Experiment set2IT091 for Variovorax sp. OAS795

Compare to:

Glucuronamide carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS09180 -4.6 -5.5 DNA polymerase I compare
ABID97_RS22620 -3.9 -9.5 response regulator transcription factor compare
ABID97_RS06345 -3.4 -4.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23225 -3.1 -16.3 glutamate synthase-related protein compare
ABID97_RS23485 -3.1 -2.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS22625 -3.0 -9.7 HAMP domain-containing sensor histidine kinase compare
ABID97_RS07610 -2.9 -1.5 response regulator transcription factor compare
ABID97_RS13860 -2.8 -6.9 hypothetical protein compare
ABID97_RS06575 -2.7 -5.5 trehalose-phosphatase compare
ABID97_RS28350 -2.7 -1.4 amidohydrolase family protein compare
ABID97_RS03680 -2.6 -6.5 lysophospholipid transporter LplT compare
ABID97_RS23645 -2.5 -2.2 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS12180 -2.4 -2.6 hypothetical protein compare
ABID97_RS28600 -2.4 -1.2 aspartate aminotransferase family protein compare
ABID97_RS10305 -2.4 -1.3 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS17270 -2.3 -5.1 ATP-binding protein compare
ABID97_RS05235 -2.3 -1.2 PA2169 family four-helix-bundle protein compare
ABID97_RS01565 -2.3 -7.8 DNA starvation/stationary phase protection protein compare
ABID97_RS00255 -2.2 -14.3 type IV pilus twitching motility protein PilT compare
ABID97_RS23425 -2.2 -1.7 tRNA-Pro compare
ABID97_RS25015 -2.2 -4.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS18505 -2.1 -1.3 transglutaminase family protein compare
ABID97_RS17590 -2.0 -11.7 endopeptidase La compare
ABID97_RS04500 -2.0 -1.9 HPr(Ser) kinase/phosphatase compare
ABID97_RS04480 -2.0 -2.7 magnesium/cobalt transporter CorA compare
ABID97_RS21150 -2.0 -6.8 FAD-dependent oxidoreductase compare
ABID97_RS10885 -2.0 -5.9 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS15665 -1.9 -7.0 [protein-PII] uridylyltransferase compare
ABID97_RS23430 -1.9 -7.8 type IV-A pilus assembly ATPase PilB compare
ABID97_RS06275 -1.9 -1.6 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS23435 -1.9 -10.4 type II secretion system F family protein compare
ABID97_RS01840 -1.9 -9.5 DUF1631 family protein compare
ABID97_RS13990 -1.9 -4.8 amino acid aminotransferase compare
ABID97_RS17265 -1.8 -3.5 two-component system response regulator OmpR compare
ABID97_RS05280 -1.8 -2.5 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS22375 -1.8 -1.9 OsmC family protein compare
ABID97_RS08435 -1.8 -2.0 phosphoribosylanthranilate isomerase compare
ABID97_RS02110 -1.8 -10.6 type IV pilus modification protein PilV compare
ABID97_RS02125 -1.8 -13.9 PilC/PilY family type IV pilus protein compare
ABID97_RS14975 -1.8 -2.7 hypothetical protein compare
ABID97_RS02135 -1.7 -4.3 GspH/FimT family pseudopilin compare
ABID97_RS23915 -1.7 -3.2 heme o synthase compare
ABID97_RS02120 -1.7 -7.4 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02140 -1.7 -6.9 sugar transferase compare
ABID97_RS17850 -1.7 -1.2 tetratricopeptide repeat protein compare
ABID97_RS02455 -1.7 -4.2 nucleotidyltransferase family protein compare
ABID97_RS02600 -1.7 -5.6 homoserine O-acetyltransferase compare
ABID97_RS09935 -1.7 -6.2 hypothetical protein compare
ABID97_RS02115 -1.7 -7.9 PilW family protein compare
ABID97_RS24170 -1.7 -3.4 ATP-binding protein compare
