Experiment set2IT088 for Pseudomonas simiae WCS417

Compare to:

D-Galacturonic Acid monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18585 -6.2 -4.3 3-isopropylmalate dehydrogenase compare
PS417_23805 -5.5 -5.3 acetolactate synthase 3 regulatory subunit compare
PS417_18600 -5.2 -5.0 isopropylmalate isomerase compare
PS417_04415 -5.0 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25725 -4.9 -15.7 anthranilate synthase component I compare
PS417_12855 -4.8 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01850 -4.8 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26740 -4.7 -11.0 homoserine acetyltransferase compare
PS417_01565 -4.7 -4.5 imidazole glycerol phosphate synthase compare
PS417_01855 -4.7 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_23800 -4.6 -9.4 ketol-acid reductoisomerase compare
PS417_18560 -4.5 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27040 -4.5 -5.3 3-phosphoglycerate dehydrogenase compare
PS417_01575 -4.5 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_00185 -4.3 -4.2 tryptophan synthase subunit beta compare
PS417_23810 -4.3 -13.0 acetolactate synthase 3 catalytic subunit compare
PS417_27795 -4.3 -2.0 orotate phosphoribosyltransferase compare
PS417_23110 -4.2 -10.2 2-isopropylmalate synthase compare
PS417_04420 -4.2 -10.4 histidinol dehydrogenase compare
PS417_24745 -4.1 -5.6 gamma-glutamyl phosphate reductase compare
PS417_26890 -4.0 -7.2 dihydroxy-acid dehydratase compare
PS417_08125 -4.0 -1.9 prephenate dehydratase compare
PS417_23545 -4.0 -3.8 gamma-glutamyl kinase compare
PS417_25720 -3.9 -8.7 anthranilate synthase component II compare
PS417_12290 -3.8 -8.8 sulfite reductase compare
PS417_01605 -3.7 -2.5 phosphoglycerate mutase compare
PS417_16465 -3.6 -10.5 sirohydrochlorin ferrochelatase compare
PS417_02510 -3.6 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18595 -3.5 -3.6 3-isopropylmalate dehydratase compare
PS417_02005 -3.5 -11.2 glutamate synthase compare
PS417_25715 -3.5 -6.2 anthranilate phosphoribosyltransferase compare
PS417_26745 -3.5 -4.7 methionine biosynthesis protein MetW compare
PS417_05595 -3.5 -8.6 ornithine carbamoyltransferase compare
PS417_25710 -3.4 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_02000 -3.4 -11.7 glutamate synthase compare
PS417_18530 -3.3 -7.7 O-succinylhomoserine sulfhydrylase compare
PS417_23995 -3.1 -1.5 preprotein translocase subunit SecG compare
PS417_24155 -3.0 -3.5 ATP-binding protein compare
PS417_20125 -3.0 -5.2 phosphoribosylglycinamide formyltransferase compare
PS417_26040 -2.8 -5.0 malate synthase compare
PS417_01560 -2.8 -3.2 imidazoleglycerol-phosphate dehydratase compare
PS417_26995 -2.7 -9.2 phosphoserine phosphatase compare
PS417_26730 -2.7 -1.8 pyrroline-5-carboxylate reductase compare
PS417_07640 -2.7 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_06375 -2.7 -1.8 deoxycytidine triphosphate deaminase compare
PS417_27195 -2.6 -2.5 N-acetylglutamate synthase compare
PS417_02415 -2.5 -5.8 phosphoserine phosphatase compare
PS417_01580 -2.5 -2.2 imidazole glycerol phosphate synthase compare
PS417_20610 -2.4 -2.2 hypothetical protein compare
PS417_00180 -2.3 -3.1 tryptophan synthase subunit alpha compare
PS417_13510 -2.3 -2.1 polyketide cyclase compare
PS417_01210 -2.3 -9.5 hypothetical protein compare
PS417_04200 -2.2 -6.8 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data) conserved
PS417_18690 -2.2 -4.8 aromatic amino acid aminotransferase compare
PS417_20160 -2.2 -5.2 cysteine synthase compare
PS417_20985 -2.2 -3.8 porin compare
PS417_27835 -2.0 -6.8 endoribonuclease compare
PS417_01570 -2.0 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08230 -2.0 -2.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_17360 -1.9 -9.2 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) conserved
PS417_21510 -1.9 -2.2 histidine kinase compare
PS417_08225 -1.9 -5.4 acetolactate synthase compare
PS417_26695 -1.9 -1.4 uracil phosphoribosyltransferase compare
