Experiment set2IT091 for Pseudomonas simiae WCS417

Compare to:

D-Sorbitol carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.5 -4.0 3-phosphoglycerate dehydrogenase compare
PS417_01855 -6.4 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_25720 -6.2 -8.5 anthranilate synthase component II compare
PS417_04415 -6.2 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18600 -6.0 -5.4 isopropylmalate isomerase compare
PS417_18595 -5.8 -4.9 3-isopropylmalate dehydratase compare
PS417_23800 -5.5 -12.3 ketol-acid reductoisomerase compare
PS417_04420 -5.4 -12.1 histidinol dehydrogenase compare
PS417_02510 -5.4 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18585 -5.4 -7.4 3-isopropylmalate dehydrogenase compare
PS417_11520 -5.3 -5.6 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) conserved
PS417_18560 -5.2 -13.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -5.2 -15.8 anthranilate synthase component I compare
PS417_12695 -5.0 -7.5 mannitol dehydrogenase compare
PS417_26740 -4.9 -11.0 homoserine acetyltransferase compare
PS417_01575 -4.7 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27795 -4.6 -2.0 orotate phosphoribosyltransferase compare
PS417_12855 -4.5 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01850 -4.4 -10.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_24745 -4.3 -7.1 gamma-glutamyl phosphate reductase compare
PS417_12710 -4.3 -9.3 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_02005 -4.3 -12.9 glutamate synthase compare
PS417_23810 -4.2 -11.0 acetolactate synthase 3 catalytic subunit compare
PS417_18530 -4.2 -5.3 O-succinylhomoserine sulfhydrylase compare
PS417_26745 -4.2 -6.1 methionine biosynthesis protein MetW compare
PS417_23805 -4.1 -7.2 acetolactate synthase 3 regulatory subunit compare
PS417_25715 -4.1 -7.3 anthranilate phosphoribosyltransferase compare
PS417_16465 -4.1 -11.3 sirohydrochlorin ferrochelatase compare
PS417_12290 -4.0 -9.0 sulfite reductase compare
PS417_23545 -3.8 -4.4 gamma-glutamyl kinase compare
PS417_23110 -3.8 -7.9 2-isopropylmalate synthase compare
PS417_01565 -3.8 -2.8 imidazole glycerol phosphate synthase compare
PS417_27195 -3.7 -2.1 N-acetylglutamate synthase compare
PS417_00185 -3.7 -6.1 tryptophan synthase subunit beta compare
PS417_02415 -3.7 -8.4 phosphoserine phosphatase compare
PS417_02000 -3.6 -14.5 glutamate synthase compare
PS417_23995 -3.5 -1.5 preprotein translocase subunit SecG compare
PS417_12700 -3.5 -6.9 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) conserved
PS417_12715 -3.5 -15.7 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_01580 -3.4 -1.8 imidazole glycerol phosphate synthase compare
PS417_05595 -3.4 -8.2 ornithine carbamoyltransferase compare
PS417_12690 -3.3 -8.7 xylulose kinase conserved
PS417_22690 -3.2 -6.9 phosphogluconate dehydratase compare
PS417_09725 -3.1 -8.1 transporter compare
PS417_26730 -3.1 -1.8 pyrroline-5-carboxylate reductase compare
PS417_00180 -3.0 -4.0 tryptophan synthase subunit alpha compare
PS417_01560 -3.0 -3.7 imidazoleglycerol-phosphate dehydratase compare
PS417_25710 -2.9 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_14940 -2.9 -3.7 LysR family transcriptional regulator compare
PS417_26995 -2.8 -11.4 phosphoserine phosphatase compare
PS417_20125 -2.8 -5.5 phosphoribosylglycinamide formyltransferase compare
PS417_26890 -2.8 -5.0 dihydroxy-acid dehydratase compare
PS417_06375 -2.7 -1.9 deoxycytidine triphosphate deaminase compare
PS417_22570 -2.6 -1.9 H-NS histone compare
PS417_12705 -2.6 -10.3 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_01570 -2.5 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20610 -2.5 -2.5 hypothetical protein compare
PS417_01605 -2.4 -2.0 phosphoglycerate mutase compare
PS417_11510 -2.4 -2.9 AraC family transcriptional regulator compare
PS417_01710 -2.4 -7.1 histidine utilization repressor compare
PS417_11515 -2.4 -3.2 sugar ABC transporter substrate-binding protein compare