ABID97_RS26945 -1.7 -1.3 DUF3606 domain-containing protein compare
ABID97_RS23220 -1.7 -0.9 glutamate synthase subunit beta compare
ABID97_RS13750 -1.6 -1.0 hypothetical protein compare
ABID97_RS23265 -1.6 -7.5 type IV pilus secretin PilQ compare
ABID97_RS22705 -1.6 -8.9 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS08445 -1.6 -6.1 FimV/HubP family polar landmark protein compare
ABID97_RS05670 -1.6 -2.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS15995 -1.6 -6.4 PilZ domain-containing protein compare
ABID97_RS05250 -1.6 -6.2 anthranilate synthase component I compare
ABID97_RS05275 -1.6 -1.5 anthranilate phosphoribosyltransferase compare
ABID97_RS02460 -1.6 -10.3 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS22135 -1.6 -1.1 LysR family transcriptional regulator compare
ABID97_RS17970 -1.6 -4.0 protein TolQ compare
ABID97_RS02130 -1.6 -8.6 type IV pilin protein compare
ABID97_RS24705 -1.5 -4.2 response regulator compare
ABID97_RS02145 -1.5 -6.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS03915 -1.5 -4.3 DUF4124 domain-containing protein compare
ABID97_RS27720 -1.5 -1.5 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS12110 -1.4 -1.2 phosphoribosyltransferase family protein compare
ABID97_RS01195 -1.4 -0.9 2-hydroxyacid dehydrogenase compare
ABID97_RS08425 -1.4 -3.7 tryptophan synthase subunit alpha compare
ABID97_RS23650 -1.4 -9.2 serine/threonine-protein kinase compare
ABID97_RS24045 -1.4 -2.6 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS27780 -1.4 -1.2 efflux RND transporter periplasmic adaptor subunit compare
ABID97_RS23440 -1.4 -5.6 A24 family peptidase compare
ABID97_RS24690 -1.4 -6.4 methyl-accepting chemotaxis protein compare
ABID97_RS01825 -1.4 -9.7 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS15800 -1.4 -1.3 NAD(P)H-dependent oxidoreductase compare
ABID97_RS04685 -1.3 -1.5 LysR substrate-binding domain-containing protein compare
ABID97_RS20095 -1.3 -1.7 DNA topoisomerase IV subunit B compare
ABID97_RS29015 -1.3 -1.1 transcriptional regulator GcvA compare
ABID97_RS12140 -1.3 -7.8 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS17670 -1.3 -3.6 alpha/beta hydrolase compare
ABID97_RS15655 -1.3 -1.4 amino acid ABC transporter permease compare
ABID97_RS27085 -1.3 -0.9 DNA alkylation repair protein compare
ABID97_RS14625 -1.3 -3.4 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS23280 -1.2 -3.9 PilN domain-containing protein compare
ABID97_RS23775 -1.2 -5.5 ABC transporter permease compare
ABID97_RS02420 -1.2 -5.2 protealysin inhibitor emfourin compare
ABID97_RS23780 -1.2 -5.0 ABC transporter permease compare
ABID97_RS06175 -1.2 -8.8 STAS domain-containing protein compare
ABID97_RS26490 -1.2 -1.0 aspartate/glutamate racemase family protein compare
ABID97_RS23380 -1.2 -6.4 lytic transglycosylase domain-containing protein compare
ABID97_RS06315 -1.2 -7.4 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS05855 -1.2 -7.8 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABID97_RS12850 -1.2 -1.8 ribulose bisphosphate carboxylase small subunit compare
ABID97_RS07430 -1.2 -6.9 pantoate--beta-alanine ligase compare
ABID97_RS14160 -1.2 -3.7 cell division protein ZapE compare
ABID97_RS04505 -1.2 -1.3 ferric iron uptake transcriptional regulator compare
ABID97_RS23230 -1.2 -6.4 transposase compare
ABID97_RS23285 -1.1 -6.8 pilus assembly protein PilM compare
