Experiment set2IT088 for Agrobacterium fabrum C58

Compare to:

Dextrin from potato starch carbon source

200 most important genes:

  gene name fitness t score description  
Atu0679 -5.5 -8.9 ATP phosphoribosyltransferase compare
Atu2790 -5.2 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu0039 -5.0 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu1750 -4.9 -5.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu0432 -4.8 -10.5 O-succinylhomoserine sulfhydrylase compare
Atu2264 -4.6 -15.0 2-isopropylmalate synthase compare
Atu0030 -4.5 -2.5 phosphocarrier protein HPr compare
Atu0678 -4.5 -10.1 histidyl-tRNA synthetase compare
Atu2709 -4.5 -21.3 3-isopropylmalate dehydratase, large subunit compare
Atu1687 -4.4 -9.2 anthranilate phosphoribosyltransferase compare
Atu1205 -4.4 -18.3 threonine dehydratase compare
Atu0400 -4.3 -7.7 orotate phosphoribosyltransferase compare
Atu0099 -4.3 -13.1 prephenate dehydratase compare
Atu0537 -4.2 -10.0 histidinol dehydrogenase compare
Atu2289 -4.2 -19.5 anthranilate synthase component I and II compare
Atu0399 -4.1 -10.3 dihydroorotase compare
Atu2726 -4.1 -20.4 pyruvate carboxylase compare
Atu3707 -4.0 -5.5 phosphoserine aminotransferase compare
Atu3783 -4.0 -19.7 glutamate synthase subunit beta compare
Atu3706 -3.9 -10.9 D-3-phosphoglycerate dehydrogenase compare
Atu2791 -3.9 -7.4 3-isopropylmalate dehydrogenase compare
Atu2036 -3.9 -13.9 acetolactate synthase III, large subunit compare
Atu1307 -3.8 -6.7 dihydroorotase compare
Atu2650 -3.7 -14.6 glycerol-3-phosphate dehydrogenase compare
Atu0298 -3.7 -9.5 orotidine 5 compare
Atu1688 -3.6 -11.1 indole-3-glycerol-phosphate synthase compare
Atu2040 -3.6 -5.5 phosphoserine phosphatase compare
Atu1588 -3.6 -9.4 homoserine dehydrogenase compare
Atu3885 -3.6 -11.0 inositol monophosphatase compare
Atu3784 -3.5 -23.0 glutamate synthase large subunit compare
Atu0017 -3.4 -4.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0043 -3.4 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu0038 -3.4 -4.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0792 -3.4 -9.0 hypothetical protein compare
Atu3754 -3.3 -6.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2747 -3.2 -15.0 hypothetical protein compare
Atu2718 -3.2 -7.5 homoserine O-succinyltransferase compare
Atu0486 -3.2 -5.6 dihydroorotate dehydrogenase compare
Atu3483 -3.0 -7.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu6114 -3.0 -2.8 hypothetical protein compare
Atu0647 -2.9 -9.4 phosphoribosylamine--glycine ligase compare
Atu1686 -2.9 -16.7 peptidyl-prolyl cis-trans isomerse D compare
Atu2015 -2.9 -10.0 aminotransferase compare
Atu1308 -2.9 -5.8 aspartate carbamoyl transferase catalytic subunit compare
Atu3739 -2.9 -3.8 phosphoglycerate kinase compare
Atu1850 -2.8 -5.5 phosphoribosylformylglycinamidine synthetase II compare
Atu1844 -2.6 -5.6 Phosphoribosylformylglycinamidine synthetase compare
Atu1456 -2.5 -12.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0723 -2.5 -2.9 FAD dependent oxidoreductase compare
Atu1140 -2.4 -8.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3755 -2.4 -5.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1446 -2.4 -3.4 two component response regulator compare
Atu0184 -2.4 -4.4 glucokinase compare
Atu0598 -2.3 -7.3 phosphogluconate dehydratase compare
Atu5146 -2.3 -1.4 hypothetical protein compare
Atu1141 -2.3 -6.1 Phosphoribosylglycinamide synthetase compare
Atu1075 -2.3 -9.1 amidophosphoribosyltransferase compare
Atu1589 -2.3 -9.0 aminotransferase, class I compare
Atu3482 -2.2 -9.3 pantoate--beta-alanine ligase compare
Atu1454 -2.2 -9.6 siroheme synthase compare
Atu2554 -2.2 -3.4 lysyl-tRNA synthetase compare
Atu0040 -2.1 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0641 -2.1 -5.1 hypothetical protein compare
