Experiment set2IT089 for Agrobacterium fabrum C58

Compare to:

Dextrin from potato starch carbon source

200 most important genes:

  gene name fitness t score description  
Atu0043 -5.2 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu0017 -5.1 -5.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1030 -5.1 -3.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1750 -5.0 -7.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu0038 -4.8 -7.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0099 -4.6 -13.8 prephenate dehydratase compare
Atu0486 -4.5 -5.2 dihydroorotate dehydrogenase compare
Atu0679 -4.5 -7.8 ATP phosphoribosyltransferase compare
Atu2718 -4.4 -10.8 homoserine O-succinyltransferase compare
Atu2709 -4.4 -21.7 3-isopropylmalate dehydratase, large subunit compare
Atu2726 -4.4 -22.6 pyruvate carboxylase compare
Atu3706 -4.3 -13.1 D-3-phosphoglycerate dehydrogenase compare
Atu2036 -4.3 -15.5 acetolactate synthase III, large subunit compare
Atu0041 -4.2 -4.1 glutamine amidotransferase compare
Atu2264 -4.1 -14.0 2-isopropylmalate synthase compare
Atu0039 -4.1 -4.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu0399 -4.0 -10.7 dihydroorotase compare
Atu2289 -4.0 -17.1 anthranilate synthase component I and II compare
Atu1588 -4.0 -11.9 homoserine dehydrogenase compare
Atu2791 -4.0 -5.7 3-isopropylmalate dehydrogenase compare
Atu3783 -3.9 -20.0 glutamate synthase subunit beta compare
Atu1687 -3.9 -12.3 anthranilate phosphoribosyltransferase compare
Atu0432 -3.9 -10.6 O-succinylhomoserine sulfhydrylase compare
Atu1205 -3.9 -18.7 threonine dehydratase compare
Atu2040 -3.9 -6.2 phosphoserine phosphatase compare
Atu1688 -3.9 -9.5 indole-3-glycerol-phosphate synthase compare
Atu0030 -3.8 -2.6 phosphocarrier protein HPr compare
Atu3707 -3.8 -4.6 phosphoserine aminotransferase compare
Atu0678 -3.7 -8.0 histidyl-tRNA synthetase compare
Atu3784 -3.7 -23.0 glutamate synthase large subunit compare
Atu1446 -3.6 -4.9 two component response regulator compare
Atu3739 -3.5 -4.3 phosphoglycerate kinase compare
Atu0400 -3.5 -8.0 orotate phosphoribosyltransferase compare
Atu0647 -3.4 -8.5 phosphoribosylamine--glycine ligase compare
Atu3885 -3.2 -8.8 inositol monophosphatase compare
Atu1850 -3.2 -5.6 phosphoribosylformylglycinamidine synthetase II compare
Atu2747 -3.2 -12.3 hypothetical protein compare
Atu3754 -3.2 -6.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0298 -3.1 -10.1 orotidine 5 compare
Atu0537 -3.1 -9.8 histidinol dehydrogenase compare
Atu1308 -3.1 -7.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1307 -3.0 -9.0 dihydroorotase compare
Atu2650 -3.0 -14.8 glycerol-3-phosphate dehydrogenase compare
Atu0040 -3.0 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0723 -2.9 -2.8 FAD dependent oxidoreductase compare
Atu1140 -2.9 -6.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1686 -2.8 -17.7 peptidyl-prolyl cis-trans isomerse D compare
Atu1845 -2.6 -7.4 phosphoribosylformylglycinamidine synthase I compare
Atu1141 -2.6 -10.7 Phosphoribosylglycinamide synthetase compare
Atu2790 -2.6 -3.4 3-isopropylmalate dehydratase, small subunit compare
Atu0792 -2.5 -7.4 hypothetical protein compare
Atu1456 -2.5 -11.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2015 -2.4 -12.5 aminotransferase compare
Atu1075 -2.4 -7.0 amidophosphoribosyltransferase compare
Atu0184 -2.4 -4.2 glucokinase compare
Atu1589 -2.3 -9.8 aminotransferase, class I compare
Atu3755 -2.3 -4.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0641 -2.2 -5.2 hypothetical protein compare
Atu3482 -2.2 -9.8 pantoate--beta-alanine ligase compare
Atu1454 -2.1 -7.8 siroheme synthase compare
Atu5142 -2.1 -2.2 hypothetical protein compare
Atu3483 -2.1 -8.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0598 -2.1 -8.4 phosphogluconate dehydratase compare
