Experiment set2IT092 for Pseudomonas simiae WCS417

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.3 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_01575 -6.2 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01565 -6.1 -4.9 imidazole glycerol phosphate synthase compare
PS417_23805 -5.9 -5.8 acetolactate synthase 3 regulatory subunit compare
PS417_18595 -5.5 -5.0 3-isopropylmalate dehydratase compare
PS417_02005 -5.3 -12.1 glutamate synthase compare
PS417_23800 -5.2 -13.0 ketol-acid reductoisomerase compare
PS417_16465 -5.2 -12.0 sirohydrochlorin ferrochelatase compare
PS417_25720 -5.2 -8.5 anthranilate synthase component II compare
PS417_02510 -5.1 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26745 -5.0 -9.0 methionine biosynthesis protein MetW compare
PS417_18600 -4.9 -4.7 isopropylmalate isomerase compare
PS417_18560 -4.9 -13.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -4.9 -19.2 anthranilate synthase component I compare
PS417_18585 -4.9 -6.7 3-isopropylmalate dehydrogenase compare
PS417_01855 -4.8 -3.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_26740 -4.7 -9.8 homoserine acetyltransferase compare
PS417_00185 -4.6 -5.4 tryptophan synthase subunit beta compare
PS417_27795 -4.5 -2.1 orotate phosphoribosyltransferase compare
PS417_18530 -4.5 -8.0 O-succinylhomoserine sulfhydrylase compare
PS417_06375 -4.4 -2.1 deoxycytidine triphosphate deaminase compare
PS417_23810 -4.4 -16.1 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -4.3 -11.3 histidinol dehydrogenase compare
PS417_08125 -4.3 -2.0 prephenate dehydratase compare
PS417_24745 -4.1 -4.9 gamma-glutamyl phosphate reductase compare
PS417_01850 -4.1 -9.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_04415 -4.1 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27835 -4.0 -11.2 endoribonuclease compare
PS417_25715 -3.9 -7.0 anthranilate phosphoribosyltransferase compare
PS417_05595 -3.9 -8.1 ornithine carbamoyltransferase compare
PS417_02000 -3.8 -13.1 glutamate synthase compare
PS417_25710 -3.7 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_23545 -3.7 -4.3 gamma-glutamyl kinase compare
PS417_23995 -3.4 -1.6 preprotein translocase subunit SecG compare
PS417_26890 -3.4 -7.2 dihydroxy-acid dehydratase compare
PS417_12290 -3.3 -8.7 sulfite reductase compare
PS417_01570 -3.3 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01580 -3.3 -1.8 imidazole glycerol phosphate synthase compare
PS417_00180 -3.3 -3.9 tryptophan synthase subunit alpha compare
PS417_02415 -3.2 -5.6 phosphoserine phosphatase compare
PS417_12855 -3.1 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27195 -3.0 -2.7 N-acetylglutamate synthase compare
PS417_24155 -3.0 -4.0 ATP-binding protein compare
PS417_26995 -2.9 -8.8 phosphoserine phosphatase compare
PS417_26730 -2.9 -1.9 pyrroline-5-carboxylate reductase compare
PS417_20985 -2.8 -4.6 porin compare
PS417_20125 -2.8 -5.7 phosphoribosylglycinamide formyltransferase compare
PS417_18690 -2.8 -5.7 aromatic amino acid aminotransferase compare
PS417_23110 -2.6 -5.1 2-isopropylmalate synthase compare
PS417_01605 -2.3 -1.9 phosphoglycerate mutase compare
PS417_20160 -2.2 -4.1 cysteine synthase compare
PS417_07470 -2.1 -2.7 hypothetical protein compare
PS417_04365 -2.1 -1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_07640 -2.0 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23770 -1.9 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_26725 -1.9 -4.8 hypothetical protein compare
PS417_05455 -1.8 -6.0 XRE family transcriptional regulator compare
PS417_08220 -1.7 -1.5 epimerase compare
PS417_08230 -1.6 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04425 -1.5 -6.6 histidinol-phosphate aminotransferase compare
PS417_08225 -1.5 -4.5 acetolactate synthase compare
PS417_21630 -1.4 -3.2 magnesium transporter compare
PS417_07170 -1.4 -3.8 hypothetical protein compare
