Experiment set2IT087 for Pseudomonas simiae WCS417

Compare to:

m-Inositol carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -6.3 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_00185 -6.2 -4.3 tryptophan synthase subunit beta compare
PS417_27040 -6.0 -5.9 3-phosphoglycerate dehydrogenase compare
PS417_25720 -5.8 -8.6 anthranilate synthase component II compare
PS417_18600 -5.2 -4.4 isopropylmalate isomerase compare
PS417_04415 -5.2 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -5.1 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02510 -5.1 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_24745 -4.9 -7.5 gamma-glutamyl phosphate reductase compare
PS417_26740 -4.9 -10.3 homoserine acetyltransferase compare
PS417_25725 -4.9 -19.7 anthranilate synthase component I compare
PS417_23805 -4.8 -7.6 acetolactate synthase 3 regulatory subunit compare
PS417_04420 -4.7 -10.4 histidinol dehydrogenase compare
PS417_01850 -4.5 -11.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -4.5 -14.9 acetolactate synthase 3 catalytic subunit compare
PS417_18585 -4.4 -7.5 3-isopropylmalate dehydrogenase compare
PS417_01565 -4.4 -10.0 imidazole glycerol phosphate synthase compare
PS417_02005 -4.4 -12.6 glutamate synthase compare
PS417_23800 -4.3 -15.4 ketol-acid reductoisomerase compare
PS417_23545 -4.2 -4.9 gamma-glutamyl kinase compare
PS417_01855 -4.2 -4.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_20985 -4.1 -5.6 porin compare
PS417_16465 -4.1 -13.6 sirohydrochlorin ferrochelatase compare
PS417_05595 -4.1 -10.8 ornithine carbamoyltransferase compare
PS417_27195 -4.0 -2.2 N-acetylglutamate synthase compare
PS417_18595 -3.9 -6.6 3-isopropylmalate dehydratase compare
PS417_18530 -3.9 -5.6 O-succinylhomoserine sulfhydrylase compare
PS417_12290 -3.9 -12.0 sulfite reductase compare
PS417_23110 -3.8 -10.3 2-isopropylmalate synthase compare
PS417_27795 -3.8 -2.2 orotate phosphoribosyltransferase compare
PS417_26745 -3.7 -5.0 methionine biosynthesis protein MetW compare
PS417_11850 -3.6 -12.1 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) conserved
PS417_26890 -3.6 -7.4 dihydroxy-acid dehydratase compare
PS417_25710 -3.5 -2.9 indole-3-glycerol-phosphate synthase compare
PS417_12855 -3.5 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02000 -3.5 -14.8 glutamate synthase compare
PS417_26730 -3.3 -2.0 pyrroline-5-carboxylate reductase compare
PS417_23900 -3.2 -16.5 poly(A) polymerase compare
PS417_11890 -3.2 -14.6 Inositol transport system ATP-binding protein (from data) conserved
PS417_11860 -3.2 -7.8 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) conserved
PS417_11885 -3.0 -5.6 Inositol transport system sugar-binding protein (from data) conserved
PS417_28220 -3.0 -4.1 LysR family transcriptional regulator compare
PS417_24155 -3.0 -4.3 ATP-binding protein compare
PS417_11870 -3.0 -15.5 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) conserved
PS417_11895 -3.0 -14.0 Inositol transport system permease protein (from data) conserved
PS417_27835 -3.0 -11.1 endoribonuclease compare
PS417_11875 -3.0 -8.8 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) conserved
PS417_20160 -2.9 -4.5 cysteine synthase compare
PS417_11865 -2.9 -3.6 xylose isomerase compare
PS417_02415 -2.8 -6.6 phosphoserine phosphatase compare
PS417_11855 -2.8 -12.2 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) conserved
PS417_20125 -2.8 -4.7 phosphoribosylglycinamide formyltransferase compare
PS417_26040 -2.8 -3.8 malate synthase compare
PS417_08230 -2.7 -3.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26995 -2.7 -11.3 phosphoserine phosphatase compare
PS417_08540 -2.7 -5.8 RNA helicase compare
PS417_01560 -2.6 -3.6 imidazoleglycerol-phosphate dehydratase compare
PS417_25715 -2.6 -4.6 anthranilate phosphoribosyltransferase compare
PS417_23995 -2.6 -1.5 preprotein translocase subunit SecG compare
PS417_00180 -2.5 -4.9 tryptophan synthase subunit alpha compare
PS417_27800 -2.5 -9.9 exodeoxyribonuclease III compare