PS417_23775 -1.8 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_04205 -1.8 -6.2 D-galacturonate transporter (MFS superfamily) (from data) conserved
PS417_17365 -1.7 -5.6 galactaro-1,5-lactonase (from data) conserved
PS417_08220 -1.7 -1.3 epimerase compare
PS417_16570 -1.6 -8.7 isocitrate lyase compare
PS417_26850 -1.6 -1.3 twin-arginine translocation pathway signal protein compare
PS417_21705 -1.6 -4.7 arginine N-succinyltransferase compare
PS417_19600 -1.5 -1.7 exonuclease compare
PS417_21125 -1.5 -5.9 phosphoadenosine phosphosulfate reductase compare
PS417_14515 -1.5 -2.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_08195 -1.5 -7.0 hypothetical protein compare
PS417_08245 -1.5 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_04195 -1.4 -2.8 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) conserved
PS417_04210 -1.4 -3.8 Galactarate dehydratase (EC 4.2.1.42) (from data) conserved
PS417_20030 -1.4 -2.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_23770 -1.3 -2.3 exodeoxyribonuclease V subunit alpha compare
PS417_08155 -1.3 -2.4 integration host factor subunit beta compare
PS417_21480 -1.3 -2.0 23S rRNA pseudouridylate synthase compare
PS417_27010 -1.3 -5.6 threonine dehydratase compare
PS417_23950 -1.3 -2.1 polynucleotide phosphorylase/polyadenylase compare
PS417_24935 -1.3 -1.0 hypothetical protein compare
PS417_14940 -1.3 -2.3 LysR family transcriptional regulator compare
PS417_24835 -1.3 -2.6 hypothetical protein compare
PS417_07595 -1.2 -3.2 PasA protein compare
PS417_23900 -1.2 -7.3 poly(A) polymerase compare
PS417_11585 -1.2 -2.2 LuxR family transcriptional regulator compare
PS417_08205 -1.2 -3.1 acetyltransferase compare
PS417_17490 -1.1 -1.9 ABC transporter ATP-binding protein compare
PS417_00385 -1.1 -1.1 Fur family transcriptional regulator compare
PS417_27585 -1.1 -1.8 diaminopimelate epimerase compare
PS417_27435 -1.1 -4.2 polyphosphate kinase compare
PS417_26725 -1.1 -3.5 hypothetical protein compare
PS417_21700 -1.1 -2.9 arginine N-succinyltransferase compare
PS417_20665 -1.1 -4.8 hypothetical protein compare
PS417_08130 -1.1 -1.7 aspartate aminotransferase compare
PS417_10535 -1.1 -4.1 hypothetical protein compare
PS417_18755 -1.0 -2.2 CrtK compare
PS417_27035 -1.0 -2.9 FAD-linked oxidase compare
PS417_18885 -1.0 -1.8 GntR family transcriptional regulator compare
PS417_14775 -1.0 -4.2 major facilitator transporter compare
PS417_01915 -1.0 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_05010 -1.0 -1.5 IclR family transcriptional regulator compare
PS417_19425 -1.0 -1.1 allantoicase compare
PS417_06945 -1.0 -1.1 membrane protein compare
PS417_08540 -1.0 -2.7 RNA helicase compare
PS417_23380 -1.0 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_01995 -0.9 -1.2 hypothetical protein compare
PS417_13255 -0.9 -2.3 ABC transporter compare
PS417_13165 -0.9 -2.2 peroxidase compare
PS417_17795 -0.9 -1.6 ABC transporter permease compare
PS417_01620 -0.9 -2.0 preprotein translocase subunit SecB compare
PS417_17830 -0.9 -2.0 4-hydroxyphenylacetate isomerase compare
PS417_03385 -0.9 -0.9 flavin reductase compare
PS417_04055 -0.9 -1.9 peptide transporter compare
PS417_18420 -0.9 -2.2 deoxyribonuclease compare
PS417_07170 -0.9 -2.3 hypothetical protein compare
PS417_08200 -0.9 -2.4 hypothetical protein compare
PS417_25175 -0.9 -1.7 hypothetical protein compare
PS417_01920 -0.9 -1.7 ATP-dependent protease subunit HslV compare
PS417_09625 -0.9 -1.9 sugar ABC transporter substrate-binding protein compare
PS417_24620 -0.9 -1.5 hypothetical protein compare
PS417_13305 -0.8 -1.1 hypothetical protein compare
PS417_17035 -0.8 -1.2 Cro/Cl family transcriptional regulator compare
PS417_01290 -0.8 -1.6 ADP-ribose diphosphatase compare
PS417_25985 -0.8 -1.5 dethiobiotin synthetase compare
PS417_22230 -0.8 -2.4 class I peptide chain release factor compare
PS417_06400 -0.8 -1.9 succinylglutamate desuccinylase compare
PS417_20720 -0.8 -2.0 cbb3-type cytochrome c oxidase subunit I compare
