Experiment set2IT093 for Escherichia coli BW25113

Compare to:

D-Galacturonic Acid monohydrate carbon source MOPS

Group: carbon source
Media: MOPS minimal media_noCarbon + D-Galacturonic Acid monohydrate (20 mM)
Culturing: Keio_ML9, tube, Aerobic, at 37 (C), shaken=200 rpm
Growth: about 7.1 generations
By: Kelly on 6/30/2014
Media components: 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 9.5 mM Ammonium chloride, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate

Specific Phenotypes

For 12 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Escherichia coli BW25113

For carbon source D-Galacturonic Acid monohydrate across organisms

SEED Subsystems

Subsystem #Specific
D-Galacturonate and D-Glucuronate Utilization 4
Coenzyme A Biosynthesis 2
Alginate metabolism 1
D-gluconate and ketogluconates metabolism 1
Entner-Doudoroff Pathway 1
Methylglyoxal Metabolism 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
D-galacturonate degradation I 5 5 4
superpathway of hexuronide and hexuronate degradation 10 10 5
phosphopantothenate biosynthesis I 4 4 2
2-O-α-mannosyl-D-glycerate degradation 2 2 1
β-D-glucuronide and D-glucuronate degradation 3 3 1
superpathway of β-D-glucuronosides degradation 7 7 2
D-fructuronate degradation 4 4 1
D-galactarate degradation I 4 4 1
D-glucarate degradation I 4 4 1
glycolate and glyoxylate degradation I 4 4 1
phosphopantothenate biosynthesis III (archaea) 4 2 1
superpathway of coenzyme A biosynthesis I (bacteria) 9 9 2
superpathway of D-glucarate and D-galactarate degradation 5 5 1
4-deoxy-L-threo-hex-4-enopyranuronate degradation 5 4 1
pectin degradation II 5 3 1
superpathway of coenzyme A biosynthesis II (plants) 10 5 2
superpathway of microbial D-galacturonate and D-glucuronate degradation 31 19 6
superpathway of glycol metabolism and degradation 7 7 1
3,6-anhydro-α-L-galactopyranose degradation 7 4 1
alginate degradation 7 1 1
2-deoxy-D-ribose degradation II 8 3 1
Entner-Doudoroff pathway III (semi-phosphorylative) 9 6 1
Entner-Doudoroff pathway II (non-phosphorylative) 9 6 1
photorespiration I 9 5 1
photorespiration III 9 5 1
photorespiration II 10 6 1
formaldehyde assimilation I (serine pathway) 13 8 1