Experiment set2IT089 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with benzoic acid 0.4 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_21335 +1.3 1.4 hypothetical protein compare
CA264_00565 +1.2 1.9 hypothetical protein compare
CA264_20925 +1.1 1.3 hypothetical protein compare
CA264_13340 +1.1 2.2 iron-sulfur cluster assembly accessory protein compare
CA264_15165 +0.9 3.9 flagellar motor protein MotA compare
CA264_01385 +0.9 5.6 iron ABC transporter substrate-binding protein compare
CA264_21050 +0.9 2.3 hypothetical protein compare
CA264_10920 +0.9 6.0 helix-turn-helix-type transcriptional regulator compare
CA264_03390 +0.8 2.7 hypothetical protein compare
CA264_06285 +0.8 1.8 N-acetyltransferase compare
CA264_21445 +0.8 2.0 metal transporter compare
CA264_00170 +0.8 3.0 ATP:cob(I)alamin adenosyltransferase compare
CA264_09740 +0.8 2.9 hypothetical protein compare
CA264_11655 +0.8 1.2 hypothetical protein compare
CA264_19685 +0.8 0.8 DNA-binding response regulator compare
CA264_13480 +0.8 2.3 hypothetical protein compare
CA264_15115 +0.8 0.8 hypothetical protein compare
CA264_10950 +0.7 2.6 phenylacetate-CoA oxygenase subunit PaaI compare
CA264_08945 +0.7 3.1 type 1 glutamine amidotransferase domain-containing protein compare
CA264_19150 +0.7 4.8 TonB dependent receptor compare
CA264_06355 +0.7 5.3 ergothioneine biosynthesis protein EgtB compare
CA264_14200 +0.7 0.9 NADH-quinone oxidoreductase subunit A compare
CA264_03170 +0.7 1.1 hypothetical protein compare
CA264_14815 +0.7 1.3 transcriptional regulator compare
CA264_14840 +0.7 5.8 hypothetical protein compare
CA264_18135 +0.7 4.0 ABC transporter ATP-binding protein compare
CA264_05930 +0.6 1.3 glyoxalase compare
CA264_14905 +0.6 2.8 hypothetical protein compare
CA264_15880 +0.6 1.1 5-formyltetrahydrofolate cyclo-ligase compare
CA264_08950 +0.6 4.6 short-chain dehydrogenase/reductase compare
CA264_16590 +0.6 1.5 site-2 protease family protein compare
CA264_17060 +0.6 2.0 hypothetical protein compare
CA264_07285 +0.6 5.1 alpha-amlyase compare
CA264_14835 +0.6 4.9 hypothetical protein compare
CA264_03590 +0.6 1.3 hypothetical protein compare
CA264_13015 +0.6 4.2 sensor histidine kinase compare
CA264_15590 +0.6 1.8 metal-dependent hydrolase compare
CA264_20310 +0.6 2.6 TVP38/TMEM64 family protein compare
CA264_20930 +0.6 1.9 hypothetical protein compare
CA264_01390 +0.6 3.2 iron ABC transporter permease compare
CA264_03385 +0.6 1.4 hypothetical protein compare
CA264_08490 +0.6 1.7 hypothetical protein compare
CA264_20680 +0.6 2.4 hypothetical protein compare
CA264_07195 +0.6 1.8 hypothetical protein compare
CA264_07275 +0.6 3.5 hypothetical protein compare
CA264_13865 +0.6 1.0 hypothetical protein compare
CA264_19215 +0.6 2.5 RNA polymerase subunit sigma compare
CA264_08800 +0.5 3.1 kinase inhibitor compare
CA264_19135 +0.5 1.3 hypothetical protein compare
CA264_07775 +0.5 1.3 transcriptional regulator compare
CA264_14805 +0.5 1.2 DNA-binding protein compare
CA264_07280 +0.5 3.1 hypothetical protein compare
CA264_20945 +0.5 1.5 hypothetical protein compare
CA264_10575 +0.5 1.3 hypothetical protein compare
CA264_12910 +0.5 1.3 acyl-CoA-binding protein compare
CA264_02685 +0.5 3.0 hypothetical protein compare
CA264_05240 +0.5 2.8 glycerol acyltransferase compare
CA264_17640 +0.5 2.8 acyl-CoA dehydrogenase compare
CA264_20285 +0.5 0.9 hypothetical protein compare
CA264_04610 +0.5 3.9 chain length determinant protein compare
CA264_07205 +0.5 2.3 hypothetical protein compare
CA264_15745 +0.5 0.6 tRNA-Arg compare
CA264_14405 +0.5 1.9 hypothetical protein compare
CA264_16980 +0.5 1.5 thiol reductase thioredoxin compare
CA264_00710 +0.5 2.2 hypothetical protein compare
CA264_21530 +0.5 1.4 four-helix bundle copper-binding protein compare