ABID97_RS07850 -1.1 -5.0 ABC transporter ATP-binding protein compare
ABID97_RS10365 -1.1 -4.8 5-dehydro-4-deoxyglucarate dehydratase compare
ABID97_RS28740 -1.1 -2.8 NADH:flavin oxidoreductase/NADH oxidase compare
ABID97_RS06460 -1.1 -1.5 sigma 54-interacting transcriptional regulator compare
ABID97_RS16600 -1.1 -4.6 CysB family HTH-type transcriptional regulator compare
ABID97_RS23270 -1.1 -5.8 pilus assembly protein PilP compare
ABID97_RS16535 -1.1 -4.4 arginine/lysine/ornithine decarboxylase compare
ABID97_RS08775 -1.1 -1.0 ribosome small subunit-dependent GTPase A compare
ABID97_RS16935 -1.1 -1.7 DUF192 domain-containing protein compare
ABID97_RS08220 -1.1 -5.7 phosphoenolpyruvate carboxylase compare
ABID97_RS22785 -1.1 -1.3 1,2-phenylacetyl-CoA epoxidase subunit PaaA compare
ABID97_RS15175 -1.1 -1.7 phage tail protein I compare
ABID97_RS23360 -1.1 -0.8 hypothetical protein compare
ABID97_RS22540 -1.1 -4.6 MFS transporter compare
ABID97_RS16155 -1.1 -0.9 universal stress protein compare
ABID97_RS06415 -1.1 -5.8 sigma-54 dependent transcriptional regulator compare
ABID97_RS10705 -1.1 -2.3 H-NS histone family protein compare
ABID97_RS05260 -1.1 -1.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS16985 -1.1 -1.7 transcriptional repressor LexA compare
ABID97_RS23275 -1.1 -6.2 type 4a pilus biogenesis protein PilO compare
ABID97_RS27865 -1.1 -1.3 alpha/beta hydrolase family protein compare
ABID97_RS09610 -1.1 -1.3 Cro/CI family transcriptional regulator compare
ABID97_RS17225 -1.1 -5.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS07405 -1.1 -5.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS09565 -1.1 -1.5 hypothetical protein compare
ABID97_RS19555 -1.0 -1.3 response regulator transcription factor compare
ABID97_RS06520 -1.0 -1.7 SAM-dependent methyltransferase compare
ABID97_RS08195 -1.0 -2.7 histidine kinase compare
ABID97_RS06450 -1.0 -2.1 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS27630 -1.0 -1.7 AraC family transcriptional regulator compare
ABID97_RS17055 -1.0 -2.4 YhbY family RNA-binding protein compare
ABID97_RS26795 -1.0 -1.4 ANTAR domain-containing protein compare
ABID97_RS05765 -1.0 -2.2 UDP-glucose 4-epimerase GalE compare
ABID97_RS07355 -1.0 -6.6 CHASE3 domain-containing protein compare
ABID97_RS06765 -1.0 -2.0 GNAT family N-acetyltransferase compare
ABID97_RS13870 -1.0 -3.3 hypothetical protein compare
ABID97_RS25695 -1.0 -1.3 cupin domain-containing protein compare
ABID97_RS09595 -1.0 -2.3 Arc family DNA-binding protein compare
ABID97_RS04935 -1.0 -5.1 catalase HPII compare
ABID97_RS05810 -1.0 -2.9 TRAP transporter small permease compare
ABID97_RS29485 -1.0 -1.2 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS08440 -1.0 -2.8 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS03125 -1.0 -5.3 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS12155 -1.0 -5.0 glycogen debranching protein GlgX compare
ABID97_RS15570 -1.0 -3.9 sulfate ABC transporter substrate-binding protein compare
ABID97_RS06920 -1.0 -1.9 7-cyano-7-deazaguanine synthase QueC compare
ABID97_RS21205 -1.0 -4.2 IlvD/Edd family dehydratase compare
ABID97_RS17640 -1.0 -1.1 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS14090 -0.9 -0.9 response regulator transcription factor compare
ABID97_RS20405 -0.9 -2.6 MarR family transcriptional regulator compare
