclease subunit R compare
CA264_04600 +1.4 11.2 hypothetical protein compare
CA264_01390 +1.3 6.9 iron ABC transporter permease compare
CA264_01985 +1.2 1.1 tRNA-Lys compare
CA264_06085 +1.2 4.2 hypothetical protein compare
CA264_18135 +1.2 6.6 ABC transporter ATP-binding protein compare
CA264_01385 +1.2 8.0 iron ABC transporter substrate-binding protein compare
CA264_01810 +1.1 5.4 hypothetical protein compare
CA264_16385 +1.1 7.6 DUF4271 domain-containing protein compare
CA264_16125 +1.1 6.6 DNA-binding response regulator compare
CA264_15850 +1.0 6.0 IclR family transcriptional regulator compare
CA264_19150 +1.0 7.0 TonB dependent receptor compare
CA264_04495 +1.0 6.5 histidine kinase compare
CA264_06630 +1.0 2.9 hypothetical protein compare
CA264_00810 +1.0 3.9 phospholipase compare
CA264_19935 +1.0 6.0 sodium:calcium symporter compare
CA264_16935 +0.9 1.9 hypothetical protein compare
CA264_04900 +0.9 4.8 bacillithiol biosynthesis deacetylase BshB1 compare
CA264_07190 +0.9 3.1 hypothetical protein compare
CA264_00660 +0.9 6.2 hypothetical protein compare
CA264_05400 +0.9 4.9 MarR family transcriptional regulator compare
CA264_17320 +0.9 7.8 hypothetical protein compare
CA264_07245 +0.9 4.7 hypothetical protein compare
CA264_12190 +0.9 4.1 hypothetical protein compare
CA264_20120 +0.9 2.2 hypothetical protein compare
CA264_18770 +0.9 4.8 hypothetical protein compare
CA264_03620 +0.9 5.3 acyl-CoA desaturase compare
CA264_14835 +0.9 6.8 hypothetical protein compare
CA264_14200 +0.9 1.1 NADH-quinone oxidoreductase subunit A compare
CA264_10575 +0.9 1.2 hypothetical protein compare
CA264_04570 +0.9 6.9 undecaprenyl-phosphate glucose phosphotransferase compare
CA264_18355 +0.9 4.1 thioredoxin family protein compare
CA264_14840 +0.9 7.4 hypothetical protein compare
CA264_15785 +0.9 1.4 hypothetical protein compare
CA264_07665 +0.8 5.7 sulfurtransferase compare
CA264_04740 +0.8 1.2 arsenate reductase (glutaredoxin) compare
CA264_13770 +0.8 2.8 DNA starvation/stationary phase protection protein compare
CA264_16115 +0.8 2.6 hypothetical protein compare
CA264_19925 +0.8 4.3 peptidyl-prolyl cis-trans isomerase compare
CA264_15045 +0.8 3.8 acetyl-CoA acetyltransferase compare
CA264_18120 +0.8 6.0 ABC transporter compare
CA264_15050 +0.8 7.2 3-hydroxyacyl-CoA dehydrogenase compare
CA264_07050 +0.8 5.2 serine acetyltransferase compare
CA264_07275 +0.8 5.2 hypothetical protein compare
CA264_07065 +0.8 2.6 hypothetical protein compare
CA264_14910 +0.8 2.3 30S ribosomal protein THX compare
CA264_10805 +0.8 4.1 NADPH-dependent oxidoreductase compare
CA264_09635 +0.8 5.1 hypothetical protein compare
CA264_07285 +0.8 6.5 alpha-amlyase compare
CA264_17075 +0.8 3.7 pterin-4-alpha-carbinolamine dehydratase compare
CA264_01555 +0.8 3.2 hypothetical protein compare
CA264_13030 +0.8 2.5 cysteine methyltransferase compare
CA264_19010 +0.8 7.0 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_14925 +0.8 2.0 hypothetical protein compare
CA264_08435 +0.7 1.5 transcription elongation factor GreAB compare
CA264_15845 +0.7 2.4 hypothetical protein compare
CA264_05275 +0.7 1.4 MFS transporter compare
CA264_13215 +0.7 2.8 hypothetical protein compare
CA264_09630 +0.7 5.0 hypothetical protein compare
CA264_07660 +0.7 4.5 hypothetical protein compare
CA264_20010 +0.7 2.6 gliding motility lipoprotein GldH compare
CA264_09340 +0.7 5.0 hypothetical protein compare
CA264_00045 +0.7 4.5 endopeptidase La compare
