| | gene | name | fitness | t score | description | |
|---|
| b2741 | rpoS | +1.9 | 9.4 | RNA polymerase sigma factor (NCBI) | compare |
| b4443 | gcvB | +1.7 | 2.2 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b3341 | rpsG | +1.7 | 2.2 | 30S ribosomal protein S7 (NCBI) | compare |
| b0018 | mokC | +1.3 | 1.6 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b1148 | ymfM | +1.3 | 2.6 | e14 prophage; predicted protein (NCBI) | compare |
| b3238 | yhcN | +1.3 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b4203 | rplI | +1.3 | 4.2 | 50S ribosomal protein L9 (NCBI) | compare |
| b2904 | gcvH | +1.2 | 1.8 | glycine cleavage system protein H (NCBI) | compare |
| b4578 | insP | +1.1 | 1.6 | no description | compare |
| b3979 | thrT | +1.1 | 1.5 | tRNA-Thr (NCBI) | compare |
| b2229 | b2229 | +1.1 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b4406 | yaeP | +1.1 | 1.6 | hypothetical protein (NCBI) | compare |
| b1085 | b1085 | +1.1 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1550 | b1550 | +1.0 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0240 | crl | +1.0 | 6.4 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4124 | dcuR | +1.0 | 7.9 | DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) | compare |
| b0870 | ltaE | +1.0 | 3.4 | L-allo-threonine aldolase, PLP-dependent (NCBI) | compare |
| b4172 | hfq | +1.0 | 2.3 | RNA-binding protein Hfq (NCBI) | compare |
| b2587 | kgtP | +0.9 | 4.6 | alpha-ketoglutarate transporter (NCBI) | compare |
| b1134 | ymfB | +0.9 | 1.7 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b2582 | trxC | +0.9 | 2.2 | thioredoxin 2 (NCBI) | compare |
| b3929 | rraA | +0.9 | 5.8 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1296 | ycjJ | +0.9 | 2.6 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1827 | kdgR | +0.9 | 2.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4174 | hflK | +0.9 | 6.6 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1540 | ydfH | +0.9 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3528 | dctA | +0.9 | 6.9 | C4 dicarboxylate/orotate:H+ symporter (DctA) (from data) | compare |
| b3752 | rbsK | +0.9 | 6.3 | ribokinase (NCBI) | compare |
| b1758 | b1758 | +0.9 | 1.5 | putative cytochrome oxidase (VIMSS) | compare |
| b2317 | dedA | +0.9 | 3.2 | conserved inner membrane protein (NCBI) | compare |
| b3769 | ilvM | +0.9 | 2.5 | acetolactate synthase II, small subunit (NCBI) | compare |
| b0960 | b0960 | +0.8 | 6.6 | orf, hypothetical protein (VIMSS) | compare |
| b2809 | b2809 | +0.8 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3545 | proK | +0.8 | 2.5 | tRNA-Pro (NCBI) | compare |
| b3973 | birA | +0.8 | 1.6 | biotin--protein ligase (NCBI) | compare |
| b1095 | fabF | +0.8 | 4.8 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1613 | manA | +0.8 | 2.1 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b4163 | glyV | +0.8 | 1.6 | tRNA-Gly (NCBI) | compare |
| b4125 | dcuS | +0.8 | 5.7 | sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) | compare |
| b0503 | ybbB | +0.8 | 2.0 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b1557 | cspB | +0.8 | 2.4 | Qin prophage; cold shock protein (NCBI) | compare |
| b4642 | yoeD | +0.8 | 1.5 | no description | compare |
| b1511 | ydeV | +0.8 | 3.1 | putative kinase (VIMSS) | compare |
| b4515 | ybgT | +0.8 | 1.5 | hypothetical protein (NCBI) | compare |
| b2618 | b2618 | +0.8 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4505 | insX | +0.8 | 1.4 | predicted IS protein (RefSeq) | compare |
| b2951 | yggS | +0.7 | 2.8 | predicted enzyme (NCBI) | compare |
| b4066 | yjcF | +0.7 | 2.4 | hypothetical protein (NCBI) | compare |