Atu5513 -2.0 -1.4 cold shock protein compare
Atu3008 -2.0 -1.5 hypothetical protein compare
Atu5451 -1.9 -1.0 hypothetical protein compare
Atu0185 -1.9 -8.4 methylglyoxal synthase compare
Atu3469 -1.8 -3.0 phosphoglyceromutase compare
Atu1463 -1.8 -6.3 glycine cleavage system component H compare
Atu1455 -1.8 -2.7 hypothetical protein compare
Atu1462 -1.7 -11.8 glycine cleavage system protein P2 compare
Atu2548 -1.7 -11.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2554 -1.7 -3.3 lysyl-tRNA synthetase compare
Atu0876 -1.6 -2.9 superoxide dismutase compare
Atu6189 -1.6 -0.8 protein secretion chaperone compare
Atu5517 -1.6 -2.4 hypothetical protein compare
Atu1464 -1.6 -6.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu3731 -1.6 -8.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu1604 -1.5 -9.7 poly-beta-hydroxybutyrate synthase compare
Atu5475 -1.5 -2.0 hypothetical protein compare
Atu4616 -1.4 -2.9 dTDP-4-dehydrorhamnose reductase compare
Atu1844 -1.4 -3.3 Phosphoribosylformylglycinamidine synthetase compare
Atu4173 -1.4 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu2155 -1.3 -9.9 methionine synthase compare
Atu4166 -1.3 -2.1 UDP-glucose 4-epimerase compare
Atu1359 -1.3 -1.4 dnaK deletion suppressor protein compare
Atu8115 -1.3 -4.8 Hypothetical Protein compare
Atu6040 -1.3 -2.5 conjugal transfer protein compare
Atu1572 -1.2 -6.0 hydrolase compare
Atu1891 -1.2 -4.0 cobalamin biosynthesis protein compare
Atu4618 -1.2 -7.1 dTDP-rhamnose-3,5-epimerase compare
Atu0106 -1.1 -3.2 cold shock protein compare
Atu2205 -1.1 -2.2 transcriptional regulator, MarR family compare
Atu2125 -1.1 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu3908 -1.1 -6.6 GntR family transcriptional regulator compare
Atu5146 -1.0 -1.5 hypothetical protein compare
Atu4617 -1.0 -5.8 dTDP-D-glucose-4,6-dehydratase compare
Atu3998 -1.0 -5.9 8-amino-7-oxononanoate synthase compare
Atu1685 -1.0 -1.1 hypothetical protein compare
Atu2207 -1.0 -3.6 two component sensor kinase compare
Atu3496 -1.0 -3.6 hypothetical protein compare
Atu2805 -1.0 -3.5 cobalamin synthesis protein compare
Atu4614 -1.0 -5.2 glycosyltransferase compare
Atu6107 -1.0 -2.1 hypothetical protein compare
Atu1620 -0.9 -6.5 triosephosphate isomerase compare
Atu6104 -0.9 -2.5 conserved hypothetical protein compare
Atu3997 -0.9 -7.0 biotin synthetase compare
Atu5010 -0.9 -1.1 hypothetical protein compare
Atu2376 -0.9 -0.7 hypothetical protein compare
Atu5470 -0.9 -1.5 hypothetical protein compare
Atu2800 -0.9 -1.4 precorrin-3B C17-methyltransferase compare
Atu4000 -0.9 -6.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0086 -0.9 -1.1 ribosome-binding factor A compare
Atu8054 -0.9 -0.3 hypothetical protein compare
Atu4615 -0.9 -4.9 glucose-1-phosphate thymidylyltransferase compare
Atu3468 -0.9 -0.9 hypothetical protein compare
Atu6125 -0.9 -2.1 conjugative transfer protein, Dtr system compare
Atu4613 -0.9 -5.8 glycosyltransferase compare
Atu0026 -0.9 -0.8 hypothetical protein compare
Atu3353 -0.9 -4.8 mannose-1-phosphate guanylyltransferase compare
Atu6153 -0.9 -1.8 conserved hypothetical protein compare
Atu3311 -0.9 -6.7 phosphomannose isomerase compare
Atu4075 -0.8 -5.2 glycogen synthase compare
Atu0029 -0.8 -3.3 S-adenosylhomocysteine hydrolase compare
Atu1339 -0.8 -3.4 ribonuclease E compare
Atu2770 -0.8 -4.3 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2183 -0.8 -3.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2286 -0.8 -1.6 hypothetical protein compare
Atu5075 -0.8 -2.5 GntR family transcriptional regulator compare
Atu5173 -0.8 -0.9 dehydrogenase compare
Atu0291 -0.8 -5.1 hypothetical protein compare
Atu2442 -0.8 -2.4 hypothetical protein compare
Atu6032 -0.8 -2.3 conjugal transfer protein compare
Atu3032 -0.8 -2.8 hypothetical protein compare