CA264_06860 +0.7 2.2 cytochrome C compare
CA264_20060 +0.7 1.0 ribosome silencing factor RsfS compare
CA264_11295 +0.7 4.7 hypothetical protein compare
CA264_09625 +0.7 4.2 hypothetical protein compare
CA264_02080 +0.7 0.7 hypothetical protein compare
CA264_12710 +0.7 2.9 SAM-dependent methyltransferase compare
CA264_13500 +0.7 3.9 hypothetical protein compare
CA264_08120 +0.7 4.1 electron transfer flavoprotein subunit alpha compare
CA264_17950 +0.7 3.3 hypothetical protein compare
CA264_11825 +0.7 1.9 hypothetical protein compare
CA264_17640 +0.7 3.5 acyl-CoA dehydrogenase compare
CA264_17100 +0.7 2.1 hypothetical protein compare
CA264_02720 +0.7 3.6 peroxiredoxin compare
CA264_13340 +0.7 1.2 iron-sulfur cluster assembly accessory protein compare
CA264_03530 +0.7 2.6 hypothetical protein compare
CA264_12195 +0.6 3.1 DoxX family protein compare
CA264_01790 +0.6 2.1 hypothetical protein compare
CA264_09620 +0.6 3.1 hypothetical protein compare
CA264_14805 +0.6 1.3 DNA-binding protein compare
CA264_01990 +0.6 1.6 tRNA-Lys compare
CA264_01665 +0.6 1.2 phenylalanine 4-monooxygenase compare
CA264_11135 +0.6 1.5 DUF2179 domain-containing protein compare
CA264_06090 +0.6 2.8 hypothetical protein compare
CA264_18165 +0.6 3.8 S1/P1 Nuclease compare
CA264_13315 +0.6 4.3 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA compare
CA264_20470 +0.6 3.6 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase compare
CA264_13665 +0.6 3.6 hypothetical protein compare
CA264_10920 +0.6 4.0 helix-turn-helix-type transcriptional regulator compare
CA264_16590 +0.6 1.2 site-2 protease family protein compare
CA264_10950 +0.6 1.7 phenylacetate-CoA oxygenase subunit PaaI compare
CA264_05095 +0.6 4.3 magnesium transporter compare
CA264_12910 +0.6 1.5 acyl-CoA-binding protein compare
CA264_10285 +0.6 1.0 hypothetical protein compare
CA264_01820 +0.6 2.2 hypothetical protein compare
CA264_17725 +0.6 4.0 tRNA pseudouridine synthase A compare
CA264_01800 +0.6 3.5 gluconate kinase compare
CA264_07205 +0.6 2.7 hypothetical protein compare
CA264_13495 +0.6 3.2 aldehyde dehydrogenase compare
CA264_14740 +0.6 3.4 dihydroorotase compare
CA264_15770 +0.6 1.8 FAD-dependent oxidoreductase compare
CA264_08115 +0.6 2.4 electron transfer flavoprotein subunit alpha compare
CA264_16130 +0.6 1.6 TetR family transcriptional regulator compare
CA264_17020 +0.6 3.0 methyltransferase type 11 compare
CA264_04125 +0.6 2.0 hypothetical protein compare
CA264_11970 +0.6 0.8 hypothetical protein compare
CA264_15150 +0.6 1.6 hypothetical protein compare
CA264_07645 +0.6 2.0 hypothetical protein compare
CA264_18505 +0.6 3.0 ABC transporter ATP-binding protein compare
CA264_02900 +0.6 1.9 hypothetical protein compare
CA264_12785 +0.6 1.9 Rieske (2Fe-2S) protein compare
CA264_15875 +0.5 4.9 bacillithiol biosynthesis cysteine-adding enzyme BshC compare
CA264_11130 +0.5 3.6 mechanosensitive ion channel protein MscS compare
CA264_02860 +0.5 1.3 hypothetical protein compare
CA264_04575 +0.5 4.7 glycosyltransferase compare
CA264_02980 +0.5 3.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
CA264_21380 +0.5 2.0 hypothetical protein compare
CA264_15790 +0.5 2.4 hypothetical protein compare
CA264_02945 +0.5 2.1 hypothetical protein compare
CA264_07485 +0.5 2.2 septal ring lytic transglycosylase RlpA family lipoprotein compare
CA264_05925 +0.5 3.9 hypothetical protein compare
CA264_11865 +0.5 1.9 hypothetical protein compare