| b4175 | hflC | +0.7 | 5.1 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1620 | malI | +0.7 | 1.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4701 | sokX | +0.7 | 2.3 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1351 | racC | +0.7 | 2.4 | Rac prophage; predicted protein (NCBI) | compare |
| b0955 | ycbZ | +0.7 | 4.0 | predicted peptidase (NCBI) | compare |
| b2175 | spr | +0.7 | 2.4 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b2962 | yggX | +0.7 | 1.8 | hypothetical protein (NCBI) | compare |
| b1412 | azoR | +0.7 | 1.3 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b2377 | yfdY | +0.7 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b4511 | ybdZ | +0.7 | 1.2 | hypothetical protein (NCBI) | compare |
| b4704 | arrS | +0.7 | 1.2 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b4391 | yjjK | +0.7 | 4.4 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0652 | gltL | +0.7 | 2.6 | glutamate and aspartate transporter subunit (NCBI) | compare |
| b2410 | yfeH | +0.7 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b0340 | cynS | +0.7 | 2.0 | cyanate hydratase (NCBI) | compare |
| b4450 | arcZ | +0.7 | 1.9 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0615 | citF | +0.7 | 2.2 | citrate lyase, citrate-ACP transferase (alpha) subunit (NCBI) | compare |
| b1524 | yneH | +0.7 | 0.8 | predicted glutaminase (NCBI) | compare |
| b3977 | tyrU | +0.6 | 1.0 | tRNA-Tyr (NCBI) | compare |
| b1278 | pgpB | +0.6 | 1.4 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b1639 | ydhA | +0.6 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4457 | csrC | +0.6 | 1.8 | regulatory RNA (NCBI) | compare |
| b3034 | nudF | +0.6 | 2.9 | ADP-ribose pyrophosphatase (NCBI) | compare |
| b2704 | srlB | +0.6 | 1.8 | glucitol/sorbitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3742 | mioC | +0.6 | 2.5 | flavodoxin (NCBI) | compare |
| b3107 | yhaL | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4071 | nrfB | +0.6 | 1.8 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1248 | b1248 | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2807 | ygdD | +0.6 | 2.3 | conserved inner membrane protein (NCBI) | compare |
| b1743 | spy | +0.6 | 1.6 | envelope stress induced periplasmic protein (NCBI) | compare |
| b3149 | yraO | +0.6 | 2.6 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b0798 | ybiA | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |
| b3632 | rfaQ | +0.6 | 5.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1514 | lsrC | +0.6 | 1.1 | AI2 transporter (NCBI) | compare |
| b0685 | ybfE | +0.6 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2426 | ucpA | +0.6 | 1.3 | putative oxidoreductase (VIMSS) | compare |
| b4431 | rprA | +0.6 | 1.7 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1151 | ymfO | +0.6 | 1.2 | e14 prophage; conserved protein (RefSeq) | compare |
| b2490 | b2490 | +0.6 | 2.3 | putative protein processing element (VIMSS) | compare |
| b0368 | tauD | +0.6 | 2.1 | taurine dioxygenase (NCBI) | compare |
| b2897 | ygfY | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b1302 | puuE | +0.6 | 1.8 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b4176 | yjeT | +0.6 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b1171 | b1171 | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0447 | ybaO | +0.6 | 2.5 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b2204 | napH | +0.6 | 2.2 | quinol dehydrogenase membrane component (NCBI) | compare |
| b1359 | ydaU | +0.6 | 1.8 | Rac prophage; conserved protein (NCBI) | compare |
| b1427 | rimL | +0.6 | 1.4 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b1293 | sapB | +0.6 | 1.0 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4413 | sokC | +0.6 | 1.1 | regulatory antisense RNA (NCBI) | compare |
| b0382 | yaiB | +0.6 | 4.4 | hypothetical protein (NCBI) | compare |
