Experiment set2IT091 for Pseudomonas simiae WCS417

Compare to:

D-Sorbitol carbon source

200 most detrimental genes:

  gene name fitness t score description  
PS417_16370 +1.8 12.3 chemotaxis protein CheY compare
PS417_10720 +1.7 5.8 chemotaxis protein CheY compare
PS417_19825 +1.5 10.2 ATPase AAA compare
PS417_27135 +1.3 1.8 glutamine synthetase compare
PS417_08620 +1.3 1.7 hypothetical protein compare
PS417_19560 +1.0 6.9 amino acid ABC transporter substrate-binding protein compare
PS417_05235 +0.9 2.6 peptidase inhibitor I42 compare
PS417_10025 +0.9 1.2 bacteriophage lambda NinG family protein compare
PS417_27800 +0.9 5.3 exodeoxyribonuclease III compare
PS417_21570 +0.9 3.9 flagellar basal body rod protein FlgB compare
PS417_11440 +0.9 1.7 hypothetical protein compare
PS417_01405 +0.9 2.1 sugar transporter compare
PS417_22840 +0.9 2.2 tRNA-Met compare
PS417_03465 +0.9 1.7 type III secretion protein compare
PS417_19870 +0.9 4.0 flagellar rod assembly protein FlgJ compare
PS417_08545 +0.9 2.0 aromatic ring-opening dioxygenase LigB compare
PS417_10865 +0.8 2.7 GNAT family acetyltransferase compare
PS417_21565 +0.8 3.7 flagellar basal body rod protein FlgC compare
PS417_06145 +0.8 1.3 hypothetical protein compare
PS417_06100 +0.8 2.2 SAM-dependent methyltransferase compare
PS417_27935 +0.8 1.7 type VI secretion protein compare
PS417_13075 +0.8 1.7 hypothetical protein compare
PS417_19695 +0.8 5.0 flagellar biosynthesis sigma factor compare
PS417_23490 +0.8 1.1 dihydrofolate reductase compare
PS417_19725 +0.8 3.7 flagellar biosynthesis protein FlhB compare
PS417_22150 +0.8 3.4 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_16000 +0.8 2.1 chemotaxis protein CheY compare
PS417_06365 +0.8 4.8 RNA polymerase sigma factor compare
PS417_17095 +0.8 2.6 spore coat protein compare
PS417_24895 +0.7 1.4 hypothetical protein compare
PS417_21585 +0.7 4.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_15650 +0.7 1.7 glutamine amidotransferase compare
PS417_28270 +0.7 2.4 hypothetical protein compare
PS417_14590 +0.7 1.7 LysR family transcriptional regulator compare
PS417_19830 +0.7 2.6 flagellar assembly protein FliT compare
PS417_00455 +0.7 1.7 hypothetical protein compare
PS417_26120 +0.7 1.4 hypothetical protein compare
PS417_09610 +0.7 3.6 beta-xylosidase compare
PS417_02485 +0.7 2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_11825 +0.7 1.8 transcriptional regulator compare
PS417_19885 +0.7 1.5 flagellar basal body rod protein FlgG compare
PS417_17305 +0.7 1.4 hypothetical protein compare
PS417_22700 +0.7 2.1 RNA polymerase subunit sigma-24 compare
PS417_21270 +0.7 1.1 translation initiation factor 2 compare
PS417_00925 +0.7 1.6 hypothetical protein compare
PS417_15285 +0.7 1.0 type VI secretion protein compare
PS417_15895 +0.7 1.4 iron dicitrate transport regulator FecR compare
PS417_12375 +0.7 2.0 serine/threonine protein phosphatase compare
PS417_01030 +0.7 1.4 glutamine ABC transporter substrate-binding protein compare
PS417_19720 +0.7 1.3 DNA-binding protein compare
PS417_22945 +0.7 1.6 phosphoribosylglycinamide formyltransferase compare
PS417_03970 +0.7 1.4 1-phosphofructokinase compare
PS417_14175 +0.6 1.7 ArsC family transcriptional regulator compare
PS417_06845 +0.6 1.3 lipoprotein compare
PS417_10275 +0.6 2.1 histidine kinase compare
PS417_27380 +0.6 2.0 GntR family transcriptional regulator compare
PS417_00705 +0.6 1.2 MarR family transcriptional regulator compare
PS417_12725 +0.6 3.8 AraC family transcriptional regulator compare
PS417_26125 +0.6 2.7 glutathione S-transferase compare
PS417_19740 +0.6 2.0 flagellar biosynthesis protein flip compare
PS417_01585 +0.6 2.2 amino acid ABC transporter substrate-binding protein compare
PS417_28265 +0.6 0.7 pyridoxamine kinase compare
PS417_08185 +0.6 2.4 glycosyl transferase compare
