Experiment set2IT090 for Variovorax sp. OAS795

Compare to:

Adenine hydrochloride hydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS06575 -6.5 -6.3 trehalose-phosphatase compare
ABID97_RS23225 -5.7 -17.6 glutamate synthase-related protein compare
ABID97_RS01565 -5.2 -12.5 DNA starvation/stationary phase protection protein compare
ABID97_RS22210 -5.0 -12.0 allantoinase PuuE compare
ABID97_RS22215 -4.9 -7.8 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
ABID97_RS22200 -4.8 -7.4 hydroxyisourate hydrolase compare
ABID97_RS17590 -4.5 -13.7 endopeptidase La compare
ABID97_RS09180 -4.5 -4.4 DNA polymerase I compare
ABID97_RS14755 -4.4 -9.1 'GTP 3',8-cyclase MoaA' pseudo=_no_value transl_table=11 compare
ABID97_RS17600 -4.1 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS22320 -4.1 -8.2 glyoxylate carboligase compare
ABID97_RS02100 -4.1 -5.3 cyclic pyranopterin monophosphate synthase MoaC compare
ABID97_RS13990 -4.0 -3.9 amino acid aminotransferase compare
ABID97_RS22220 -4.0 -6.0 ArgE/DapE family deacylase compare
ABID97_RS23220 -4.0 -2.2 glutamate synthase subunit beta compare
ABID97_RS00585 -3.7 -13.6 TlpA disulfide reductase family protein compare
ABID97_RS23325 -3.7 -7.5 cytochrome c biogenesis protein ResB compare
ABID97_RS10920 -3.7 -2.0 molybdenum cofactor biosynthesis protein MoaE compare
ABID97_RS25015 -3.7 -5.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS22120 -3.6 -13.3 xanthine dehydrogenase molybdopterin binding subunit compare
ABID97_RS10905 -3.6 -4.8 gephyrin-like molybdotransferase Glp compare
ABID97_RS05280 -3.6 -2.4 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS10885 -3.5 -6.6 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS22315 -3.5 -2.0 LysR family transcriptional regulator compare
ABID97_RS23320 -3.5 -8.3 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS02600 -3.4 -6.1 homoserine O-acetyltransferase compare
ABID97_RS23425 -3.3 -2.9 tRNA-Pro compare
ABID97_RS10910 -3.3 -3.7 MoaD/ThiS family protein compare
ABID97_RS05250 -3.2 -9.6 anthranilate synthase component I compare
ABID97_RS03800 -3.2 -2.2 O-antigen ligase family protein compare
ABID97_RS16595 -3.1 -6.7 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS22115 -3.1 -9.5 LysR family transcriptional regulator compare
ABID97_RS20425 -3.1 -2.9 DUF2818 family protein compare
ABID97_RS02420 -3.1 -8.8 protealysin inhibitor emfourin compare
ABID97_RS07920 -3.0 -4.6 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABID97_RS04505 -3.0 -2.7 ferric iron uptake transcriptional regulator compare
ABID97_RS18495 -3.0 -1.7 DUF2889 domain-containing protein compare
ABID97_RS22125 -2.9 -9.9 xanthine dehydrogenase small subunit compare
ABID97_RS14095 -2.9 -9.1 PAS domain S-box protein compare
ABID97_RS20705 -2.9 -6.2 molybdopterin adenylyltransferase compare
ABID97_RS24920 -2.8 -2.0 Holliday junction branch migration protein RuvA compare
ABID97_RS10590 -2.8 -10.7 nicotinate phosphoribosyltransferase compare
ABID97_RS07375 -2.8 -8.2 molybdopterin-synthase adenylyltransferase MoeB compare
ABID97_RS21150 -2.8 -7.5 FAD-dependent oxidoreductase compare
ABID97_RS20615 -2.8 -8.5 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS16600 -2.7 -7.2 CysB family HTH-type transcriptional regulator compare
ABID97_RS17850 -2.7 -1.3 tetratricopeptide repeat protein compare