PS417_01580 -2.4 -2.1 imidazole glycerol phosphate synthase compare
PS417_08125 -2.4 -1.9 prephenate dehydratase compare
PS417_21655 -2.3 -2.3 aspartate kinase compare
PS417_18690 -2.2 -6.7 aromatic amino acid aminotransferase compare
PS417_16990 -2.2 -10.2 acyl-CoA dehydrogenase compare
PS417_02555 -2.2 -16.3 exoribonuclease R compare
PS417_08245 -2.1 -2.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_16570 -2.1 -12.1 isocitrate lyase compare
PS417_13510 -2.0 -2.5 polyketide cyclase compare
PS417_21035 -2.0 -12.5 multidrug transporter compare
PS417_08225 -1.9 -6.0 acetolactate synthase compare
PS417_21125 -1.9 -9.5 phosphoadenosine phosphosulfate reductase compare
PS417_09470 -1.9 -2.0 hypothetical protein compare
PS417_06375 -1.8 -1.8 deoxycytidine triphosphate deaminase compare
PS417_07165 -1.8 -4.4 dihydrodipicolinate synthase compare
PS417_08220 -1.7 -1.6 epimerase compare
PS417_07170 -1.7 -3.8 hypothetical protein compare
PS417_08205 -1.5 -5.5 acetyltransferase compare
PS417_21430 -1.5 -4.0 3-oxoacyl-ACP synthase compare
PS417_22620 -1.5 -5.5 pyruvate kinase compare
PS417_10995 -1.5 -3.7 GntR family transcriptional regulator compare
PS417_24835 -1.4 -4.8 hypothetical protein compare
PS417_26005 -1.4 -9.4 biotin synthase compare
PS417_01605 -1.4 -1.2 phosphoglycerate mutase compare
PS417_08200 -1.4 -3.5 hypothetical protein compare
PS417_27010 -1.4 -9.3 threonine dehydratase compare
PS417_01995 -1.3 -3.2 hypothetical protein compare
PS417_20665 -1.3 -8.2 hypothetical protein compare
PS417_08195 -1.3 -7.4 hypothetical protein compare
PS417_03250 -1.3 -10.1 methylmalonate-semialdehyde dehydrogenase conserved
PS417_10925 -1.3 -6.1 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) conserved
PS417_06200 -1.3 -4.6 protein-PII uridylyltransferase compare
PS417_27135 -1.2 -1.1 glutamine synthetase compare
PS417_17565 -1.2 -4.4 branched-chain amino acid aminotransferase compare
PS417_27435 -1.2 -6.7 polyphosphate kinase compare
PS417_21705 -1.2 -4.9 arginine N-succinyltransferase compare
PS417_19790 -1.2 -2.6 ATP synthase compare
PS417_06645 -1.1 -8.3 RNA polymerase-associated protein RapA compare
PS417_23950 -1.1 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_18590 -1.1 -1.8 SAM-dependent methyltransferase compare
PS417_24935 -1.1 -1.1 hypothetical protein compare
PS417_22385 -1.1 -7.7 quinolinate synthase A compare
PS417_24765 -1.1 -3.1 membrane protein compare
PS417_02485 -1.1 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27305 -1.1 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_01570 -1.1 -0.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01715 -1.1 -1.8 hypothetical protein compare
PS417_09915 -1.1 -2.2 hypothetical protein compare
PS417_04585 -1.1 -1.9 hypothetical protein compare
PS417_06680 -1.1 -6.6 nuclease PIN compare
PS417_21630 -1.0 -2.5 magnesium transporter compare
PS417_21700 -1.0 -4.8 arginine N-succinyltransferase compare
PS417_22520 -1.0 -2.2 histidine kinase compare
PS417_03245 -1.0 -4.6 omega amino acid--pyruvate aminotransferase compare
PS417_12355 -1.0 -2.1 magnesium chelatase compare
PS417_12310 -1.0 -5.9 methionine synthase compare
PS417_27875 -1.0 -5.0 histidine kinase compare
PS417_05985 -1.0 -3.6 chemotaxis protein CheY compare
PS417_03240 -0.9 -4.1 LysR family transcriptional regulator compare
PS417_07875 -0.9 -1.2 hypothetical protein compare
PS417_19805 -0.9 -1.2 flagellar M-ring protein FliF compare
PS417_26985 -0.9 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05455 -0.9 -4.2 XRE family transcriptional regulator compare
PS417_21360 -0.9 -1.4 termination factor Rho compare
PS417_16490 -0.9 -1.7 cell division protein FtsK compare
PS417_10920 -0.9 -2.7 LysR family transcriptional regulator compare
PS417_12565 -0.9 -2.3 2-dehydro-3-deoxygluconokinase compare
PS417_08155 -0.9 -2.3 integration host factor subunit beta compare
PS417_23770 -0.9 -1.5 exodeoxyribonuclease V subunit alpha compare
PS417_13490 -0.9 -1.7 hypothetical protein compare