Atu5430 -2.1 -1.4 hypothetical protein compare
Atu3469 -2.1 -3.6 phosphoglyceromutase compare
Atu0185 -2.0 -9.1 methylglyoxal synthase compare
Atu1845 -1.9 -3.1 phosphoribosylformylglycinamidine synthase I compare
Atu0354 -1.9 -3.1 ferric uptake regulator compare
Atu1463 -1.9 -5.9 glycine cleavage system component H compare
Atu3121 -1.9 -1.7 cold shock protein compare
Atu1455 -1.8 -2.7 hypothetical protein compare
Atu1464 -1.8 -7.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu1030 -1.8 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2548 -1.8 -12.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3731 -1.7 -6.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu1462 -1.7 -11.2 glycine cleavage system protein P2 compare
Atu5115 -1.6 -1.5 hypothetical protein compare
Atu1604 -1.6 -10.3 poly-beta-hydroxybutyrate synthase compare
Atu1359 -1.5 -1.5 dnaK deletion suppressor protein compare
Atu6098 -1.5 -0.6 transcriptional regulator, HTH family compare
Atu1572 -1.4 -6.0 hydrolase compare
Atu4173 -1.4 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu2057 -1.4 -3.1 DNA helicase II compare
Atu8115 -1.4 -5.8 Hypothetical Protein compare
Atu5152 -1.4 -3.1 hypothetical protein compare
Atu1457 -1.3 -2.4 hypothetical protein compare
Atu8046 -1.3 -2.1 hypothetical protein compare
Atu3496 -1.3 -3.9 hypothetical protein compare
Atu2376 -1.3 -1.3 hypothetical protein compare
Atu3008 -1.2 -1.1 hypothetical protein compare
Atu2684 -1.2 -2.0 hypothetical protein compare
Atu0876 -1.2 -1.4 superoxide dismutase compare
Atu3999 -1.2 -3.0 dithiobiotin synthetase compare
Atu1685 -1.2 -1.3 hypothetical protein compare
Atu0086 -1.2 -1.3 ribosome-binding factor A compare
Atu2205 -1.2 -4.3 transcriptional regulator, MarR family compare
Atu2155 -1.1 -8.6 methionine synthase compare
Atu1163 -1.1 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2555 -1.1 -3.1 L-lysine 2,3-aminomutase compare
Atu0795 -1.1 -2.8 hypothetical protein compare
Atu4773 -1.0 -1.6 two component response regulator compare
Atu5106 -1.0 -1.5 DNA binding protein compare
Atu5157 -1.0 -1.3 hypothetical protein compare
Atu4000 -1.0 -8.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3997 -1.0 -7.4 biotin synthetase compare
Atu0640 -1.0 -0.9 hypothetical protein compare
Atu1339 -1.0 -2.3 ribonuclease E compare
Atu0912 -1.0 -1.6 Na+/H+ antiporter compare
Atu1620 -1.0 -6.7 triosephosphate isomerase compare
Atu0029 -0.9 -3.8 S-adenosylhomocysteine hydrolase compare
Atu4144 -0.9 -1.1 hypothetical protein compare
Atu2578 -0.9 -3.9 cAMP-dependent protein kinase regulatory subunit compare
Atu3763 -0.9 -1.3 hypothetical protein compare
Atu2770 -0.9 -3.6 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu3908 -0.9 -6.3 GntR family transcriptional regulator compare
Atu6181 -0.9 -1.9 virA/G regulated topoisomerase compare
Atu1542 -0.9 -4.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu5045 -0.9 -0.9 hypothetical protein compare
Atu1028 -0.9 -1.9 hypothetical protein compare
Atu0189 -0.9 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu5429 -0.9 -1.5 transcriptional regulator compare
Atu2209 -0.9 -2.8 pyrroline-5-carboxylate reductase compare
Atu0422 -0.8 -1.6 ABC transporter, membrane spanning protein compare
Atu2125 -0.8 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0421 -0.8 -1.3 ABC transporter, membrane spanning protein compare
Atu8203 -0.8 -1.2 hypothetical protein compare
Atu3340 -0.8 -5.9 trehalose/maltose ABC transporter permease compare
Atu3773 -0.8 -2.2 hypothetical protein compare
Atu5088 -0.8 -1.3 hypothetical protein compare
Atu0291 -0.8 -4.6 hypothetical protein compare
Atu6099 -0.8 -3.0 conserved hypothetical protein compare
Atu5107 -0.8 -1.0 hypothetical protein compare