CA264_18360 +0.5 2.2 osmotically inducible protein OsmC compare
CA264_04520 +0.5 3.3 DNA mismatch repair protein MutS compare
CA264_07055 +0.5 3.7 hypothetical protein compare
CA264_02190 +0.5 3.8 hypothetical protein compare
CA264_19005 +0.5 4.2 SusC/RagA family TonB-linked outer membrane protein compare
CA264_06345 +0.5 4.3 hypothetical protein compare
CA264_14905 +0.5 1.8 hypothetical protein compare
CA264_04480 +0.5 3.7 hypothetical protein compare
CA264_09800 +0.5 3.1 DNA-binding response regulator compare
CA264_20660 +0.5 2.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
CA264_16400 +0.5 2.3 bifunctional phosphoglucose/phosphomannose isomerase compare
CA264_14345 +0.5 1.6 hypothetical protein compare
CA264_15160 +0.5 2.5 nucleoside triphosphate pyrophosphohydrolase compare
CA264_16490 +0.5 2.6 glucose-1-phosphate thymidylyltransferase compare
CA264_00815 +0.5 1.7 cytidine deaminase compare
CA264_16120 +0.5 1.9 sensor histidine kinase compare
CA264_00730 +0.5 1.7 hypothetical protein compare
CA264_02055 +0.5 0.8 hypothetical protein compare
CA264_05265 +0.5 3.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
CA264_18020 +0.5 1.6 ABC transporter permease compare
CA264_07555 +0.5 3.0 aqualysin 1 compare
CA264_12200 +0.5 3.4 hypothetical protein compare
CA264_19885 +0.5 2.4 uridine kinase compare
CA264_19675 +0.5 2.2 RNA pseudouridine synthase compare
CA264_07045 +0.5 2.5 TetR family transcriptional regulator compare
CA264_17830 +0.5 2.3 transcriptional regulator compare
CA264_16905 +0.5 1.7 hypothetical protein compare
CA264_17860 +0.5 2.6 tRNA dihydrouridine synthase DusB compare
CA264_18160 +0.5 3.3 hypothetical protein compare
CA264_09600 +0.5 3.0 IS3 family transposase compare
CA264_11300 +0.5 3.0 mechanosensitive ion channel protein MscS compare
CA264_13510 +0.5 3.1 hypothetical protein compare
CA264_12840 +0.5 1.8 hypothetical protein compare
CA264_03400 +0.5 2.5 hypothetical protein compare
CA264_18220 +0.5 1.7 acylphosphatase compare
CA264_09430 +0.5 1.6 2-isopropylmalate synthase compare
CA264_18765 +0.5 3.5 ATPase compare
CA264_15835 +0.5 2.7 response regulator compare
CA264_16825 +0.5 2.3 hypothetical protein compare
CA264_16140 +0.5 2.7 efflux transporter periplasmic adaptor subunit compare
CA264_01680 +0.4 2.6 RDD family protein compare
CA264_13130 +0.4 2.5 peptidase S1 compare
CA264_02795 +0.4 2.4 hypothetical protein compare
CA264_08125 +0.4 2.4 tetratricopeptide repeat protein compare
CA264_17760 +0.4 3.0 leucine dehydrogenase compare
CA264_13020 +0.4 1.2 hypothetical protein compare
CA264_19615 +0.4 1.6 hypothetical protein compare
CA264_17065 +0.4 2.5 hypothetical protein compare
CA264_05730 +0.4 2.1 hypothetical protein compare
CA264_20265 +0.4 1.4 hypothetical protein compare
CA264_12775 +0.4 2.4 TIGR02453 family protein compare
CA264_05010 +0.4 2.6 hypothetical protein compare
CA264_07705 +0.4 1.3 hypothetical protein compare
CA264_04705 +0.4 1.6 hypothetical protein compare
CA264_18635 +0.4 1.9 phosphoribosylglycinamide formyltransferase compare
CA264_08490 +0.4 2.0 hypothetical protein compare
CA264_08550 +0.4 1.7 hypothetical protein compare
CA264_07280 +0.4 2.5 hypothetical protein compare
CA264_02005 +0.4 2.6 23S rRNA (uracil-5-)-methyltransferase RumA compare


Specific Phenotypes

For 10 genes in this experiment

For stress Fusidic acid sodium salt in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Fusidic acid sodium salt across organisms