CA264_09770 +0.5 2.4 transcriptional regulator compare
CA264_07915 +0.5 3.1 two-component sensor histidine kinase compare
CA264_20455 +0.5 3.7 LLM class flavin-dependent oxidoreductase compare
CA264_02025 +0.5 2.4 nitroreductase compare
CA264_18245 +0.5 1.0 NADH-quinone oxidoreductase subunit A compare
CA264_03885 +0.5 2.0 hypothetical protein compare
CA264_02415 +0.5 1.2 dethiobiotin synthase compare
CA264_10955 +0.5 1.3 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_13210 +0.5 1.2 hypothetical protein compare
CA264_04460 +0.5 1.3 ABC transporter compare
CA264_09190 +0.5 1.9 hypothetical protein compare
CA264_15600 +0.5 2.4 tRNA glutamyl-Q synthetase compare
CA264_13165 +0.5 2.3 arylesterase compare
CA264_20875 +0.5 2.3 resolvase compare
CA264_13765 +0.5 2.4 DNA-binding transcriptional regulator OxyR compare
CA264_08955 +0.4 3.0 DNA polymerase IV compare
CA264_13170 +0.4 1.5 hypothetical protein compare
CA264_14025 +0.4 2.3 mismatch-specific DNA-glycosylase compare
CA264_01810 +0.4 2.1 hypothetical protein compare
CA264_15935 +0.4 1.3 hypothetical protein compare
CA264_17055 +0.4 1.6 serine/threonine protein phosphatase compare
CA264_01445 +0.4 0.9 hypothetical protein compare
CA264_13360 +0.4 2.0 ABC transporter ATP-binding protein compare
CA264_14415 +0.4 2.0 hypothetical protein compare
CA264_09340 +0.4 2.6 hypothetical protein compare
CA264_04865 +0.4 2.3 ATPase compare
CA264_10175 +0.4 2.2 hypothetical protein compare
CA264_08780 +0.4 2.9 hypothetical protein compare
CA264_03300 +0.4 1.1 hypothetical protein compare
CA264_12995 +0.4 1.9 hypothetical protein compare
CA264_10520 +0.4 0.9 molybdopterin synthase sulfur carrier subunit compare
CA264_04155 +0.4 2.0 hypothetical protein compare
CA264_10860 +0.4 0.9 hypothetical protein compare
CA264_17885 +0.4 0.9 GAF domain-containing protein compare
CA264_21000 +0.4 2.2 hypothetical protein compare
CA264_18260 +0.4 1.9 NADH-quinone oxidoreductase subunit C compare
CA264_10535 +0.4 1.3 cyclic pyranopterin monophosphate synthase MoaC compare
CA264_16015 +0.4 2.0 DNA-binding protein compare
CA264_13890 +0.4 2.5 manganese catalase compare
CA264_10050 +0.4 1.9 hypothetical protein compare
CA264_09250 +0.4 2.0 hemolysin compare
CA264_12725 +0.4 2.2 hypothetical protein compare
CA264_02970 +0.4 1.6 glucose-1-phosphate cytidylyltransferase compare
CA264_18345 +0.4 0.5 hypothetical protein compare
CA264_17735 +0.4 2.9 antibiotic ABC transporter ATP-binding protein compare
CA264_19090 +0.4 0.7 hypothetical protein compare
CA264_02900 +0.4 1.0 hypothetical protein compare
CA264_12795 +0.4 1.5 hypothetical protein compare
CA264_08410 +0.4 1.8 CRISPR-associated endonuclease Cas2 compare
CA264_05505 +0.4 1.8 hypothetical protein compare
CA264_05730 +0.4 1.5 hypothetical protein compare
CA264_21185 +0.4 1.4 hypothetical protein compare
CA264_05690 +0.4 2.0 hypothetical protein compare
CA264_15180 +0.4 2.0 energy transducer TonB compare
CA264_02910 +0.4 0.9 hypothetical protein compare
CA264_02695 +0.4 2.2 glycosyltransferase compare
CA264_02440 +0.4 0.9 vitamin K epoxide reductase compare
CA264_06600 +0.4 2.3 glycosyltransferase compare
CA264_21585 +0.4 1.9 hypothetical protein compare
CA264_21155 +0.4 2.0 hypothetical protein compare
CA264_19005 +0.4 2.6 SusC/RagA family TonB-linked outer membrane protein compare
CA264_09800 +0.4 2.2 DNA-binding response regulator compare
CA264_21255 +0.4 1.0 hypothetical protein compare
CA264_14510 +0.4 2.5 hypothetical protein compare
CA264_17545 +0.4 2.6 single-stranded-DNA-specific exonuclease RecJ compare
CA264_18835 +0.4 2.3 MFS transporter compare
CA264_20785 +0.4 1.6 hypothetical protein compare
CA264_04140 +0.3 2.3 cyanophycinase compare
CA264_15135 +0.3 1.2 TIGR00730 family Rossman fold protein compare
