Experiment set2IT092 for Variovorax sp. OAS795

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS22620 -8.0 -9.5 response regulator transcription factor compare
ABID97_RS22625 -7.5 -12.5 HAMP domain-containing sensor histidine kinase compare
ABID97_RS23225 -5.9 -16.2 glutamate synthase-related protein compare
ABID97_RS20615 -5.5 -5.2 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS08220 -5.1 -10.9 phosphoenolpyruvate carboxylase compare
ABID97_RS05260 -5.0 -2.2 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS16600 -4.5 -9.5 CysB family HTH-type transcriptional regulator compare
ABID97_RS08425 -4.4 -5.3 tryptophan synthase subunit alpha compare
ABID97_RS02600 -4.4 -3.0 homoserine O-acetyltransferase compare
ABID97_RS05250 -4.3 -7.8 anthranilate synthase component I compare
ABID97_RS01565 -4.2 -9.2 DNA starvation/stationary phase protection protein compare
ABID97_RS20025 -4.2 -2.6 D-glycerate dehydrogenase compare
ABID97_RS07000 -4.2 -9.8 threonine ammonia-lyase, biosynthetic compare
ABID97_RS14095 -4.2 -11.1 PAS domain S-box protein compare
ABID97_RS06575 -4.2 -6.9 trehalose-phosphatase compare
ABID97_RS09180 -4.0 -4.8 DNA polymerase I compare
ABID97_RS27795 -4.0 -1.7 TetR/AcrR family transcriptional regulator compare
ABID97_RS05365 -3.9 -3.8 DUF4390 domain-containing protein compare
ABID97_RS13860 -3.9 -5.5 hypothetical protein compare
ABID97_RS16910 -3.9 -11.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS23220 -3.9 -2.2 glutamate synthase subunit beta compare
ABID97_RS13990 -3.9 -3.8 amino acid aminotransferase compare
ABID97_RS04610 -3.7 -8.7 potassium transporter Kup compare
ABID97_RS03805 -3.7 -2.2 ATP-binding protein compare
ABID97_RS25015 -3.7 -4.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS16595 -3.6 -6.1 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS19760 -3.6 -5.4 ROK family transcriptional regulator compare
ABID97_RS05280 -3.5 -2.4 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS07405 -3.3 -13.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS14090 -3.2 -2.0 response regulator transcription factor compare
ABID97_RS03800 -3.2 -2.2 O-antigen ligase family protein compare
ABID97_RS17265 -3.2 -3.2 two-component system response regulator OmpR compare
ABID97_RS18335 -3.1 -1.7 hypothetical protein compare
ABID97_RS03125 -3.1 -11.1 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS21300 -3.1 -4.2 phosphogluconate dehydratase compare
ABID97_RS08435 -3.0 -2.1 phosphoribosylanthranilate isomerase compare
ABID97_RS06345 -3.0 -4.6 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23455 -3.0 -4.1 hypothetical protein compare
ABID97_RS15665 -3.0 -7.8 [protein-PII] uridylyltransferase compare
ABID97_RS03680 -2.9 -6.7 lysophospholipid transporter LplT compare
ABID97_RS07130 -2.8 -5.3 D-arabinitol 4-dehydrogenase compare
ABID97_RS05765 -2.8 -2.7 UDP-glucose 4-epimerase GalE compare
ABID97_RS02455 -2.8 -4.6 nucleotidyltransferase family protein compare
ABID97_RS04480 -2.8 -2.7 magnesium/cobalt transporter CorA compare
ABID97_RS23645 -2.8 -2.2 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS05725 -2.8 -9.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABID97_RS08860 -2.8 -3.3 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS25085 -2.8 -3.5 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS04245 -2.7 -2.6 acyl-CoA thioesterase compare