Atu2555 -0.8 -2.1 L-lysine 2,3-aminomutase compare
Atu0332 -0.8 -4.4 RNA polymerase sigma-54 factor compare
Atu4001 -0.8 -3.8 3-oxoacyl-ACP synthase compare
Atu6058 -0.8 -3.1 ABC transporter, nucleotide binding/ATPase protein (nitrate/sulfonates) compare
Atu2804 -0.8 -5.2 cobaltochelatase subunit compare
Atu2379 -0.8 -4.9 phosphomannomutase compare
Atu2193 -0.7 -0.8 hypothetical protein compare
Atu5427 -0.7 -1.5 hypothetical protein compare
Atu1457 -0.7 -1.3 hypothetical protein compare
Atu4882 -0.7 -1.9 hypothetical protein compare
Atu2123 -0.7 -3.2 methylenetetrahydrofolate reductase compare
Atu3712 -0.7 -1.2 hypothetical protein compare
Atu8099 -0.7 -0.7 hypothetical protein compare
Atu1439 -0.7 -1.7 hypothetical protein compare
Atu2484 -0.7 -1.3 hypothetical protein compare
Atu6158 -0.7 -2.1 conserved hypothetical protein compare
Atu3340 -0.7 -3.9 trehalose/maltose ABC transporter permease compare
Atu4773 -0.7 -1.3 two component response regulator compare
Atu5158 -0.7 -1.7 hypothetical protein compare
Atu8177 -0.7 -1.9 hypothetical protein compare
Atu4217 -0.7 -1.1 TetR family transcriptional regulator compare
Atu8023 -0.7 -1.2 hypothetical protein compare
Atu2799 -0.7 -2.2 precorrin-6x reductase compare
Atu1542 -0.7 -3.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4838 -0.6 -2.4 outer membrane lipoprotein compare
Atu2809 -0.6 -3.9 cobalamin biosynthesis protein compare
Atu1725 -0.6 -2.1 hypothetical protein compare
Atu1983 -0.6 -2.3 hypothetical protein compare
Atu3339 -0.6 -3.3 trehalose/maltose ABC transporter permease compare
Atu2127 -0.6 -4.0 L-carnitine dehydratase compare
Atu2793 -0.6 -2.7 cobyrinic acid a,c-diamide synthase compare
Atu0590 -0.6 -2.8 transcriptional regulator repressor compare
Atu5148 -0.6 -1.1 hypothetical protein compare
Atu3732 -0.6 -3.6 hemolysin compare
Atu5501 -0.6 -1.0 hypothetical protein compare
Atu4609 -0.6 -4.2 glycosyltransferase compare
Atu6030 -0.6 -1.6 ORF13 hypothetical protein compare
Atu4896 -0.6 -0.7 acetyltransferase compare
Atu4223 -0.6 -1.4 sarcosine oxidase delta subunit compare
Atu6114 -0.6 -0.6 hypothetical protein compare
Atu1810 -0.6 -0.7 hypothetical protein compare
Atu0923 -0.6 -3.3 hypothetical protein compare
Atu3750 -0.6 -1.3 thiamine-phosphate pyrophosphorylase compare
Atu4803 -0.6 -2.9 two component response regulator compare
Atu1028 -0.6 -1.2 hypothetical protein compare
Atu0769 -0.6 -0.8 protoheme IX farnesyltransferase compare
Atu3394 -0.6 -1.3 iron ABC transporter ATPase compare
Atu0611 -0.6 -2.3 ABC transporter, membrane spanning protein compare
Atu3338 -0.6 -3.1 trehalose/maltose ABC transporter substrate-binding protein compare
Atu2831 -0.5 -1.7 glucose inhibited division protein A compare
Atu1372 -0.5 -1.6 hypothetical protein compare
Atu0981 -0.5 -3.9 glutamate-ammonia-ligase adenylyltransferase compare
Atu2579 -0.5 -2.7 metal dependant beta lactamase protein compare
Atu2201 -0.5 -1.4 hydrolase compare
Atu1225 -0.5 -0.8 hypothetical protein compare
Atu4643 -0.5 -2.0 hypothetical protein compare
Atu4477 -0.5 -2.7 TetR family transcriptional regulator compare
Atu5172 -0.5 -2.1 type IV secretion protein AvhB11 compare
Atu3341 -0.5 -3.5 trehalose/maltose ABC transporter ATPase compare
Atu0659 -0.5 -2.0 NTP pyrophosphohydrolase, MutT family compare
Atu1667 -0.5 -1.2 hypothetical protein compare
Atu6028 -0.5 -2.0 ABC transporter, nucleotide binding/ATPase protein (nopaline) compare
Atu5207 -0.5 -1.7 hypothetical protein compare
Atu0627 -0.5 -2.2 carboxymethylenebutenolidase compare
Atu6120 -0.5 -1.4 HNS-type DNA binding protein compare
Atu0846 -0.5 -1.2 transcriptional regulator, MarR family compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in carbon source experiments

For carbon source Dextrin from potato starch across organisms