CA264_10440 +0.3 2.4 LysR family transcriptional regulator compare
CA264_06240 +0.3 1.6 acetylornithine carbamoyltransferase compare
CA264_03400 +0.3 2.0 hypothetical protein compare
CA264_18030 +0.3 2.2 cation transporter compare
CA264_16490 +0.3 1.7 glucose-1-phosphate thymidylyltransferase compare
CA264_07485 +0.3 1.1 septal ring lytic transglycosylase RlpA family lipoprotein compare
CA264_12280 +0.3 0.8 hypothetical protein compare
CA264_19145 +0.3 2.4 hypothetical protein compare
CA264_10255 +0.3 0.8 hypothetical protein compare
CA264_17395 +0.3 1.7 glutathione synthetase compare
CA264_09725 +0.3 1.6 cAMP-binding protein compare
CA264_11865 +0.3 1.3 hypothetical protein compare
CA264_12840 +0.3 1.2 hypothetical protein compare
CA264_02620 +0.3 1.8 two-component sensor histidine kinase compare
CA264_17305 +0.3 0.6 hypothetical protein compare
CA264_14935 +0.3 1.3 sec-independent protein translocase TatC compare
CA264_10055 +0.3 2.0 hypothetical protein compare
CA264_14735 +0.3 1.7 damage-inducible protein DinB compare
CA264_11220 +0.3 2.0 hypothetical protein compare
CA264_17950 +0.3 1.6 hypothetical protein compare
CA264_10905 +0.3 2.1 phytoene synthase compare
CA264_20830 +0.3 1.5 hypothetical protein compare
CA264_12190 +0.3 1.6 hypothetical protein compare
CA264_05640 +0.3 2.4 transporter compare
CA264_18075 +0.3 2.2 3-dehydro-L-gulonate 2-dehydrogenase compare
CA264_10710 +0.3 1.2 response regulator compare
CA264_03875 +0.3 1.2 HIT family protein compare
CA264_02580 +0.3 1.0 transcriptional regulator compare
CA264_04270 +0.3 1.7 NADH:ubiquinone oxidoreductase subunit A compare
CA264_02575 +0.3 1.2 potassium transporter KefB compare
CA264_13075 +0.3 1.6 thioesterase compare
CA264_04900 +0.3 1.5 bacillithiol biosynthesis deacetylase BshB1 compare
CA264_07605 +0.3 1.9 response regulator compare
CA264_13605 +0.3 1.6 hypothetical protein compare
CA264_08960 +0.3 2.3 haloalkane dehalogenase compare
CA264_10945 +0.3 1.9 phenylacetic acid degradation b compare
CA264_07590 +0.3 1.7 hypothetical protein compare
CA264_18265 +0.3 1.1 hypothetical protein compare
CA264_15005 +0.3 2.1 magnesium/cobalt efflux protein compare
CA264_13860 +0.3 1.2 hypothetical protein compare
CA264_15190 +0.3 1.5 hypothetical protein compare
CA264_19210 +0.3 1.8 SAM-dependent methyltransferase compare
CA264_13040 +0.3 2.0 acriflavin resistance protein compare
CA264_19030 +0.3 1.0 ribosomal subunit interface protein compare
CA264_17700 +0.3 1.9 hypothetical protein compare
CA264_17755 +0.3 1.9 ABC transporter compare
CA264_07705 +0.3 1.2 hypothetical protein compare
CA264_19060 +0.3 2.2 hypothetical protein compare
CA264_10910 +0.3 2.3 phytoene dehydrogenase compare
CA264_11965 +0.3 1.5 RNA polymerase subunit sigma compare
CA264_19010 +0.3 2.7 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_02980 +0.3 1.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
CA264_09430 +0.3 1.3 2-isopropylmalate synthase compare
CA264_17195 +0.3 1.3 hypothetical protein compare
CA264_04165 +0.3 1.2 isoaspartyl peptidase/L-asparaginase compare
CA264_15250 +0.3 0.9 cbs domain containing protein compare
CA264_10890 +0.3 1.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
CA264_20280 +0.3 1.4 hypothetical protein compare
CA264_07555 +0.3 1.9 aqualysin 1 compare
CA264_13130 +0.3 1.8 peptidase S1 compare
CA264_18585 +0.3 1.8 hypothetical protein compare
CA264_18145 +0.3 1.4 ribonuclease compare
CA264_21095 +0.3 2.4 heavy metal translocating P-type ATPase compare
CA264_18970 +0.3 1.2 hypothetical protein compare
CA264_17855 +0.3 2.0 EamA family transporter compare


Specific Phenotypes

None in this experiment

For Pontibacter actiniarum KMM 6156, DSM 19842 in stress experiments

For stress benzoic acid across organisms