ABID97_RS15665 -2.7 -5.9 [protein-PII] uridylyltransferase compare
ABID97_RS08425 -2.6 -4.3 tryptophan synthase subunit alpha compare
ABID97_RS08445 -2.6 -10.5 FimV/HubP family polar landmark protein compare
ABID97_RS03910 -2.6 -1.8 orotate phosphoribosyltransferase compare
ABID97_RS22185 -2.6 -11.9 urate hydroxylase PuuD compare
ABID97_RS08480 -2.6 -1.8 citrate synthase compare
ABID97_RS01590 -2.5 -6.5 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABID97_RS04855 -2.5 -2.9 CinA family protein compare
ABID97_RS08435 -2.5 -2.4 phosphoribosylanthranilate isomerase compare
ABID97_RS13245 -2.5 -1.4 XRE family transcriptional regulator compare
ABID97_RS25085 -2.5 -3.9 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS08440 -2.5 -5.2 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS06275 -2.4 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS05750 -2.3 -3.1 glycosyltransferase compare
ABID97_RS13860 -2.3 -5.9 hypothetical protein compare
ABID97_RS01650 -2.2 -1.5 orotidine-5'-phosphate decarboxylase compare
ABID97_RS07380 -2.2 -4.7 S41 family peptidase compare
ABID97_RS08430 -2.1 -2.0 tryptophan synthase subunit beta compare
ABID97_RS05260 -2.1 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS06450 -2.1 -2.8 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS25525 -2.1 -4.0 LacI family DNA-binding transcriptional regulator compare
ABID97_RS27290 -2.0 -1.5 methyltransferase domain-containing protein compare
ABID97_RS07530 -2.0 -7.4 molybdate ABC transporter substrate-binding protein compare
ABID97_RS05765 -2.0 -3.3 UDP-glucose 4-epimerase GalE compare
ABID97_RS20205 -2.0 -6.0 nicotinamide riboside transporter PnuC compare
ABID97_RS08710 -2.0 -6.4 polynucleotide adenylyltransferase PcnB compare
ABID97_RS07500 -2.0 -2.6 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS20610 -1.9 -6.2 DNA-binding protein YbiB compare
ABID97_RS23455 -1.9 -3.6 hypothetical protein compare
ABID97_RS03640 -1.9 -3.6 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS07535 -1.9 -10.9 ATP-binding cassette domain-containing protein compare
ABID97_RS15375 -1.9 -4.1 DUF934 domain-containing protein compare
ABID97_RS07525 -1.9 -7.4 molybdate ABC transporter permease subunit compare
ABID97_RS04500 -1.9 -1.8 HPr(Ser) kinase/phosphatase compare
ABID97_RS16910 -1.8 -10.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS08220 -1.8 -8.0 phosphoenolpyruvate carboxylase compare
ABID97_RS16915 -1.8 -7.1 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS19375 -1.8 -3.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS00255 -1.8 -10.6 type IV pilus twitching motility protein PilT compare
ABID97_RS02460 -1.8 -10.4 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS02455 -1.8 -3.7 nucleotidyltransferase family protein compare
ABID97_RS07430 -1.8 -7.5 pantoate--beta-alanine ligase compare
ABID97_RS03720 -1.8 -1.5 4-hydroxy-2-oxoheptanedioate aldolase compare
ABID97_RS07415 -1.8 -10.3 quinolinate synthase NadA compare
ABID97_RS06460 -1.8 -1.7 sigma 54-interacting transcriptional regulator compare
ABID97_RS23230 -1.8 -8.8 transposase compare
ABID97_RS06920 -1.8 -2.6 7-cyano-7-deazaguanine synthase QueC compare
ABID97_RS15995 -1.8 -6.5 PilZ domain-containing protein compare
ABID97_RS20095 -1.8 -2.4 DNA topoisomerase IV subunit B compare
ABID97_RS02125 -1.7 -13.2 PilC/PilY family type IV pilus protein compare