PS417_24155 -2.3 -3.7 ATP-binding protein compare
PS417_21035 -2.3 -9.7 multidrug transporter compare
PS417_22385 -2.3 -9.3 quinolinate synthase A compare
PS417_24765 -2.2 -4.1 membrane protein compare
PS417_20985 -2.2 -4.2 porin compare
PS417_26040 -2.1 -6.6 malate synthase compare
PS417_03925 -2.1 -7.7 nicotinate-nucleotide pyrophosphorylase compare
PS417_20160 -2.0 -3.1 cysteine synthase compare
PS417_08125 -2.0 -1.6 prephenate dehydratase compare
PS417_28220 -1.9 -3.3 LysR family transcriptional regulator compare
PS417_08205 -1.8 -4.4 acetyltransferase compare
PS417_21705 -1.7 -6.2 arginine N-succinyltransferase compare
PS417_23770 -1.7 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_04180 -1.6 -5.2 GntR family transcriptional regulator compare
PS417_08220 -1.5 -1.3 epimerase compare
PS417_08155 -1.5 -3.1 integration host factor subunit beta compare
PS417_03965 -1.4 -4.4 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_26985 -1.4 -4.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27875 -1.4 -6.4 histidine kinase compare
PS417_16490 -1.4 -2.1 cell division protein FtsK compare
PS417_27010 -1.4 -8.8 threonine dehydratase compare
PS417_27835 -1.3 -7.2 endoribonuclease compare
PS417_06680 -1.3 -8.0 nuclease PIN compare
PS417_27035 -1.3 -2.9 FAD-linked oxidase compare
PS417_03975 -1.3 -8.6 FruA compare
PS417_05160 -1.2 -1.4 DNA polymerase III subunit chi compare
PS417_08195 -1.2 -7.0 hypothetical protein compare
PS417_08130 -1.2 -2.6 aspartate aminotransferase compare
PS417_24835 -1.2 -4.5 hypothetical protein compare
PS417_09705 -1.2 -3.1 hypothetical protein compare
PS417_15480 -1.2 -2.3 ABC transporter substrate-binding protein compare
PS417_06685 -1.2 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_07115 -1.2 -7.4 L-aspartate oxidase compare
PS417_17490 -1.2 -2.2 ABC transporter ATP-binding protein compare
PS417_17495 -1.1 -4.6 multidrug ABC transporter permease compare
PS417_28510 -1.1 -5.0 chromosome partitioning protein compare
PS417_23775 -1.1 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_16990 -1.1 -5.8 acyl-CoA dehydrogenase compare
PS417_08225 -1.1 -4.4 acetolactate synthase compare
PS417_01995 -1.1 -2.4 hypothetical protein compare
PS417_08580 -1.1 -5.6 histidine kinase compare
PS417_22640 -1.0 -3.1 cytochrome C biogenesis protein CcmE compare
PS417_08200 -1.0 -2.0 hypothetical protein compare
PS417_07165 -1.0 -3.5 dihydrodipicolinate synthase compare
PS417_26390 -1.0 -1.9 acyltransferase compare
PS417_21750 -1.0 -8.4 acetyl-CoA synthetase compare
PS417_23210 -1.0 -2.2 serine acetyltransferase compare
PS417_01280 -1.0 -1.3 peptidoglycan-binding protein LysM compare
PS417_08230 -1.0 -2.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_00550 -1.0 -1.2 hypothetical protein compare
PS417_00295 -1.0 -4.7 hypothetical protein compare
PS417_27005 -1.0 -1.2 membrane protein compare
PS417_22195 -1.0 -4.0 peptidase compare
PS417_27610 -1.0 -4.8 hypothetical protein compare
PS417_17455 -0.9 -3.0 cytochrome C compare
PS417_01290 -0.9 -1.9 ADP-ribose diphosphatase compare
PS417_24790 -0.9 -3.3 hypothetical protein compare
PS417_01735 -0.9 -3.5 ABC transporter permease compare
PS417_16570 -0.9 -5.0 isocitrate lyase compare
PS417_11930 -0.9 -4.8 hypothetical protein compare
PS417_17855 -0.9 -2.9 major facilitator transporter compare
PS417_03300 -0.9 -3.0 alanine acetyltransferase compare
PS417_20340 -0.9 -2.0 hypothetical protein compare
PS417_09915 -0.9 -1.5 hypothetical protein compare
PS417_12565 -0.9 -2.1 2-dehydro-3-deoxygluconokinase compare
PS417_17425 -0.9 -3.4 hypothetical protein compare
PS417_18435 -0.9 -2.8 hypothetical protein compare
PS417_28050 -0.9 -3.2 hypothetical protein compare
PS417_04270 -0.9 -6.1 ribonuclease G compare
PS417_09680 -0.9 -1.8 hydrolase compare
PS417_00845 -0.9 -1.5 transcriptional regulator compare
PS417_24935 -0.9 -0.8 hypothetical protein compare
