Experiment set2IT089 for Pseudomonas simiae WCS417

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -5.8 -5.3 isopropylmalate isomerase compare
PS417_27040 -5.5 -5.3 3-phosphoglycerate dehydrogenase compare
PS417_23805 -5.3 -5.9 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -5.2 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_18560 -5.2 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -5.1 -11.9 ketol-acid reductoisomerase compare
PS417_17420 -5.1 -12.7 ethanol oxidation regulatory protein ercA (from data) conserved
PS417_23545 -5.0 -3.5 gamma-glutamyl kinase compare
PS417_25720 -4.8 -10.4 anthranilate synthase component II compare
PS417_04415 -4.7 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_04420 -4.7 -12.0 histidinol dehydrogenase compare
PS417_01575 -4.6 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_06375 -4.6 -1.9 deoxycytidine triphosphate deaminase compare
PS417_00180 -4.4 -3.0 tryptophan synthase subunit alpha compare
PS417_18585 -4.3 -8.2 3-isopropylmalate dehydrogenase compare
PS417_26740 -4.3 -13.2 homoserine acetyltransferase compare
PS417_17415 -4.2 -6.0 histidine kinase compare
PS417_24745 -4.1 -5.6 gamma-glutamyl phosphate reductase compare
PS417_25725 -4.1 -13.9 anthranilate synthase component I compare
PS417_18530 -4.1 -8.3 O-succinylhomoserine sulfhydrylase compare
PS417_02510 -4.0 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -4.0 -12.3 acetolactate synthase 3 catalytic subunit compare
PS417_21750 -3.9 -17.4 acetyl-CoA synthetase compare
PS417_17490 -3.9 -4.5 ABC transporter ATP-binding protein compare
PS417_26745 -3.8 -6.3 methionine biosynthesis protein MetW compare
PS417_25710 -3.8 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_16570 -3.8 -9.3 isocitrate lyase compare
PS417_05595 -3.7 -12.4 ornithine carbamoyltransferase compare
PS417_12855 -3.7 -6.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01565 -3.6 -5.0 imidazole glycerol phosphate synthase compare
PS417_12290 -3.6 -9.6 sulfite reductase compare
PS417_07640 -3.6 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_16465 -3.6 -13.2 sirohydrochlorin ferrochelatase compare
PS417_00185 -3.5 -5.8 tryptophan synthase subunit beta compare
PS417_02005 -3.5 -12.7 glutamate synthase compare
PS417_24155 -3.4 -4.0 ATP-binding protein compare
PS417_26040 -3.4 -5.0 malate synthase compare
PS417_23110 -3.4 -8.8 2-isopropylmalate synthase compare
PS417_18595 -3.3 -2.6 3-isopropylmalate dehydratase compare
PS417_27795 -3.2 -1.9 orotate phosphoribosyltransferase compare
PS417_01605 -3.2 -3.0 phosphoglycerate mutase compare
PS417_08125 -3.0 -1.8 prephenate dehydratase compare
PS417_25715 -3.0 -5.7 anthranilate phosphoribosyltransferase compare
PS417_21035 -3.0 -14.3 multidrug transporter compare
PS417_26730 -3.0 -1.8 pyrroline-5-carboxylate reductase compare
PS417_26890 -3.0 -5.9 dihydroxy-acid dehydratase compare
PS417_17425 -2.9 -6.5 hypothetical protein compare
PS417_25930 -2.9 -10.0 pyrroloquinoline quinone biosynthesis protein PqqC conserved
PS417_02000 -2.8 -12.9 glutamate synthase compare
PS417_25940 -2.8 -12.0 pyrroloquinoline quinone biosynthesis protein PqqE conserved
PS417_01850 -2.8 -8.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_17485 -2.8 -7.5 membrane protein conserved
PS417_02415 -2.7 -5.5 phosphoserine phosphatase compare
PS417_27195 -2.6 -2.7 N-acetylglutamate synthase compare
PS417_17495 -2.6 -7.9 multidrug ABC transporter permease conserved
PS417_25920 -2.5 -13.1 pyrroloquinoline quinone biosynthesis protein PqqF conserved
PS417_01580 -2.5 -2.5 imidazole glycerol phosphate synthase compare
PS417_17435 -2.4 -9.5 dehydrogenase conserved
PS417_17480 -2.3 -5.9 branched-chain amino acid ABC transporter substrate-binding protein conserved
PS417_17460 -2.3 -12.7 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) conserved
PS417_08220 -2.2 -1.6 epimerase compare
PS417_17455 -2.2 -2.7 cytochrome C compare