PS417_06680 -0.8 -5.2 nuclease PIN compare
PS417_07565 -0.8 -1.4 hypothetical protein compare
PS417_22520 -0.8 -1.7 histidine kinase compare
PS417_00160 -0.8 -2.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_16990 -0.8 -3.1 acyl-CoA dehydrogenase compare
PS417_22445 -0.8 -2.3 ATP-dependent DNA helicase RuvB compare
PS417_18025 -0.8 -1.8 cytochrome C compare
PS417_28225 -0.8 -1.1 hypothetical protein compare
PS417_05025 -0.8 -1.4 maleylacetoacetate isomerase compare
PS417_12355 -0.7 -1.4 magnesium chelatase compare
PS417_14140 -0.7 -1.4 membrane protein compare
PS417_27870 -0.7 -1.9 ATP-dependent DNA helicase RecG compare
PS417_14315 -0.7 -1.5 2,5-dioxovalerate dehydrogenase compare
PS417_09150 -0.7 -1.2 energy transducer TonB compare
PS417_05985 -0.7 -2.4 chemotaxis protein CheY compare
PS417_24765 -0.7 -1.9 membrane protein compare
PS417_22195 -0.7 -2.8 peptidase compare
PS417_04915 -0.7 -1.6 glutamine ABC transporter ATP-binding protein compare
PS417_09085 -0.7 -1.2 hypothetical protein compare
PS417_00620 -0.7 -3.2 GntR family transcriptional regulator compare
PS417_14980 -0.7 -1.0 universal stress protein UspA compare
PS417_21690 -0.7 -2.7 N-succinylarginine dihydrolase compare
PS417_26175 -0.7 -0.5 sarcosine oxidase subunit gamma compare
PS417_26985 -0.7 -2.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_04365 -0.7 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21750 -0.7 -5.4 acetyl-CoA synthetase compare
PS417_04410 -0.7 -1.1 hypothetical protein compare
PS417_03100 -0.7 -0.9 pilus assembly protein compare
PS417_03455 -0.7 -0.6 type III secretion protein compare
PS417_06045 -0.7 -1.1 membrane protein compare
PS417_00195 -0.7 -1.2 hypothetical protein compare
PS417_18800 -0.7 -2.2 hypothetical protein compare
PS417_16095 -0.7 -2.3 amidohydrolase compare
PS417_12310 -0.7 -3.8 methionine synthase compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_18590 -0.7 -1.3 SAM-dependent methyltransferase compare
PS417_09745 -0.7 -2.5 peptide ABC transporter substrate-binding protein compare
PS417_12565 -0.7 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_14655 -0.7 -1.0 lysine transporter LysE compare
PS417_11415 -0.7 -2.3 hypothetical protein compare
PS417_07165 -0.7 -2.9 dihydrodipicolinate synthase compare
PS417_07010 -0.7 -1.6 pseudouridine synthase compare
PS417_27305 -0.7 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_17125 -0.7 -2.3 transcriptional regulator compare
PS417_08410 -0.6 -1.2 hypothetical protein compare
PS417_06600 -0.6 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_14455 -0.6 -1.9 polyketide cyclase compare
PS417_27610 -0.6 -2.7 hypothetical protein compare
PS417_24370 -0.6 -0.7 (2Fe-2S)-binding protein compare
PS417_20170 -0.6 -1.5 hypothetical protein compare
PS417_04860 -0.6 -3.3 ATPase compare
PS417_11475 -0.6 -2.0 membrane protein compare
PS417_04425 -0.6 -2.9 histidinol-phosphate aminotransferase compare
PS417_22385 -0.6 -4.0 quinolinate synthase A compare
PS417_15750 -0.6 -1.0 protease compare
PS417_23150 -0.6 -1.2 Cro/Cl family transcriptional regulator compare
PS417_21695 -0.6 -1.6 succinylglutamate-semialdehyde dehydrogenase compare
PS417_17565 -0.6 -1.1 branched-chain amino acid aminotransferase compare
PS417_22570 -0.6 -0.7 H-NS histone compare
PS417_09545 -0.6 -1.5 aldehyde-activating protein compare
PS417_19805 -0.6 -2.4 flagellar M-ring protein FliF compare
PS417_10685 -0.6 -2.1 acyl-CoA dehydrogenase compare
PS417_28510 -0.6 -2.8 chromosome partitioning protein compare
PS417_01735 -0.6 -2.0 ABC transporter permease compare
PS417_05975 -0.6 -0.5 chemotaxis protein CheW compare
PS417_14075 -0.6 -1.4 hypothetical protein compare
PS417_16750 -0.6 -1.6 ABC transporter ATP-binding protein compare
PS417_07175 -0.6 -2.2 beta-lactamase compare
PS417_21430 -0.6 -1.0 3-oxoacyl-ACP synthase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Pseudomonas simiae WCS417

For carbon source D-Galacturonic Acid monohydrate across organisms