Atu5475 -0.8 -1.2 hypothetical protein compare
Atu6163 -0.8 -2.1 hypothetical protein compare
Atu0590 -0.8 -4.9 transcriptional regulator repressor compare
Atu5142 -0.8 -0.7 hypothetical protein compare
Atu1223 -0.8 -1.3 hypothetical protein compare
Atu0085 -0.8 -2.4 tRNA pseudouridine 55 synthase compare
Atu5043 -0.7 -1.8 hypothetical protein compare
Atu2795 -0.7 -3.7 cobalamin biosynthetic protein compare
Atu4819 -0.7 -1.7 hypothetical protein compare
Atu2796 -0.7 -2.7 precorrin-4 C11-methyltransferase compare
Atu6081 -0.7 -2.6 conserved hypothetical protein compare
Atu0346 -0.7 -1.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3998 -0.7 -4.5 8-amino-7-oxononanoate synthase compare
Atu3647 -0.7 -2.5 hypothetical protein compare
Atu2802 -0.7 -4.5 precorrin-8X methylmutase compare
Atu1774 -0.7 -3.8 ABC transporter, substrate binding protein (peptide) compare
Atu1818 -0.7 -1.9 hypothetical protein compare
Atu5468 -0.7 -0.7 hypothetical protein compare
Atu0601 -0.7 -4.9 oxidoreductase compare
Atu5205 -0.7 -1.8 hypothetical protein compare
Atu0153 -0.7 -2.6 transcriptional regulator, Fur family compare
Atu0332 -0.7 -3.5 RNA polymerase sigma-54 factor compare
Atu1812 -0.7 -2.5 hypothetical protein compare
Atu5470 -0.7 -1.1 hypothetical protein compare
Atu6164 -0.7 -2.5 trans-zeatin secretion protein compare
Atu4614 -0.7 -3.7 glycosyltransferase compare
Atu5095 -0.7 -1.6 hypothetical protein compare
Atu0525 -0.7 -3.0 transcriptional regulator, LuxR family compare
Atu2615 -0.7 -3.3 hypothetical protein compare
Atu2127 -0.7 -4.0 L-carnitine dehydratase compare
Atu2293 -0.7 -1.8 hypothetical protein compare
Atu2808 -0.7 -3.5 cobyric acid synthase compare
Atu1445 -0.7 -2.1 two component sensor kinase compare
Atu0413 -0.7 -1.2 stress induced protein compare
Atu5427 -0.6 -1.7 hypothetical protein compare
Atu0842 -0.6 -1.0 hypothetical protein compare
Atu6189 -0.6 -0.5 protein secretion chaperone compare
Atu2800 -0.6 -2.6 precorrin-3B C17-methyltransferase compare
Atu0524 -0.6 -2.6 transcriptional regulator, LuxR family compare
Atu5149 -0.6 -1.6 acetyltransferase compare
Atu3598 -0.6 -1.1 thiol:disulfide interchange protein compare
Atu1714 -0.6 -1.2 exonuclease III compare
Atu2200 -0.6 -2.0 cold shock protein compare
Atu2020 -0.6 -3.6 transcriptional regulator, TetR family compare
Atu0702 -0.6 -1.5 calcium-binding protein, regucalcin compare
Atu0977 -0.6 -2.6 serine protease DO-like protease compare
Atu2123 -0.6 -2.9 methylenetetrahydrofolate reductase compare
Atu0837 -0.6 -2.5 transcriptional regulator, MarR family compare
Atu2809 -0.6 -3.7 cobalamin biosynthesis protein compare
Atu0981 -0.6 -4.4 glutamate-ammonia-ligase adenylyltransferase compare
Atu3730 -0.6 -0.9 hypothetical protein compare
Atu2675 -0.6 -1.6 hypothetical protein compare
Atu4001 -0.6 -3.1 3-oxoacyl-ACP synthase compare
Atu5444 -0.6 -1.4 short-chain dehydrogenase compare
Atu8166 -0.6 -2.9 hypothetical protein compare
Atu5513 -0.6 -0.7 cold shock protein compare
Atu2124 -0.6 -2.4 transcriptional regulator, ArsR family compare
Atu6067 -0.6 -1.8 conserved hypothetical protein compare
Atu2801 -0.6 -2.0 precorrin-2 C20 methyltransferase compare
Atu6146 -0.6 -2.1 conserved hypothetical protein compare
Atu1258 -0.6 -2.1 ATP-dependent Clp protease, proteolytic subunit compare
Atu8034 -0.6 -2.4 hypothetical protein compare
Atu2805 -0.6 -2.3 cobalamin synthesis protein compare
Atu5114 -0.5 -1.1 hypothetical protein compare
Atu8055 -0.5 -1.0 hypothetical protein compare
Atu3472 -0.5 -2.8 2-oxoisovalerate dehydrogenase subunit beta compare
Atu0419 -0.5 -1.2 two component sensor kinase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in carbon source experiments

For carbon source Dextrin from potato starch across organisms