ABID97_RS17590 -2.7 -10.8 endopeptidase La compare
ABID97_RS23450 -2.7 -5.5 MBOAT family protein compare
ABID97_RS15380 -2.7 -7.1 nitrite/sulfite reductase compare
ABID97_RS24055 -2.6 -3.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS03910 -2.6 -1.8 orotate phosphoribosyltransferase compare
ABID97_RS07065 -2.6 -9.6 glucose-6-phosphate dehydrogenase compare
ABID97_RS02420 -2.6 -6.7 protealysin inhibitor emfourin compare
ABID97_RS10885 -2.6 -5.3 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS14625 -2.6 -3.8 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS21150 -2.5 -8.5 FAD-dependent oxidoreductase compare
ABID97_RS07430 -2.5 -9.0 pantoate--beta-alanine ligase compare
ABID97_RS23935 -2.5 -2.2 twin transmembrane helix small protein compare
ABID97_RS07435 -2.5 -8.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS23710 -2.5 -11.9 RNase adapter RapZ compare
ABID97_RS17850 -2.5 -1.3 tetratricopeptide repeat protein compare
ABID97_RS14105 -2.4 -2.3 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS06600 -2.4 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS08430 -2.4 -1.7 tryptophan synthase subunit beta compare
ABID97_RS03110 -2.4 -6.0 helix-turn-helix transcriptional regulator compare
ABID97_RS15800 -2.3 -1.8 NAD(P)H-dependent oxidoreductase compare
ABID97_RS05275 -2.3 -2.2 anthranilate phosphoribosyltransferase compare
ABID97_RS23230 -2.3 -10.2 transposase compare
ABID97_RS07775 -2.3 -2.3 phosphoribosylglycinamide formyltransferase compare
ABID97_RS05795 -2.3 -5.9 malate/lactate/ureidoglycolate dehydrogenase compare
ABID97_RS27085 -2.3 -1.4 DNA alkylation repair protein compare
ABID97_RS01650 -2.3 -1.5 orotidine-5'-phosphate decarboxylase compare
ABID97_RS05670 -2.2 -2.1 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS14100 -2.2 -9.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS13450 -2.1 -3.1 TetR/AcrR family transcriptional regulator compare
ABID97_RS16985 -2.1 -3.8 transcriptional repressor LexA compare
ABID97_RS14850 -2.1 -2.3 P-II family nitrogen regulator compare
ABID97_RS06545 -2.1 -9.9 ROK family protein compare
ABID97_RS01755 -2.1 -7.0 pyruvate kinase compare
ABID97_RS14050 -2.1 -11.7 NAD(P)/FAD-dependent oxidoreductase compare
ABID97_RS00255 -2.1 -10.6 type IV pilus twitching motility protein PilT compare
ABID97_RS05370 -2.1 -5.5 ATP-binding protein compare
ABID97_RS08865 -2.1 -2.3 cyclase family protein compare
ABID97_RS05755 -2.0 -2.8 glycosyltransferase compare
ABID97_RS23425 -2.0 -1.5 tRNA-Pro compare
ABID97_RS28635 -2.0 -3.8 IclR family transcriptional regulator compare
ABID97_RS12180 -2.0 -1.9 hypothetical protein compare
ABID97_RS03640 -2.0 -5.6 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS02135 -2.0 -7.8 GspH/FimT family pseudopilin compare
ABID97_RS10295 -1.9 -1.7 winged helix-turn-helix transcriptional regulator compare
ABID97_RS17600 -1.9 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS08480 -1.9 -1.8 citrate synthase compare
ABID97_RS04505 -1.9 -2.1 ferric iron uptake transcriptional regulator compare
ABID97_RS17970 -1.9 -6.8 protein TolQ compare
ABID97_RS24705 -1.9 -4.6 response regulator compare
ABID97_RS06450 -1.9 -2.6 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS08855 -1.9 -4.1 thiolase family protein compare