PS417_24355 +0.6 1.5 MFS transporter compare
PS417_02880 +0.6 1.0 copper chaperone compare
PS417_19730 +0.6 2.2 flagellar biosynthesis protein FliR compare
PS417_16395 +0.6 1.4 arsenate reductase compare
PS417_15770 +0.6 1.0 pyridoxine 5'-phosphate oxidase compare
PS417_08575 +0.6 2.1 MarR family transcriptional regulator compare
PS417_24370 +0.6 0.9 (2Fe-2S)-binding protein compare
PS417_14280 +0.6 1.7 hypothetical protein compare
PS417_10305 +0.6 1.7 hypothetical protein compare
PS417_00085 +0.6 2.5 16S rRNA methyltransferase compare
PS417_05100 +0.6 0.9 RNA polymerase sigma factor compare
PS417_09620 +0.6 3.7 lipopolysaccharide biosynthesis protein compare
PS417_21555 +0.6 4.1 flagellar hook protein FlgE compare
PS417_11950 +0.6 1.2 hypothetical protein compare
PS417_26335 +0.6 1.3 BetI family transcriptional regulator compare
PS417_01115 +0.6 1.1 serine acetyltransferase compare
PS417_09585 +0.6 3.5 acetyltransferase compare
PS417_19500 +0.5 1.5 antibiotic synthesis protein MbtH compare
PS417_17900 +0.5 1.5 transcriptional regulator compare
PS417_11070 +0.5 1.8 rhizopine-binding protein compare
PS417_15125 +0.5 1.4 glutathione S-transferase compare
PS417_27315 +0.5 1.1 hypothetical protein compare
PS417_26175 +0.5 0.8 sarcosine oxidase subunit gamma compare
PS417_02555 +0.5 4.4 exoribonuclease R compare
PS417_11015 +0.5 2.2 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_19745 +0.5 3.7 flagellar assembly protein FliO compare
PS417_24885 +0.5 1.7 transcriptional regulator compare
PS417_02435 +0.5 2.9 flagellar motor protein MotA compare
PS417_10050 +0.5 2.0 hypothetical protein compare
PS417_07245 +0.5 1.7 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_10145 +0.5 1.1 hypothetical protein compare
PS417_15820 +0.5 2.3 universal stress protein UspA compare
PS417_03350 +0.5 2.3 cytochrome C peroxidase compare
PS417_02890 +0.5 1.4 cobalt-precorrin-6X reductase compare
PS417_27865 +0.5 2.0 LysR family transcriptional regulator compare
PS417_04650 +0.5 0.6 D-alanine--D-alanine ligase compare
PS417_11455 +0.5 1.4 hypothetical protein compare
PS417_11830 +0.5 1.4 membrane protein compare
PS417_22780 +0.5 2.1 XRE family transcriptional regulator compare
PS417_27165 +0.5 2.0 alkanesulfonate monooxygenase compare
PS417_22040 +0.5 2.4 GNAT family acetyltransferase compare
PS417_17550 +0.5 2.6 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_05525 +0.5 2.4 Fis family transcriptional regulator compare
PS417_11820 +0.5 1.6 histidine kinase compare
PS417_21375 +0.5 2.5 ADP-ribosylglycohydrolase compare
PS417_28225 +0.5 1.0 hypothetical protein compare
PS417_12075 +0.5 2.1 DNA-binding protein compare
PS417_08825 +0.5 1.8 TetR family transcriptional regulator compare
PS417_04800 +0.5 1.3 alginate O-acetyltransferase compare
PS417_13195 +0.5 1.7 RND transporter MFP subunit compare
PS417_20725 +0.5 0.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_11445 +0.5 2.9 enoyl-CoA hydratase compare
PS417_07700 +0.5 1.1 chromosome partitioning protein ParA compare
PS417_10860 +0.5 1.5 flagellar basal body rod protein FlgG compare
PS417_08360 +0.5 1.4 DoxX family protein compare
PS417_12120 +0.5 2.3 IclR family transcriptional regulator compare
PS417_27555 +0.5 1.3 DNA-binding protein compare
PS417_14065 +0.5 2.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18475 +0.5 1.2 Pyrrolidone-carboxylate peptidase compare
PS417_09210 +0.5 0.7 TetR family transcriptional regulator compare
PS417_19835 +0.5 0.8 flagellar biosynthesis protein FliS compare
PS417_01790 +0.5 2.5 glucan biosynthesis protein G compare
PS417_12490 +0.5 1.0 autotransporter adhesin compare
PS417_27395 +0.4 1.9 amino acid ABC transporter permease compare
PS417_13895 +0.4 1.2 chemotaxis protein CheB compare
PS417_10135 +0.4 1.6 phage tail protein compare
PS417_01945 +0.4 1.7 nuclease compare
PS417_19800 +0.4 1.6 flagellar motor switch protein FliG compare