ABID97_RS02110 -1.7 -9.7 type IV pilus modification protein PilV compare
ABID97_RS08215 -1.7 -1.7 hypothetical protein compare
ABID97_RS02135 -1.7 -6.3 GspH/FimT family pseudopilin compare
ABID97_RS10705 -1.7 -3.4 H-NS histone family protein compare
ABID97_RS13560 -1.7 -1.4 ATP-binding cassette domain-containing protein compare
ABID97_RS01840 -1.7 -9.2 DUF1631 family protein compare
ABID97_RS14925 -1.6 -6.8 arginyltransferase compare
ABID97_RS15380 -1.6 -7.6 nitrite/sulfite reductase compare
ABID97_RS23435 -1.6 -8.8 type II secretion system F family protein compare
ABID97_RS07440 -1.6 -8.1 L-aspartate oxidase compare
ABID97_RS16690 -1.6 -4.7 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS17970 -1.6 -6.3 protein TolQ compare
ABID97_RS22110 -1.6 -5.7 NCS2 family permease compare
ABID97_RS15360 -1.5 -3.8 GTP-binding protein compare
ABID97_RS02120 -1.5 -6.9 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS06345 -1.5 -3.2 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS28635 -1.5 -3.7 IclR family transcriptional regulator compare
ABID97_RS05670 -1.5 -2.0 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS10385 -1.5 -1.9 MFS transporter compare
ABID97_RS10295 -1.5 -1.7 winged helix-turn-helix transcriptional regulator compare
ABID97_RS16695 -1.5 -9.4 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS14115 -1.5 -3.7 dihydrolipoyl dehydrogenase compare
ABID97_RS08360 -1.5 -4.6 DUF4845 domain-containing protein compare
ABID97_RS12020 -1.4 -1.5 polysaccharide pyruvyl transferase family protein compare
ABID97_RS16535 -1.4 -6.0 arginine/lysine/ornithine decarboxylase compare
ABID97_RS02140 -1.4 -7.4 sugar transferase compare
ABID97_RS07410 -1.4 -4.4 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS23650 -1.4 -10.4 serine/threonine-protein kinase compare
ABID97_RS18255 -1.4 -1.5 hypothetical protein compare
ABID97_RS17200 -1.4 -10.7 ribonuclease R compare
ABID97_RS23430 -1.4 -7.5 type IV-A pilus assembly ATPase PilB compare
ABID97_RS05275 -1.4 -1.3 anthranilate phosphoribosyltransferase compare
ABID97_RS20210 -1.4 -3.4 ATP-binding protein compare
ABID97_RS01755 -1.4 -7.4 pyruvate kinase compare
ABID97_RS05755 -1.4 -2.3 glycosyltransferase compare
ABID97_RS10695 -1.4 -7.0 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS09595 -1.4 -1.8 Arc family DNA-binding protein compare
ABID97_RS11640 -1.4 -6.5 TetR family transcriptional regulator compare
ABID97_RS13775 -1.4 -1.3 hypothetical protein compare
ABID97_RS17270 -1.4 -4.5 ATP-binding protein compare
ABID97_RS04960 -1.3 -0.9 ATP-binding protein compare
ABID97_RS02130 -1.3 -7.0 type IV pilin protein compare
ABID97_RS01825 -1.3 -8.5 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS16985 -1.3 -2.8 transcriptional repressor LexA compare
ABID97_RS23440 -1.3 -8.1 A24 family peptidase compare
ABID97_RS02910 -1.3 -5.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABID97_RS00340 -1.3 -7.2 DUF2946 family protein compare
ABID97_RS16450 -1.3 -6.1 anti-sigma factor compare
ABID97_RS14745 -1.3 -4.2 gephyrin-like molybdotransferase Glp compare
ABID97_RS27720 -1.3 -1.3 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS15370 -1.3 -7.4 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS24040 -1.3 -1.7 MarR family transcriptional regulator compare
ABID97_RS03915 -1.3 -3.6 DUF4124 domain-containing protein compare