ABID97_RS11355 -0.9 -1.3 acyl-CoA dehydrogenase family protein compare
ABID97_RS28435 -0.9 -1.9 OB-fold domain-containing protein compare
ABID97_RS19695 -0.9 -0.7 alpha/beta fold hydrolase compare
ABID97_RS29050 -0.9 -1.6 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS23790 -0.9 -2.3 ATP-binding cassette domain-containing protein compare
ABID97_RS02200 -0.9 -7.4 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS16785 -0.9 -1.7 transporter compare
ABID97_RS08430 -0.9 -1.5 tryptophan synthase subunit beta compare
ABID97_RS13465 -0.9 -1.5 VOC family protein compare
ABID97_RS26640 -0.9 -2.4 hypothetical protein compare
ABID97_RS06095 -0.9 -5.2 MBL fold metallo-hydrolase compare
ABID97_RS20375 -0.9 -1.6 ABC transporter substrate-binding protein compare
ABID97_RS04385 -0.9 -2.6 hypothetical protein compare
ABID97_RS18580 -0.9 -1.1 CoA transferase compare
ABID97_RS19550 -0.9 -0.8 phosphatase PAP2 family protein compare
ABID97_RS07970 -0.9 -1.7 hypothetical protein compare
ABID97_RS16315 -0.9 -2.8 hypothetical protein compare
ABID97_RS16470 -0.9 -1.0 translational GTPase TypA compare
ABID97_RS19410 -0.9 -1.6 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS24730 -0.9 -1.5 Fis family transcriptional regulator compare
ABID97_RS15695 -0.9 -2.7 peptide-methionine (R)-S-oxide reductase MsrB compare
ABID97_RS23970 -0.9 -4.8 DUF2244 domain-containing protein compare
ABID97_RS12120 -0.9 -1.5 Hsp20/alpha crystallin family protein compare
ABID97_RS21950 -0.9 -1.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABID97_RS29335 -0.9 -1.6 glycosyltransferase family 4 protein compare
ABID97_RS29135 -0.8 -1.2 acyl-CoA dehydrogenase family protein compare
ABID97_RS26375 -0.8 -1.1 LysR substrate-binding domain-containing protein compare
ABID97_RS13430 -0.8 -1.5 3-keto-5-aminohexanoate cleavage protein compare
ABID97_RS26550 -0.8 -2.1 NADP-dependent malic enzyme compare
ABID97_RS18745 -0.8 -1.0 quinone oxidoreductase compare
ABID97_RS13010 -0.8 -1.0 DotU family type IV/VI secretion system protein compare
ABID97_RS09620 -0.8 -1.8 hypothetical protein compare
ABID97_RS27010 -0.8 -1.6 DNA-binding domain-containing protein compare
ABID97_RS10565 -0.8 -2.2 phasin family protein compare
ABID97_RS16695 -0.8 -5.4 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS06970 -0.8 -1.9 type II secretion system minor pseudopilin GspK compare
ABID97_RS01755 -0.8 -5.4 pyruvate kinase compare
ABID97_RS07840 -0.8 -3.8 branched-chain amino acid ABC transporter permease compare
ABID97_RS23815 -0.8 -1.7 4-oxalocrotonate tautomerase family protein compare
ABID97_RS25100 -0.8 -4.9 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS07365 -0.8 -1.2 response regulator compare
ABID97_RS10745 -0.8 -1.5 heme-binding protein compare
ABID97_RS08390 -0.8 -4.0 beta-N-acetylhexosaminidase compare
ABID97_RS06160 -0.8 -3.0 GTP-binding protein compare
ABID97_RS08200 -0.8 -3.7 LytTR family DNA-binding domain-containing protein compare
ABID97_RS05125 -0.8 -1.9 DUF2169 domain-containing protein compare
ABID97_RS11050 -0.8 -1.5 crosslink repair DNA glycosylase YcaQ family protein compare
ABID97_RS02510 -0.8 -6.8 NADP-dependent malic enzyme compare
ABID97_RS23910 -0.8 -3.7 SCO family protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glucuronamide in Variovorax sp. OAS795

For carbon source Glucuronamide across organisms