PS417_04860 -0.8 -5.4 ATPase compare
PS417_22445 -0.8 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_06530 -0.8 -2.1 membrane protein compare
PS417_20610 -0.8 -1.4 hypothetical protein compare
PS417_13255 -0.8 -2.4 ABC transporter compare
PS417_20030 -0.8 -3.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_08430 -0.8 -4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_06895 -0.8 -3.2 DNA-binding protein compare
PS417_00510 -0.8 -0.8 membrane protein compare
PS417_17590 -0.7 -1.8 ABC transporter substrate-binding protein compare
PS417_13165 -0.7 -2.7 peroxidase compare
PS417_05570 -0.7 -2.6 DeoR faimly transcriptional regulator compare
PS417_27940 -0.7 -1.7 type VI secretion protein compare
PS417_24800 -0.7 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_27585 -0.7 -2.3 diaminopimelate epimerase compare
PS417_10985 -0.7 -0.9 NADH:flavin oxidoreductase compare
PS417_01950 -0.7 -3.4 malate dehydrogenase compare
PS417_07115 -0.7 -5.0 L-aspartate oxidase compare
PS417_26540 -0.7 -4.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_24840 -0.7 -1.1 hypothetical protein compare
PS417_14515 -0.7 -1.7 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_18250 -0.7 -1.5 chemotaxis protein compare
PS417_25225 -0.7 -1.7 MFS transporter compare
PS417_27315 -0.7 -1.0 hypothetical protein compare
PS417_19600 -0.7 -1.3 exonuclease compare
PS417_01710 -0.7 -3.9 histidine utilization repressor compare
PS417_05165 -0.7 -2.6 cytosol aminopeptidase compare
PS417_08130 -0.7 -1.6 aspartate aminotransferase compare
PS417_10535 -0.7 -3.2 hypothetical protein compare
PS417_16100 -0.7 -2.3 antibiotic biosynthesis monooxygenase compare
PS417_26510 -0.7 -3.8 5,10-methylenetetrahydrofolate reductase compare
PS417_21425 -0.6 -1.2 4-amino-4-deoxychorismate lyase compare
PS417_04440 -0.6 -2.1 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_21000 -0.6 -1.4 CrfX protein compare
PS417_27035 -0.6 -1.6 FAD-linked oxidase compare
PS417_17000 -0.6 -2.2 MerR family transcriptional regulator compare
PS417_25985 -0.6 -1.6 dethiobiotin synthetase compare
PS417_19075 -0.6 -3.8 ABC transporter ATP-binding protein compare
PS417_05650 -0.6 -2.0 leucyl-tRNA synthetase compare
PS417_16715 -0.6 -1.1 DoxX family protein compare
PS417_25270 -0.6 -2.5 NrdR family transcriptional regulator compare
PS417_00650 -0.6 -0.7 LysR family transcriptional regulator compare
PS417_22230 -0.6 -2.9 class I peptide chain release factor compare
PS417_24630 -0.6 -2.4 ATP-binding protein compare
PS417_14805 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_20670 -0.6 -3.7 glycosyl transferase family 2 compare
PS417_08860 -0.6 -2.7 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_11770 -0.6 -1.4 pyruvate dehydrogenase compare
PS417_25895 -0.6 -1.7 glyoxalase compare
PS417_17795 -0.6 -1.5 ABC transporter permease compare
PS417_22695 -0.6 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21750 -0.6 -5.0 acetyl-CoA synthetase compare
PS417_19625 -0.6 -2.3 histidine kinase compare
PS417_27340 -0.6 -2.2 NADPH:quinone oxidoreductase compare
PS417_02980 -0.6 -1.1 chemotaxis protein compare
PS417_19425 -0.6 -0.8 allantoicase compare
PS417_02480 -0.6 -3.0 DNA mismatch repair protein compare
PS417_15910 -0.6 -3.0 lysine transporter LysE compare
PS417_11405 -0.6 -2.5 precorrin 6A synthase compare
PS417_05820 -0.6 -2.1 recombinase RecX compare
PS417_26725 -0.6 -2.8 hypothetical protein compare
PS417_00660 -0.6 -2.1 DSBA oxidoreductase compare
PS417_05840 -0.6 -1.9 LuxR family transcriptional regulator compare
PS417_16055 -0.6 -1.8 biopolymer transporter TolR compare
PS417_26000 -0.6 -3.7 8-amino-7-oxononanoate synthase compare
PS417_12595 -0.6 -1.4 transcriptional regulator compare
PS417_02370 -0.6 -1.2 ADP-ribose pyrophosphatase compare
PS417_02765 -0.6 -1.3 phosphate starvation-inducible protein PsiF compare
PS417_07015 -0.6 -2.5 helicase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source m-Inositol in Pseudomonas simiae WCS417

For carbon source m-Inositol across organisms