ABID97_RS23450 -1.3 -4.0 MBOAT family protein compare
ABID97_RS14200 -1.3 -5.4 pseudouridine synthase compare
ABID97_RS27665 -1.2 -2.1 LysR family transcriptional regulator compare
ABID97_RS17265 -1.2 -2.4 two-component system response regulator OmpR compare
ABID97_RS23525 -1.2 -1.5 urease subunit beta compare
ABID97_RS02115 -1.2 -5.2 PilW family protein compare
ABID97_RS22860 -1.2 -1.7 MurR/RpiR family transcriptional regulator compare
ABID97_RS23380 -1.2 -6.3 lytic transglycosylase domain-containing protein compare
ABID97_RS10720 -1.2 -3.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS09935 -1.2 -3.8 hypothetical protein compare
ABID97_RS10685 -1.2 -4.2 hypothetical protein compare
ABID97_RS16785 -1.2 -1.5 transporter compare
ABID97_RS06175 -1.2 -7.8 STAS domain-containing protein compare
ABID97_RS22330 -1.2 -1.1 2-hydroxy-3-oxopropionate reductase compare
ABID97_RS27795 -1.1 -0.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS27525 -1.1 -1.8 PadR family transcriptional regulator compare
ABID97_RS03805 -1.1 -1.3 ATP-binding protein compare
ABID97_RS28990 -1.1 -3.5 aspartate 1-decarboxylase compare
ABID97_RS23265 -1.1 -3.9 type IV pilus secretin PilQ compare
ABID97_RS27195 -1.1 -1.2 hypothetical protein compare
ABID97_RS17605 -1.1 -4.1 trigger factor compare
ABID97_RS06415 -1.1 -6.7 sigma-54 dependent transcriptional regulator compare
ABID97_RS14975 -1.1 -3.0 hypothetical protein compare
ABID97_RS15695 -1.1 -3.9 peptide-methionine (R)-S-oxide reductase MsrB compare
ABID97_RS25100 -1.1 -4.6 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS20265 -1.1 -2.5 site-specific tyrosine recombinase XerD compare
ABID97_RS18635 -1.1 -1.2 enoyl-CoA hydratase-related protein compare
ABID97_RS24705 -1.1 -2.7 response regulator compare
ABID97_RS23935 -1.1 -1.3 twin transmembrane helix small protein compare
ABID97_RS22050 -1.1 -6.6 BMP family ABC transporter substrate-binding protein compare
ABID97_RS22705 -1.1 -5.2 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS08250 -1.0 -5.4 RluA family pseudouridine synthase compare
ABID97_RS15365 -1.0 -3.4 sulfate adenylyltransferase subunit CysD compare
ABID97_RS10690 -1.0 -4.5 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS02200 -1.0 -8.3 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS24170 -1.0 -3.5 ATP-binding protein compare
ABID97_RS07855 -1.0 -1.8 ABC transporter ATP-binding protein compare
ABID97_RS07405 -1.0 -6.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS22105 -1.0 -2.5 ABC transporter ATP-binding protein compare
ABID97_RS13865 -1.0 -3.2 hypothetical protein compare
ABID97_RS07180 -1.0 -6.2 Grx4 family monothiol glutaredoxin compare
ABID97_RS08775 -1.0 -1.4 ribosome small subunit-dependent GTPase A compare
ABID97_RS23285 -1.0 -6.8 pilus assembly protein PilM compare
ABID97_RS14850 -1.0 -3.1 P-II family nitrogen regulator compare
ABID97_RS02145 -1.0 -5.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS17945 -1.0 -2.0 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABID97_RS14625 -1.0 -4.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS08195 -1.0 -4.7 histidine kinase compare
ABID97_RS12025 -1.0 -2.1 OBAP family protein compare
ABID97_RS16315 -0.9 -2.5 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Adenine hydrochloride hydrate in Variovorax sp. OAS795

For carbon source Adenine hydrochloride hydrate across organisms