PS417_07595 -1.4 -3.4 PasA protein compare
PS417_00385 -1.4 -1.5 Fur family transcriptional regulator compare
PS417_21125 -1.3 -6.1 phosphoadenosine phosphosulfate reductase compare
PS417_01560 -1.3 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_16715 -1.3 -2.5 DoxX family protein compare
PS417_14655 -1.2 -1.7 lysine transporter LysE compare
PS417_08200 -1.1 -3.2 hypothetical protein compare
PS417_08205 -1.1 -2.9 acetyltransferase compare
PS417_12870 -1.0 -1.8 enoyl-CoA hydratase compare
PS417_27585 -1.0 -2.0 diaminopimelate epimerase compare
PS417_16490 -1.0 -1.8 cell division protein FtsK compare
PS417_12355 -1.0 -2.6 magnesium chelatase compare
PS417_08195 -1.0 -5.1 hypothetical protein compare
PS417_21655 -1.0 -1.6 aspartate kinase compare
PS417_00550 -1.0 -1.2 hypothetical protein compare
PS417_27300 -1.0 -1.2 cell division protein ZapA compare
PS417_24835 -1.0 -3.1 hypothetical protein compare
PS417_23375 -1.0 -1.7 cytochrome C oxidase compare
PS417_01635 -1.0 -3.6 nitrogen regulation protein NR(I) compare
PS417_19805 -0.9 -2.0 flagellar M-ring protein FliF compare
PS417_00075 -0.9 -1.4 hypothetical protein compare
PS417_23380 -0.9 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_03100 -0.9 -1.2 pilus assembly protein compare
PS417_08770 -0.9 -2.1 hypothetical protein compare
PS417_03525 -0.9 -1.5 hypothetical protein compare
PS417_18070 -0.8 -1.2 general secretion pathway protein GspH compare
PS417_10480 -0.8 -1.3 glutathione S-transferase compare
PS417_20610 -0.8 -1.5 hypothetical protein compare
PS417_16005 -0.8 -3.1 ATPase compare
PS417_06945 -0.8 -1.2 membrane protein compare
PS417_17645 -0.8 -1.2 RND transporter compare
PS417_16520 -0.8 -1.9 cold-shock protein compare
PS417_14295 -0.8 -1.9 AraC family transcriptional regulator compare
PS417_18025 -0.8 -2.5 cytochrome C compare
PS417_04375 -0.8 -1.8 ABC transporter ATP-binding protein compare
PS417_19645 -0.8 -2.2 chemotaxis protein compare
PS417_07010 -0.8 -2.0 pseudouridine synthase compare
PS417_22450 -0.8 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_18590 -0.8 -2.1 SAM-dependent methyltransferase compare
PS417_26420 -0.8 -1.1 hypothetical protein compare
PS417_23775 -0.8 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_20665 -0.7 -3.6 hypothetical protein compare
PS417_06045 -0.7 -1.7 membrane protein compare
PS417_07165 -0.7 -3.7 dihydrodipicolinate synthase compare
PS417_05905 -0.7 -1.2 hypothetical protein compare
PS417_18040 -0.7 -1.4 general secretion pathway protein GspN compare
PS417_13800 -0.7 -1.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_20030 -0.7 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_22260 -0.7 -2.1 segregation and condensation protein B compare
PS417_18780 -0.7 -1.2 flavin reductase compare
PS417_04185 -0.7 -1.6 hypothetical protein compare
PS417_15480 -0.7 -1.5 ABC transporter substrate-binding protein compare
PS417_09915 -0.7 -1.0 hypothetical protein compare
PS417_10405 -0.7 -0.9 filamentous hemagglutinin compare
PS417_26120 -0.7 -1.3 hypothetical protein compare
PS417_05985 -0.7 -2.0 chemotaxis protein CheY compare
PS417_24705 -0.7 -2.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_18370 -0.7 -1.2 hypothetical protein compare
PS417_21000 -0.7 -1.3 CrfX protein compare
PS417_13490 -0.7 -1.6 hypothetical protein compare
PS417_06200 -0.7 -2.4 protein-PII uridylyltransferase compare
PS417_14200 -0.7 -1.7 hypothetical protein compare
PS417_02365 -0.7 -2.5 hypothetical protein compare
PS417_06075 -0.7 -1.2 hypothetical protein compare
PS417_02670 -0.7 -2.1 ABC transporter compare
PS417_08245 -0.6 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21360 -0.6 -1.0 termination factor Rho compare
PS417_02370 -0.6 -1.2 ADP-ribose pyrophosphatase compare
PS417_07820 -0.6 -1.5 transposase compare
PS417_23755 -0.6 -1.3 membrane protein compare