ABID97_RS02145 -1.9 -8.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS28080 -1.9 -1.1 YbaN family protein compare
ABID97_RS02110 -1.8 -11.9 type IV pilus modification protein PilV compare
ABID97_RS17270 -1.8 -4.1 ATP-binding protein compare
ABID97_RS14665 -1.8 -3.0 UvrD-helicase domain-containing protein compare
ABID97_RS14115 -1.8 -4.2 dihydrolipoyl dehydrogenase compare
ABID97_RS23430 -1.8 -8.1 type IV-A pilus assembly ATPase PilB compare
ABID97_RS02115 -1.8 -8.4 PilW family protein compare
ABID97_RS06460 -1.8 -1.7 sigma 54-interacting transcriptional regulator compare
ABID97_RS25900 -1.7 -2.1 ABC transporter permease compare
ABID97_RS16785 -1.7 -2.3 transporter compare
ABID97_RS02460 -1.7 -9.9 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS15375 -1.7 -4.2 DUF934 domain-containing protein compare
ABID97_RS02120 -1.7 -8.2 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02125 -1.7 -13.3 PilC/PilY family type IV pilus protein compare
ABID97_RS03915 -1.7 -5.7 DUF4124 domain-containing protein compare
ABID97_RS08775 -1.7 -1.8 ribosome small subunit-dependent GTPase A compare
ABID97_RS21510 -1.7 -1.8 DUF4880 domain-containing protein compare
ABID97_RS15370 -1.7 -7.7 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS16535 -1.7 -5.5 arginine/lysine/ornithine decarboxylase compare
ABID97_RS14975 -1.6 -3.6 hypothetical protein compare
ABID97_RS16695 -1.6 -9.9 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS07260 -1.6 -4.8 TIM44-like domain-containing protein compare
ABID97_RS02130 -1.6 -8.0 type IV pilin protein compare
ABID97_RS27525 -1.6 -2.6 PadR family transcriptional regulator compare
ABID97_RS23435 -1.6 -9.3 type II secretion system F family protein compare
ABID97_RS03140 -1.6 -1.4 tRNA-Gly compare
ABID97_RS04760 -1.6 -1.6 SPOR domain-containing protein compare
ABID97_RS16690 -1.6 -5.4 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS11640 -1.6 -7.0 TetR family transcriptional regulator compare
ABID97_RS16915 -1.5 -5.9 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS23440 -1.5 -6.8 A24 family peptidase compare
ABID97_RS01840 -1.5 -9.1 DUF1631 family protein compare
ABID97_RS10355 -1.5 -5.7 FadR/GntR family transcriptional regulator compare
ABID97_RS12415 -1.5 -9.8 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS05800 -1.5 -5.0 altronate dehydratase family protein compare
ABID97_RS09405 -1.5 -1.3 xanthine dehydrogenase family protein subunit M compare
ABID97_RS05640 -1.5 -3.4 PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein compare
ABID97_RS23915 -1.4 -2.6 heme o synthase compare
ABID97_RS17225 -1.4 -6.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS24170 -1.4 -3.6 ATP-binding protein compare
ABID97_RS19375 -1.4 -3.9 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS28990 -1.4 -5.1 aspartate 1-decarboxylase compare
ABID97_RS06160 -1.4 -5.9 GTP-binding protein compare
ABID97_RS16470 -1.4 -1.9 translational GTPase TypA compare
ABID97_RS15995 -1.4 -3.8 PilZ domain-containing protein compare
ABID97_RS00340 -1.4 -9.7 DUF2946 family protein compare
ABID97_RS01825 -1.4 -8.5 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS22705 -1.4 -6.9 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS02140 -1.4 -4.7 sugar transferase compare
ABID97_RS22525 -1.3 -2.1 DedA family protein/thiosulfate sulfurtransferase GlpE compare
ABID97_RS25895 -1.3 -1.4 ABC transporter permease compare