PS417_20665 -0.9 -4.3 hypothetical protein compare
PS417_20030 -0.8 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_25940 -0.8 -3.8 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_17480 -0.8 -4.0 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_02700 -0.8 -2.6 urease accessory protein UreG compare
PS417_07875 -0.8 -1.0 hypothetical protein compare
PS417_14295 -0.8 -2.3 AraC family transcriptional regulator compare
PS417_15780 -0.8 -2.1 membrane protein compare
PS417_06895 -0.8 -3.0 DNA-binding protein compare
PS417_20635 -0.8 -1.0 ABC transporter ATP-binding protein compare
PS417_01620 -0.8 -1.8 preprotein translocase subunit SecB compare
PS417_25920 -0.8 -4.5 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_27605 -0.8 -3.6 hypothetical protein compare
PS417_16005 -0.8 -2.2 ATPase compare
PS417_16195 -0.8 -1.1 AraC family transcriptional regulator compare
PS417_06200 -0.8 -3.1 protein-PII uridylyltransferase compare
PS417_18885 -0.8 -1.7 GntR family transcriptional regulator compare
PS417_09470 -0.8 -1.1 hypothetical protein compare
PS417_06500 -0.8 -1.2 hypothetical protein compare
PS417_19125 -0.8 -2.0 LysR family transcriptional regulator compare
PS417_26305 -0.8 -2.5 AraC family transcriptional regulator compare
PS417_09710 -0.7 -2.6 dehydrogenase compare
PS417_03080 -0.7 -1.0 hypothetical protein compare
PS417_17240 -0.7 -2.4 trigger factor compare
PS417_17485 -0.7 -3.6 membrane protein compare
PS417_15750 -0.7 -1.7 protease compare
PS417_06710 -0.7 -1.4 beta-ketoadipyl CoA thiolase compare
PS417_21700 -0.7 -2.5 arginine N-succinyltransferase compare
PS417_03260 -0.7 -1.8 5S ribosomal RNA compare
PS417_05985 -0.7 -2.3 chemotaxis protein CheY compare
PS417_27975 -0.7 -2.9 type VI secretion protein compare
PS417_18755 -0.7 -1.8 CrtK compare
PS417_13140 -0.7 -1.2 oxidoreductase compare
PS417_14980 -0.7 -1.1 universal stress protein UspA compare
PS417_04375 -0.7 -2.0 ABC transporter ATP-binding protein compare
PS417_14075 -0.7 -1.9 hypothetical protein compare
PS417_08435 -0.7 -1.3 pilus assembly protein PilZ compare
PS417_27290 -0.7 -1.0 hypothetical protein compare
PS417_07170 -0.7 -2.2 hypothetical protein compare
PS417_28515 -0.7 -2.3 16S rRNA methyltransferase compare
PS417_27475 -0.7 -1.5 membrane protein compare
PS417_17420 -0.7 -4.6 ethanol oxidation regulatory protein ercA (from data) compare
PS417_18690 -0.7 -2.5 aromatic amino acid aminotransferase compare
PS417_12220 -0.7 -1.9 hydroxyacylglutathione hydrolase compare
PS417_04860 -0.7 -4.4 ATPase compare
PS417_05695 -0.7 -2.3 transcriptional regulator compare
PS417_14950 -0.7 -1.7 structural protein MipA compare
PS417_09700 -0.7 -3.0 transaldolase compare
PS417_17450 -0.7 -1.9 amino acid ABC transporter substrate-binding protein compare
PS417_05560 -0.7 -1.4 ABC transporter compare
PS417_15910 -0.7 -2.5 lysine transporter LysE compare
PS417_12840 -0.7 -2.3 TetR family transcriptional regulator compare
PS417_02720 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_10715 -0.7 -2.3 Cro/Cl family transcriptional regulator compare
PS417_05820 -0.7 -2.2 recombinase RecX compare
PS417_17435 -0.7 -4.6 dehydrogenase compare
PS417_13510 -0.7 -1.0 polyketide cyclase compare
PS417_01185 -0.7 -3.7 ribosomal protein S6 modification protein compare
PS417_13165 -0.7 -2.1 peroxidase compare
PS417_24810 -0.7 -4.3 aldehyde dehydrogenase compare
PS417_07010 -0.7 -1.8 pseudouridine synthase compare
PS417_24030 -0.6 -1.5 MFS transporter compare
PS417_17945 -0.6 -0.8 hypothetical protein compare
PS417_27535 -0.6 -4.5 chemotaxis protein CheY compare
PS417_13175 -0.6 -1.7 iron transporter compare
PS417_08245 -0.6 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_04915 -0.6 -1.3 glutamine ABC transporter ATP-binding protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Sorbitol in Pseudomonas simiae WCS417

For carbon source D-Sorbitol across organisms