PS417_07870 +0.4 1.1 hypothetical protein compare
PS417_02335 +0.4 2.2 multidrug DMT transporter compare
PS417_17790 +0.4 2.2 ABC transporter compare
PS417_17960 +0.4 1.6 LysR family transcriptional regulator compare
PS417_16160 +0.4 1.0 ABC transporter substrate-binding protein compare
PS417_00995 +0.4 1.0 alpha/beta hydrolase compare
PS417_13650 +0.4 1.6 LacI family transcriptional regulator compare
PS417_02695 +0.4 1.0 protein hupE compare
PS417_08415 +0.4 2.7 hypothetical protein compare
PS417_26660 +0.4 1.9 protein PilI compare
PS417_23890 +0.4 1.7 ATPase compare
PS417_11540 +0.4 1.9 NAD synthetase compare
PS417_15400 +0.4 0.9 hypothetical protein compare
PS417_05635 +0.4 2.1 membrane protein compare
PS417_19735 +0.4 1.7 flagellar biosynthesis protein FliQ compare
PS417_19820 +0.4 2.2 histidine kinase compare
PS417_27485 +0.4 1.6 hypothetical protein compare
PS417_02760 +0.4 1.9 AraC family transcriptional regulator compare
PS417_11340 +0.4 1.8 prevent-host-death protein compare
PS417_08500 +0.4 1.9 LysR family transcriptional regulator compare
PS417_09600 +0.4 1.4 glycosyl transferase family 1 compare
PS417_22870 +0.4 1.1 lipoprotein compare
PS417_27065 +0.4 2.0 hypothetical protein compare
PS417_27435 +0.4 2.4 polyphosphate kinase compare
PS417_21220 +0.4 1.7 acetyl-CoA acetyltransferase compare
PS417_18905 +0.4 1.2 acyl-CoA dehydrogenase compare
PS417_20225 +0.4 2.7 GntR family transcriptional regulator compare
PS417_09690 +0.4 1.8 sugar dehydrogenase compare
PS417_18965 +0.4 1.6 dienelactone hydrolase compare
PS417_18080 +0.4 1.8 general secretion pathway protein GspF compare
PS417_13655 +0.4 2.3 xylulose kinase compare
PS417_11320 +0.4 1.1 hypothetical protein compare
PS417_27245 +0.4 1.6 aminotransferase DegT compare
PS417_19215 +0.4 1.2 polyphosphate kinase compare
PS417_05010 +0.4 0.7 IclR family transcriptional regulator compare
PS417_11175 +0.4 0.9 AraC family transcriptional regulator compare
PS417_06445 +0.4 0.9 iron-siderophore ABC transporter permease compare
PS417_22955 +0.4 1.7 Fe-S protein compare
PS417_13110 +0.4 2.2 methylase compare
PS417_16695 +0.4 1.4 hypothetical protein compare
PS417_11670 +0.4 1.3 multidrug transporter MATE compare
PS417_08625 +0.4 1.1 membrane protein compare
PS417_17440 +0.4 1.0 beta-lactamase compare
PS417_15510 +0.4 1.1 hypothetical protein compare
PS417_07085 +0.4 1.5 transcriptional regulator compare
PS417_18895 +0.4 2.3 glucarate dehydratase compare
PS417_08795 +0.4 1.7 hydroxypyruvate reductase compare
PS417_27180 +0.4 1.3 peroxidase compare
PS417_18020 +0.4 1.1 hypothetical protein compare
PS417_19765 +0.4 2.7 flagellar hook-length control protein compare
PS417_21390 +0.4 2.0 hypothetical protein compare
PS417_17835 +0.4 1.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_06970 +0.4 0.9 LysR family transcriptional regulator compare
PS417_18930 +0.4 0.9 restriction endonuclease subunit S compare
PS417_24585 +0.4 3.1 AMP nucleosidase compare
PS417_21865 +0.4 1.5 hypothetical protein compare
PS417_17320 +0.4 1.1 phenylhydantoinase compare
PS417_07295 +0.4 2.4 hypothetical protein compare
PS417_21625 +0.4 0.7 DNA-binding protein compare
PS417_06635 +0.4 0.9 ferredoxin compare
PS417_13335 +0.4 2.2 aldo/keto reductase compare
PS417_12005 +0.4 1.5 hypothetical protein compare
PS417_02630 +0.4 1.1 NAD synthetase compare
PS417_16020 +0.4 1.8 LysR family transcriptional regulator compare
PS417_20715 +0.4 1.3 cytochrome Cbb3 compare
PS417_03090 +0.4 2.1 type II secretion system protein F compare
PS417_01230 +0.4 1.6 hypothetical protein compare
PS417_10655 +0.4 1.1 LuxR family transcriptional regulator compare
PS417_28185 +0.4 1.4 homocysteine methyltransferase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Sorbitol in Pseudomonas simiae WCS417

For carbon source D-Sorbitol across organisms