ABID97_RS23380 -1.3 -6.8 lytic transglycosylase domain-containing protein compare
ABID97_RS13010 -1.3 -1.4 DotU family type IV/VI secretion system protein compare
ABID97_RS08445 -1.3 -6.5 FimV/HubP family polar landmark protein compare
ABID97_RS21945 -1.3 -3.6 hemolysin family protein compare
ABID97_RS05815 -1.3 -4.8 sialic acid TRAP transporter substrate-binding protein SiaP compare
ABID97_RS09935 -1.3 -4.0 hypothetical protein compare
ABID97_RS19630 -1.3 -1.0 TRAP transporter small permease compare
ABID97_RS08010 -1.3 -4.7 alpha-hydroxy acid oxidase compare
ABID97_RS06175 -1.3 -9.1 STAS domain-containing protein compare
ABID97_RS05215 -1.3 -1.4 hypothetical protein compare
ABID97_RS21190 -1.3 -4.0 sugar ABC transporter permease compare
ABID97_RS06420 -1.3 -5.6 ATP-binding protein compare
ABID97_RS15365 -1.3 -2.4 sulfate adenylyltransferase subunit CysD compare
ABID97_RS17895 -1.3 -4.1 transcriptional regulator NrdR compare
ABID97_RS20040 -1.3 -1.2 amino acid ABC transporter ATP-binding protein compare
ABID97_RS12170 -1.3 -1.3 DUF6531 domain-containing protein compare
ABID97_RS04765 -1.3 -1.9 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS09595 -1.3 -1.1 Arc family DNA-binding protein compare
ABID97_RS10705 -1.2 -3.3 H-NS histone family protein compare
ABID97_RS11495 -1.2 -1.6 indoleacetamide hydrolase compare
ABID97_RS26840 -1.2 -1.4 hypothetical protein compare
ABID97_RS04500 -1.2 -1.2 HPr(Ser) kinase/phosphatase compare
ABID97_RS23650 -1.2 -9.1 serine/threonine-protein kinase compare
ABID97_RS21185 -1.2 -6.9 carbohydrate ABC transporter permease compare
ABID97_RS28945 -1.2 -1.0 tripartite tricarboxylate transporter TctB family protein compare
ABID97_RS07630 -1.2 -2.4 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS12345 -1.2 -5.9 alpha/beta fold hydrolase compare
ABID97_RS12020 -1.2 -1.4 polysaccharide pyruvyl transferase family protein compare
ABID97_RS05810 -1.2 -1.8 TRAP transporter small permease compare
ABID97_RS10685 -1.2 -3.7 hypothetical protein compare
ABID97_RS18505 -1.2 -1.0 transglutaminase family protein compare
ABID97_RS19560 -1.2 -2.3 HAMP domain-containing sensor histidine kinase compare
ABID97_RS15575 -1.2 -1.7 sulfate ABC transporter permease subunit CysT compare
ABID97_RS22060 -1.2 -1.0 MFS transporter compare
ABID97_RS23265 -1.2 -5.0 type IV pilus secretin PilQ compare
ABID97_RS15695 -1.2 -3.9 peptide-methionine (R)-S-oxide reductase MsrB compare
ABID97_RS21655 -1.2 -3.5 ArsC family reductase compare
ABID97_RS14200 -1.2 -4.6 pseudouridine synthase compare
ABID97_RS06415 -1.1 -7.8 sigma-54 dependent transcriptional regulator compare
ABID97_RS21180 -1.1 -6.2 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
ABID97_RS21195 -1.1 -5.4 ABC transporter substrate-binding protein compare
ABID97_RS24040 -1.1 -1.7 MarR family transcriptional regulator compare
ABID97_RS28230 -1.1 -1.1 lipid-transfer protein compare
ABID97_RS13570 -1.1 -2.1 IclR family transcriptional regulator compare
ABID97_RS08240 -1.1 -1.0 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS26465 -1.1 -1.2 cytochrome c oxidase subunit II compare
ABID97_RS12995 -1.1 -1.6 hypothetical protein compare
ABID97_RS23270 -1.1 -4.5 pilus assembly protein PilP compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Mannose in Variovorax sp. OAS795

For carbon source D-Mannose across organisms