| b0961 | yccF | +0.6 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b1824 | yobF | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b4113 | basR | +0.6 | 3.0 | DNA-binding response regulator in two-component regulatory system with BasS (NCBI) | compare |
| b3095 | yqjA | +0.6 | 3.9 | conserved inner membrane protein (NCBI) | compare |
| b4146 | yjeK | +0.6 | 1.9 | predicted lysine aminomutase (NCBI) | compare |
| b1671 | ydhX | +0.6 | 0.8 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b1185 | dsbB | +0.6 | 1.1 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b2808 | gcvA | +0.6 | 2.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0051 | ksgA | +0.6 | 2.9 | dimethyladenosine transferase (NCBI) | compare |
| b3928 | yiiU | +0.6 | 3.0 | hypothetical protein (NCBI) | compare |
| b4527 | b1354 | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1804 | rnd | +0.6 | 1.8 | ribonuclease D (NCBI) | compare |
| b1746 | astD | +0.5 | 2.5 | succinylglutamic semialdehyde dehydrogenase (NCBI) | compare |
| b1917 | yecC | +0.5 | 1.5 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3753 | rbsR | +0.5 | 3.9 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b3226 | yhcK | +0.5 | 2.6 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b1660 | ydhC | +0.5 | 2.1 | predicted transporter (NCBI) | compare |
| b1778 | yeaA | +0.5 | 1.1 | methionine sulfoxide reductase B (NCBI) | compare |
| b2009 | sbmC | +0.5 | 1.6 | DNA gyrase inhibitor (NCBI) | compare |
| b0014 | dnaK | +0.5 | 0.8 | molecular chaperone DnaK (NCBI) | compare |
| b0097 | yacA | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4545 | ypdJ | +0.5 | 1.5 | no description | compare |
| b2903 | gcvP | +0.5 | 4.0 | glycine dehydrogenase (NCBI) | compare |
| b1930 | yedF | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b1334 | fnr | +0.5 | 1.8 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1948 | fliP | +0.5 | 2.3 | flagellar biosynthesis protein P (NCBI) | compare |
| b2811 | ygdK | +0.5 | 1.9 | predicted Fe-S metabolism protein (NCBI) | compare |
| b2448 | yffQ | +0.5 | 1.8 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4582 | yoeA | +0.5 | 0.9 | no description | compare |
| b3198 | kdsC | +0.5 | 1.3 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2944 | sprT | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b4458 | oxyS | +0.5 | 0.7 | global regulatory RNA (NCBI) | compare |
| b1465 | narV | +0.5 | 0.8 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b1816 | yoaE | +0.5 | 2.1 | fused predicted membrane protein/conserved protein (NCBI) | compare |
| b0246 | yafW | +0.5 | 2.1 | CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system (NCBI) | compare |
| b0549 | ybcO | +0.5 | 1.1 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2783 | chpR | +0.5 | 1.3 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b4194 | ulaB | +0.5 | 1.6 | L-ascorbate-specific enzyme IIB component of PTS (NCBI) | compare |
| b1623 | add | +0.5 | 1.4 | adenosine deaminase (NCBI) | compare |
| b0831 | yliC | +0.5 | 1.9 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0881 | clpS | +0.5 | 1.1 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b3148 | yraN | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b4504 | ykfH | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b4444 | rygA | +0.5 | 1.5 | unknown RNA (NCBI) | compare |
| b1438 | ydcQ | +0.5 | 1.4 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b4484 | cpxP | +0.5 | 2.3 | periplasmic protein combats stress (NCBI) | compare |
| b1590 | ynfH | +0.5 | 1.7 | oxidoreductase, membrane subunit (NCBI) | compare |
| b1565 | ydfV | +0.5 | 1.6 | Qin prophage; predicted protein (NCBI) | compare |
| b1661 | cfa | +0.5 | 1.8 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b4596 | yciZ | +0.5 | 0.9 | hypothetical protein (RefSeq) | compare |