PS417_23995 -2.2 -1.2 preprotein translocase subunit SecG compare
PS417_17450 -2.1 -5.0 amino acid ABC transporter substrate-binding protein conserved
PS417_20125 -2.1 -4.8 phosphoribosylglycinamide formyltransferase compare
PS417_23775 -2.1 -3.7 exodeoxyribonuclease V subunit beta compare
PS417_20985 -2.1 -3.3 porin compare
PS417_27435 -2.0 -7.8 polyphosphate kinase compare
PS417_17505 -2.0 -2.1 LuxR family transcriptional regulator compare
PS417_20610 -1.9 -1.9 hypothetical protein compare
PS417_01570 -1.8 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20665 -1.8 -8.8 hypothetical protein compare
PS417_24835 -1.7 -5.7 hypothetical protein compare
PS417_17475 -1.7 -9.5 histidine kinase conserved
PS417_04380 -1.7 -2.0 ABC transporter permease compare
PS417_23770 -1.7 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_20160 -1.6 -3.9 cysteine synthase compare
PS417_08230 -1.6 -2.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01560 -1.6 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_03925 -1.6 -7.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_04860 -1.6 -6.2 ATPase compare
PS417_17470 -1.5 -2.8 LuxR family transcriptional regulator compare
PS417_24765 -1.5 -3.5 membrane protein compare
PS417_05840 -1.5 -2.6 LuxR family transcriptional regulator compare
PS417_12310 -1.5 -9.0 methionine synthase compare
PS417_01710 -1.5 -6.2 histidine utilization repressor compare
PS417_20635 -1.5 -1.4 ABC transporter ATP-binding protein compare
PS417_26995 -1.5 -7.7 phosphoserine phosphatase compare
PS417_08225 -1.4 -4.2 acetolactate synthase compare
PS417_08245 -1.4 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27005 -1.4 -1.5 membrane protein compare
PS417_07985 -1.3 -1.7 AbrB family transcriptional regulator compare
PS417_22385 -1.3 -8.6 quinolinate synthase A compare
PS417_24840 -1.3 -2.6 hypothetical protein compare
PS417_22520 -1.3 -2.7 histidine kinase compare
PS417_26510 -1.2 -7.1 5,10-methylenetetrahydrofolate reductase compare
PS417_27035 -1.2 -3.5 FAD-linked oxidase compare
PS417_16490 -1.2 -2.0 cell division protein FtsK compare
PS417_19965 -1.1 -7.4 histidine kinase compare
PS417_23105 -1.1 -1.4 hypothetical protein compare
PS417_10535 -1.1 -5.1 hypothetical protein compare
PS417_23900 -1.1 -6.0 poly(A) polymerase compare
PS417_09325 -1.1 -4.3 peptidase S41 compare
PS417_11925 -1.1 -2.4 hypothetical protein compare
PS417_22445 -1.1 -3.7 ATP-dependent DNA helicase RuvB compare
PS417_23950 -1.0 -3.6 polynucleotide phosphorylase/polyadenylase compare
PS417_27305 -1.0 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_17645 -1.0 -1.3 RND transporter compare
PS417_19425 -1.0 -1.1 allantoicase compare
PS417_25390 -1.0 -4.3 MFS transporter compare
PS417_17945 -1.0 -1.1 hypothetical protein compare
PS417_14200 -1.0 -2.3 hypothetical protein compare
PS417_04180 -1.0 -3.7 GntR family transcriptional regulator compare
PS417_26990 -1.0 -1.2 RNA pyrophosphohydrolase compare
PS417_24135 -1.0 -2.0 hypothetical protein compare
PS417_25765 -1.0 -2.0 transcriptional regulator compare
PS417_16065 -1.0 -2.4 3-phytase compare
PS417_18025 -1.0 -3.1 cytochrome C compare
PS417_08195 -1.0 -5.4 hypothetical protein compare
PS417_02365 -0.9 -2.0 hypothetical protein compare
PS417_01095 -0.9 -1.8 amino acid ABC transporter ATP-binding protein compare
PS417_08155 -0.9 -2.1 integration host factor subunit beta compare
PS417_28510 -0.9 -3.8 chromosome partitioning protein compare
PS417_14940 -0.9 -1.9 LysR family transcriptional regulator compare
PS417_06945 -0.9 -1.5 membrane protein compare
PS417_06600 -0.9 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_26985 -0.9 -2.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21510 -0.9 -1.3 histidine kinase compare
PS417_27875 -0.9 -4.5 histidine kinase compare
PS417_27010 -0.9 -5.6 threonine dehydratase compare
PS417_08200 -0.9 -2.1 hypothetical protein compare