PS417_03465 -0.6 -1.1 type III secretion protein compare
PS417_27475 -0.6 -1.5 membrane protein compare
PS417_11400 -0.6 -0.7 phosphoglycerate mutase compare
PS417_07015 -0.6 -2.3 helicase compare
PS417_08155 -0.6 -1.5 integration host factor subunit beta compare
PS417_21285 -0.6 -2.4 hypothetical protein compare
PS417_26755 -0.6 -1.9 nucleoside-triphosphate diphosphatase compare
PS417_26990 -0.6 -1.2 RNA pyrophosphohydrolase compare
PS417_15750 -0.6 -1.5 protease compare
PS417_21850 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_09545 -0.6 -1.8 aldehyde-activating protein compare
PS417_06645 -0.6 -3.6 RNA polymerase-associated protein RapA compare
PS417_09010 -0.6 -1.5 phosphohistidine phosphatase compare
PS417_05830 -0.6 -2.4 hypothetical protein compare
PS417_01130 -0.6 -1.6 L-glyceraldehyde 3-phosphate reductase compare
PS417_04220 -0.6 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_11585 -0.6 -1.2 LuxR family transcriptional regulator compare
PS417_08130 -0.6 -1.4 aspartate aminotransferase compare
PS417_15780 -0.6 -1.6 membrane protein compare
PS417_03260 -0.6 -1.6 5S ribosomal RNA compare
PS417_21705 -0.6 -2.6 arginine N-succinyltransferase compare
PS417_03560 -0.6 -1.0 GTP-binding protein compare
PS417_01915 -0.6 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06395 -0.6 -1.5 amino acid transporter compare
PS417_05650 -0.6 -2.4 leucyl-tRNA synthetase compare
PS417_17035 -0.6 -1.0 Cro/Cl family transcriptional regulator compare
PS417_02280 -0.6 -1.2 GlcNAc-PI de-N-acetylase compare
PS417_13305 -0.6 -1.0 hypothetical protein compare
PS417_23385 -0.6 -2.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_14075 -0.6 -1.5 hypothetical protein compare
PS417_07175 -0.5 -1.9 beta-lactamase compare
PS417_05820 -0.5 -1.5 recombinase RecX compare
PS417_27940 -0.5 -1.2 type VI secretion protein compare
PS417_27595 -0.5 -1.4 recombinase XerC compare
PS417_11090 -0.5 -2.1 LacI family transcriptional regulator compare
PS417_01210 -0.5 -3.2 hypothetical protein compare
PS417_12990 -0.5 -2.4 nucleoside hydrolase compare
PS417_01620 -0.5 -1.6 preprotein translocase subunit SecB compare
PS417_14515 -0.5 -1.3 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_19195 -0.5 -1.6 hypothetical protein compare
PS417_21625 -0.5 -0.8 DNA-binding protein compare
PS417_13055 -0.5 -1.5 aminotransferase compare
PS417_04985 -0.5 -1.9 ketosteroid isomerase compare
PS417_21595 -0.5 -1.0 flagellar biosynthesis protein FlgN compare
PS417_05200 -0.5 -1.2 DNA recombination protein RecO compare
PS417_12935 -0.5 -1.4 RNA polymerase sigma factor compare
PS417_23575 -0.5 -1.9 hypothetical protein compare
PS417_28425 -0.5 -2.2 lysine transporter LysE compare
PS417_12310 -0.5 -2.7 methionine synthase compare
PS417_14910 -0.5 -2.6 C4-dicarboxylate ABC transporter compare
PS417_24270 -0.5 -2.5 threonine transporter RhtB compare
PS417_19785 -0.5 -1.4 flagellar biogenesis protein compare
PS417_26565 -0.5 -1.1 LysR family transcriptional regulator compare
PS417_05815 -0.5 -2.1 recombinase RecA compare
PS417_02055 -0.5 -1.8 methyltransferase compare
PS417_08190 -0.5 -4.0 membrane protein compare
PS417_15885 -0.5 -0.6 GCN5 family acetyltransferase compare
PS417_04530 -0.5 -1.5 glycerate dehydrogenase compare
PS417_05445 -0.5 -0.8 DNA mismatch repair protein MutT compare
PS417_10205 -0.5 -1.8 hypothetical protein compare
PS417_10220 -0.5 -2.0 hypothetical protein compare
PS417_13255 -0.5 -1.2 ABC transporter compare
PS417_08685 -0.5 -1.2 flagellar hook-length control protein FliK compare
PS417_12765 -0.5 -2.3 oxidoreductase compare
PS417_00490 -0.5 -2.2 iron ABC transporter ATP-binding protein compare
PS417_02960 -0.5 -2.4 ribosomal protein L11 methyltransferase compare
PS417_26040 -0.5 -1.7 malate synthase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas simiae WCS417

For carbon source L-Malic acid disodium salt monohydrate across organisms