| b3210 | arcB | +0.5 | 3.1 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b1001 | yccE | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b0967 | yccW | +0.5 | 2.3 | predicted methyltransferase (RefSeq) | compare |
| b4360 | yjjA | +0.5 | 1.5 | putative glycoprotein/receptor (VIMSS) | compare |
| b3627 | rfaI | +0.5 | 4.0 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b3616 | tdh | +0.5 | 2.5 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b1672 | ydhW | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b1602 | pntB | +0.5 | 2.1 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b2325 | yfcL | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b2745 | truD | +0.5 | 2.7 | tRNA pseudouridine synthase D (NCBI) | compare |
| b2798 | ygdG | +0.5 | 1.8 | Ssb-binding protein, misidentified as ExoIX (RefSeq) | compare |
| b2156 | lysP | +0.5 | 3.2 | lysine transporter (NCBI) | compare |
| b1038 | csgF | +0.5 | 1.4 | predicted transport protein (NCBI) | compare |
| b1954 | dsrA | +0.5 | 1.2 | regulatory antisense RNA (NCBI) | compare |
| b2948 | yqgE | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0643 | ybeL | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b2895 | fldB | +0.5 | 1.0 | flavodoxin 2 (NCBI) | compare |
| b1777 | b1777 | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2123 | yehR | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2614 | grpE | +0.5 | 0.8 | heat shock protein (NCBI) | compare |
| b4622 | ytcA | +0.4 | 1.7 | hypothetical protein (RefSeq) | compare |
| b1686 | ydiI | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b1765 | ydjA | +0.4 | 0.5 | predicted oxidoreductase (NCBI) | compare |
| b0712 | ybgK | +0.4 | 1.9 | predicted enzyme subunit (NCBI) | compare |
| b1673 | ydhV | +0.4 | 2.2 | predicted oxidoreductase (NCBI) | compare |
| b2729 | hypD | +0.4 | 2.7 | protein required for maturation of hydrogenases (NCBI) | compare |
| b2934 | cmtB | +0.4 | 1.4 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2829 | ptsP | +0.4 | 3.4 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3496 | yhiP | +0.4 | 2.7 | predicted transporter (NCBI) | compare |
| b0059 | hepA | +0.4 | 3.7 | ATP-dependent helicase HepA (NCBI) | compare |
| b4630 | ykgP | +0.4 | 0.9 | no description | compare |
| b2896 | ygfX | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b2198 | ccmD | +0.4 | 1.0 | cytochrome c biogenesis protein (NCBI) | compare |
| b1971 | yedY | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b2643 | yfjX | +0.4 | 1.0 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |
| b0366 | tauB | +0.4 | 2.2 | taurine transporter subunit (NCBI) | compare |
| b2058 | wcaB | +0.4 | 0.6 | predicted acyl transferase (NCBI) | compare |
| b2199 | ccmC | +0.4 | 1.1 | heme exporter subunit (NCBI) | compare |
| b4337 | yjiO | +0.4 | 1.9 | multidrug efflux system protein (NCBI) | compare |
| b1640 | ydhH | +0.4 | 1.3 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b1007 | b1007 | +0.4 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b2314 | dedD | +0.4 | 1.3 | putative lipoprotein (VIMSS) | compare |
| b0705 | ybfL | +0.4 | 1.4 | putative receptor protein (VIMSS) | compare |
| b1709 | btuD | +0.4 | 0.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b3529 | yhjK | +0.4 | 3.4 | predicted diguanylate cyclase (RefSeq) | compare |
| b1823 | cspC | +0.4 | 1.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b3537 | yhjT | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4675 | yoaJ | +0.4 | 1.4 | expressed protein (RefSeq) | compare |
| b0082 | mraW | +0.4 | 1.4 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1251 | yciI | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4201 | priB | +0.4 | 1.1 | primosomal replication protein N (NCBI) | compare |