PS417_20030 -0.8 -2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_01915 -0.8 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_28030 -0.8 -2.5 hypothetical protein compare
PS417_08205 -0.8 -2.2 acetyltransferase compare
PS417_05025 -0.8 -1.3 maleylacetoacetate isomerase compare
PS417_15750 -0.8 -1.9 protease compare
PS417_15030 -0.8 -1.1 short-chain dehydrogenase compare
PS417_07995 -0.8 -3.2 LOG family protein compare
PS417_16510 -0.8 -2.2 Clp protease ClpX compare
PS417_24810 -0.8 -5.7 aldehyde dehydrogenase compare
PS417_21705 -0.8 -3.3 arginine N-succinyltransferase compare
PS417_08320 -0.8 -1.8 metal-chelation protein CHAD compare
PS417_26240 -0.8 -1.4 N-methylproline demethylase compare
PS417_10245 -0.8 -1.2 hypothetical protein compare
PS417_16515 -0.8 -1.7 Clp protease ClpS compare
PS417_05570 -0.8 -3.2 DeoR faimly transcriptional regulator compare
PS417_28050 -0.8 -3.2 hypothetical protein compare
PS417_11845 -0.7 -2.7 RpiR family transcriptional regulator compare
PS417_19335 -0.7 -1.3 isochorismatase compare
PS417_12355 -0.7 -2.0 magnesium chelatase compare
PS417_21030 -0.7 -4.4 GntR family transcriptional regulator compare
PS417_27315 -0.7 -0.9 hypothetical protein compare
PS417_20535 -0.7 -4.9 peptidylprolyl isomerase compare
PS417_26645 -0.7 -1.5 chemotaxis protein compare
PS417_22500 -0.7 -5.5 porin compare
PS417_20520 -0.7 -1.6 3-phosphoglycerate kinase compare
PS417_01950 -0.7 -2.8 malate dehydrogenase compare
PS417_05985 -0.7 -2.8 chemotaxis protein CheY compare
PS417_17500 -0.7 -1.6 sulfurtransferase compare
PS417_18885 -0.7 -1.8 GntR family transcriptional regulator compare
PS417_14515 -0.7 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_13800 -0.7 -1.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13510 -0.7 -1.0 polyketide cyclase compare
PS417_14075 -0.7 -1.8 hypothetical protein compare
PS417_21700 -0.7 -3.0 arginine N-succinyltransferase compare
PS417_28325 -0.7 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_14655 -0.7 -1.0 lysine transporter LysE compare
PS417_02980 -0.7 -0.9 chemotaxis protein compare
PS417_19605 -0.7 -1.1 hypothetical protein compare
PS417_28515 -0.7 -2.0 16S rRNA methyltransferase compare
PS417_13255 -0.7 -1.7 ABC transporter compare
PS417_18205 -0.6 -1.3 aldehyde dehydrogenase compare
PS417_19135 -0.6 -1.2 DeoR faimly transcriptional regulator compare
PS417_04865 -0.6 -1.3 molybdenum cofactor biosynthesis protein MoaC compare
PS417_10010 -0.6 -2.0 Replication protein P compare
PS417_21480 -0.6 -1.1 23S rRNA pseudouridylate synthase compare
PS417_22875 -0.6 -1.5 hypothetical protein compare
PS417_15725 -0.6 -2.7 nitrate/nitrite transporter NarK compare
PS417_21845 -0.6 -1.2 membrane protein compare
PS417_23575 -0.6 -1.7 hypothetical protein compare
PS417_04595 -0.6 -1.9 cell division protein MraZ compare
PS417_08130 -0.6 -1.0 aspartate aminotransferase compare
PS417_17565 -0.6 -2.0 branched-chain amino acid aminotransferase compare
PS417_13185 -0.6 -1.3 RND transporter compare
PS417_21210 -0.6 -1.5 amidotransferase compare
PS417_23405 -0.6 -2.2 transcriptional regulator compare
PS417_23095 -0.6 -0.8 exodeoxyribonuclease compare
PS417_07010 -0.6 -2.1 pseudouridine synthase compare
PS417_25895 -0.6 -1.5 glyoxalase compare
PS417_26220 -0.6 -1.9 Rieske (2Fe-2S) protein compare
PS417_04985 -0.6 -1.7 ketosteroid isomerase compare
PS417_24230 -0.6 -4.2 ATP-dependent protease compare
PS417_22350 -0.6 -1.4 Fis family transcriptional regulator compare
PS417_08860 -0.6 -2.6 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_26835 -0.6 -1.7 3-mercaptopyruvate sulfurtransferase compare
PS417_10740 -0.6 -1.9 hypothetical protein compare
PS417_15445 -0.6 -2.1 ABC transporter permease compare
PS417_04800 -0.6 -1.5 alginate O-acetyltransferase compare
PS417_20825 -0.6 -1.2 drug:proton antiporter compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Ethanol in Pseudomonas simiae WCS417

For carbon source Ethanol across organisms